메뉴 건너뛰기




Volumn 6, Issue , 2005, Pages

Protein domain interaction interface database: InterPare

Author keywords

[No Author keywords available]

Indexed keywords

ACCESSIBLE SURFACE AREAS; AMINO ACID PROPENSITIES; COMPUTATIONAL GEOMETRY METHODS; DOMAIN-DOMAIN INTERACTIONS; INTERACTION INTERFACE; MATHEMATICAL DEFINITIONS; PROTEIN INTERACTION; VISUALIZATION TOOLS;

EID: 25444491954     PISSN: 14712105     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-6-207     Document Type: Article
Times cited : (48)

References (52)
  • 1
    • 17444365746 scopus 로고    scopus 로고
    • Biological network evolution hypothesis applied to protein structural interactome
    • Bolser DM, Park J: Biological network evolution hypothesis applied to protein structural interactome. Genomics and Informatics 2003, 1:7-19.
    • (2003) Genomics and Informatics , vol.1 , pp. 7-19
    • Bolser, D.M.1    Park, J.2
  • 2
    • 0035751865 scopus 로고    scopus 로고
    • Conservation of Protein Interaction Network in Evolution
    • Park J, Bolser D: Conservation of Protein Interaction Network in Evolution. Genome Informatics 2001, 12:135-140.
    • (2001) Genome Informatics , vol.12 , pp. 135-140
    • Park, J.1    Bolser, D.2
  • 3
    • 0346733329 scopus 로고    scopus 로고
    • Are protein-protein interfaces more conserved in sequence than the rest of the protein surface?
    • Caffrey DR, Somaroo S, Hughes JD, Mintseris J, Huang ES: Are protein-protein interfaces more conserved in sequence than the rest of the protein surface? Protein Science 2004, 13:190-202.
    • (2004) Protein Science , vol.13 , pp. 190-202
    • Caffrey, D.R.1    Somaroo, S.2    Hughes, J.D.3    Mintseris, J.4    Huang, E.S.5
  • 4
    • 2442646432 scopus 로고    scopus 로고
    • Large scale co-evolution analysis of Protein Structural Interlogues using the global Protein Structural Interactome Map (PSIMAP)
    • Kim WK, Bolser DM, Park JH: Large scale co-evolution analysis of Protein Structural Interlogues using the global Protein Structural Interactome Map (PSIMAP). Bioinformatics 2004, 20:1138-1150.
    • (2004) Bioinformatics , vol.20 , pp. 1138-1150
    • Kim, W.K.1    Bolser, D.M.2    Park, J.H.3
  • 5
    • 2942610863 scopus 로고    scopus 로고
    • Visualisation and Graph-theoretic Analysis of a Large-scale Protein Structural Interactome
    • Bolser DM, Dafas P, Harrington R, Park J, Schroeder M: Visualisation and Graph-theoretic Analysis of a Large-scale Protein Structural Interactome. BMC Bioinformatics 2003, 8:1471-2105
    • (2003) BMC Bioinformatics , vol.8 , pp. 1471-2105
    • Bolser, D.M.1    Dafas, P.2    Harrington, R.3    Park, J.4    Schroeder, M.5
  • 6
    • 25144431896 scopus 로고    scopus 로고
    • Comparative interactomics analysis of protein family interaction networks using PSIMAP (protein structural interactome map)
    • Park D, Lee S, Bolser D, Schroeder M, Lappe M, Oh D, Bhak J: Comparative interactomics analysis of protein family interaction networks using PSIMAP (protein structural interactome map). Bioinformatics. 2005, 21, 3234-3240.
    • (2005) Bioinformatics , vol.21 , pp. 3234-3240
    • Park, D.1    Lee, S.2    Bolser, D.3    Schroeder, M.4    Lappe, M.5    Oh, D.6    Bhak, J.7
  • 7
    • 17444391730 scopus 로고    scopus 로고
    • Architecture of basic building blocks in protein and domain structural interaction networks
    • Moon HS, Bhak J, Lee KH, Lee D: Architecture of basic building blocks in protein and domain structural interaction networks. Bioinformatics 2005, 21, 1479-1486.
    • (2005) Bioinformatics , vol.21 , pp. 1479-1486
    • Moon, H.S.1    Bhak, J.2    Lee, K.H.3    Lee, D.4
  • 8
    • 7444243253 scopus 로고    scopus 로고
    • Predicting Protein Interactions in Human by Homologous Interactions in Yeast
    • Kim HG, Park J, Han KS: Predicting Protein Interactions in Human by Homologous Interactions in Yeast. Lecture Notes in Computer Science 2003, 2637:159-165.
    • (2003) Lecture Notes in Computer Science , vol.2637 , pp. 159-165
    • Kim, H.G.1    Park, J.2    Han, K.S.3
  • 9
    • 0016708122 scopus 로고
    • Principles of protein-protein recognition
    • Chothia C, Janin J: Principles of protein-protein recognition. Nature 1975, 256:705-708.
    • (1975) Nature , vol.256 , pp. 705-708
    • Chothia, C.1    Janin, J.2
  • 10
    • 0031547966 scopus 로고    scopus 로고
    • Electrostatic Complementary at Protein/Protein Interfaces
    • McCoy AJ, Epa VC, Colman PM: Electrostatic Complementary at Protein/Protein Interfaces. J Mol Biol 1997, 268:570-584.
    • (1997) J. Mol. Biol. , vol.268 , pp. 570-584
    • McCoy, A.J.1    Epa, V.C.2    Colman, P.M.3
  • 11
    • 0027772959 scopus 로고
    • Shape complementarity at protein/protein interfaces
    • Lawrence MC, Colman PM: Shape complementarity at protein/protein interfaces. J Mol Biol 1993, 234:946-950.
    • (1993) J. Mol. Biol. , vol.234 , pp. 946-950
    • Lawrence, M.C.1    Colman, P.M.2
  • 12
    • 0024046505 scopus 로고    scopus 로고
    • An investigation of protein subunit and domain interfaces
    • Argos P: An investigation of protein subunit and domain interfaces. Protein Engineering 1998, 2:101-113.
    • (1998) Protein Engineering , vol.2 , pp. 101-113
    • Argos, P.1
  • 13
    • 0015291061 scopus 로고
    • Interpolation Using Surface Splines
    • Harder RL, Desmarais RN: Interpolation Using Surface Splines. J Aircraft 1972, 9:189-191.
    • (1972) J. Aircraft , vol.9 , pp. 189-191
    • Harder, R.L.1    Desmarais, R.N.2
  • 14
    • 34250265664 scopus 로고
    • Multivariate Interpolation at Arbitrary Points Made Simple
    • Meinguet J: Multivariate Interpolation at Arbitrary Points Made Simple. J Appl Math Phys 1979, 30:292-304.
    • (1979) J. Appl. Math Phys. , vol.30 , pp. 292-304
    • Meinguet, J.1
  • 15
    • 0031565729 scopus 로고    scopus 로고
    • Analysis of Protein-protein interaction sites using surface patches
    • Jones S, Thornton JM: Analysis of Protein-protein interaction sites using surface patches. J Mol Biol 1997, 272:121-132.
    • (1997) J. Mol. Biol. , vol.272 , pp. 121-132
    • Jones, S.1    Thornton, J.M.2
  • 16
    • 0037093645 scopus 로고    scopus 로고
    • Dissecting Protein-Protein Recognition Sites
    • Chakrabarti P, Janin J: Dissecting Protein-Protein Recognition Sites. Proteins 2002, 47:334-343.
    • (2002) Proteins , vol.47 , pp. 334-343
    • Chakrabarti, P.1    Janin, J.2
  • 17
    • 0242299201 scopus 로고    scopus 로고
    • Dissecting Subunit Interfaces in Homodimeric Proteins
    • Bahadur R.P., Chakrabarti P, Rodier F, Janin J: Dissecting Subunit Interfaces in Homodimeric Proteins. Proteins 2003, 53:708-719.
    • (2003) Proteins , vol.53 , pp. 708-719
    • Bahadur, R.P.1    Chakrabarti, P.2    Rodier, F.3    Janin, J.4
  • 19
    • 1842850600 scopus 로고    scopus 로고
    • Voronoi and Voronoi-related tessellations in studies of protein structure and interaction
    • Poupon A: Voronoi and Voronoi-related tessellations in studies of protein structure and interaction. Curr Opio Stru Biol 2004, 14:1-9.
    • (2004) Curr. Opio. Stru. Biol. , vol.14 , pp. 1-9
    • Poupon, A.1
  • 20
    • 0015977588 scopus 로고
    • The interpretation of protein structures: Total volume, group volume distributions and packing density
    • Richards FM: The interpretation of protein structures: total volume, group volume distributions and packing density. J Mol Biol 1974, 82:1-14.
    • (1974) J. Mol. Biol. , vol.82 , pp. 1-14
    • Richards, F.M.1
  • 21
    • 0017429069 scopus 로고
    • Area, volumes, packing and protein structures
    • Richards FM: Area, volumes, packing and protein structures. Ann Rev Biophys Bioeng 1977, 6:151-176.
    • (1977) Ann. Rev. Biophys. Bioeng. , vol.6 , pp. 151-176
    • Richards, F.M.1
  • 22
    • 84874664198 scopus 로고    scopus 로고
    • Protein Data Bank
    • Protein Data Bank, [http://www.rcsb.org/pdb].
  • 24
    • 84874656306 scopus 로고    scopus 로고
    • Chime
    • Chime, [http://www.mdl.com/products/framework/chime].
  • 25
    • 84874658038 scopus 로고    scopus 로고
    • Jmol
    • Jmol, [http://jmol.sourceforge.net].
  • 26
    • 84874659654 scopus 로고    scopus 로고
    • InterFacer
    • InterFacer, [http://www.interfacer.org].
  • 28
    • 84874658469 scopus 로고    scopus 로고
    • Structural Classification Of Proteins
    • Structural Classification Of Proteins, [http://scop.mrc-lmb.ac.uk/scop].
  • 29
    • 0028961335 scopus 로고
    • SCOP: A structural classification of proteins database for the investigation of sequences and structures
    • Murzin AG, Brenner SE, Hubbard T, Chothia C: SCOP: a structural classification of proteins database for the investigation of sequences and structures. J Mol Biol 1995, 247:536-540.
    • (1995) J. Mol. Biol. , vol.247 , pp. 536-540
    • Murzin, A.G.1    Brenner, S.E.2    Hubbard, T.3    Chothia, C.4
  • 30
    • 84874653530 scopus 로고    scopus 로고
    • ASTRAL
    • ASTRAL, [http://astral.berkeley.edu].
  • 31
    • 0033977581 scopus 로고    scopus 로고
    • The ASTRAL compendium for sequence and structure analysis
    • Brenner SE, Koehl P, Levitt M: The ASTRAL compendium for sequence and structure analysis. Nucleic Acids Res 2000, 28:254-256.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 254-256
    • Brenner, S.E.1    Koehl, P.2    Levitt, M.3
  • 32
    • 0035970298 scopus 로고    scopus 로고
    • Mapping Protein Family Interactions: Intramolecular and Intermolecular Protein Family Interaction Repertoires in the PDB and Yeast
    • 2001
    • Park J, Lappe M, Teichmann S:(2001). Mapping Protein Family Interactions: Intramolecular and Intermolecular Protein Family Interaction Repertoires in the PDB and Yeast. J Mol Biol 2001, 307:929-938.
    • (2001) J. Mol. Biol. , vol.307 , pp. 929-938
    • Park, J.1    Lappe, M.2    Teichmann, S.3
  • 34
    • 0035232248 scopus 로고    scopus 로고
    • Generating protein interaction maps from incomplete data: Application to Fold assignment
    • Lappe M, Park J, Niggemann O, Holm L: Generating protein interaction maps from incomplete data: application to Fold assignment. Bioinformatics 2001, Suppl 1:149-156.
    • (2001) Bioinformatics , Issue.SUPPL. 1 , pp. 149-156
    • Lappe, M.1    Park, J.2    Niggemann, O.3    Holm, L.4
  • 36
    • 3543090867 scopus 로고    scopus 로고
    • Using convex hulls to extract interaction interfaces from known structures
    • Dafas P, Bolser DM, Gomoluch J, Park J, Schroeder M: Using convex hulls to extract interaction interfaces from known structures. Bioinformatics 2004, 10:1486-1490.
    • (2004) Bioinformatics , vol.10 , pp. 1486-1490
    • Dafas, P.1    Bolser, D.M.2    Gomoluch, J.3    Park, J.4    Schroeder, M.5
  • 37
    • 84874659982 scopus 로고    scopus 로고
    • PSIMAP
    • PSIMAP, [http://psimap.org].
  • 38
    • 0030028728 scopus 로고    scopus 로고
    • Principles of protein-protein interactions
    • Jones S, Thornton JM: Principles of protein-protein interactions. Proc Natl Acad Sci 1996, 93: 13-20.
    • (1996) Proc. Natl. Acad. Sci. , vol.93 , pp. 13-20
    • Jones, S.1    Thornton, J.M.2
  • 39
    • 0034060520 scopus 로고    scopus 로고
    • Protein domain interfaces: Characterization and comparison with oligomeric protein interfaces
    • Jones S, Marin A, Thornton JM: Protein domain interfaces: characterization and comparison with oligomeric protein interfaces. Protein Engineering 2000, 13:77-82.
    • (2000) Protein Engineering , vol.13 , pp. 77-82
    • Jones, S.1    Marin, A.2    Thornton, J.M.3
  • 40
    • 84874663978 scopus 로고    scopus 로고
    • NACCESS
    • NACCESS, [http://wolf.bms.umist.ac.uk/naccess].
  • 41
    • 84874653632 scopus 로고
    • NACCESS. Department of Biochemistry and Molecular Biology, University College, London
    • Hubbard, SJ, Thornton, JM: NACCESS. Department of Biochemistry and Molecular Biology, University College, 1993, London.
    • (1993)
    • Hubbard, S.J.1    Thornton, J.M.2
  • 42
    • 0015222647 scopus 로고
    • The Interpretation of Protein Structures: Estimation of Static Accessibility
    • Lee B, Richards FM: The Interpretation of Protein Structures: Estimation of Static Accessibility. J Mol Biol 1971, 55:379-400.
    • (1971) J. Mol. Biol. , vol.55 , pp. 379-400
    • Lee, B.1    Richards, F.M.2
  • 43
    • 0017187836 scopus 로고
    • The nature of the accessible and buried surfaces in proteins
    • Chothia C: The nature of the accessible and buried surfaces in proteins. J Mol Biol 1976, 105:1-14.
    • (1976) J. Mol. Biol. , vol.105 , pp. 1-14
    • Chothia, C.1
  • 45
    • 0029488073 scopus 로고
    • Defining, Computing, and Visualizing Molecular Interfaces
    • Varshney A, Brooks F, Richardson D: Defining, Computing, and Visualizing Molecular Interfaces. IEEE Visualization 1995, 95:36-43.
    • (1995) IEEE Visualization , vol.95 , pp. 36-43
    • Varshney, A.1    Brooks, F.2    Richardson, D.3
  • 48
    • 0034062874 scopus 로고    scopus 로고
    • Fast assignment of protein structures to sequences using the intermediate sequence library PDB-ISL
    • Teichmann SA, Chothia C, Church GM, Park JH: Fast assignment of protein structures to sequences using the intermediate sequence library PDB-ISL. Bioinformatics 2000, 16:117-124.
    • (2000) Bioinformatics , vol.16 , pp. 117-124
    • Teichmann, S.A.1    Chothia, C.2    Church, G.M.3    Park, J.H.4
  • 49
    • 84874658166 scopus 로고    scopus 로고
    • BLAST
    • BLAST, [http://www.ncbi.nlm.nih.gov/BLAST/].
  • 51
    • 0029785147 scopus 로고    scopus 로고
    • Mapping the protein universe
    • Holm L, Sander C: Mapping the protein universe. Science 1996, 273:595-602
    • (1996) Science , vol.273 , pp. 595-602
    • Holm, L.1    Sander, C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.