-
1
-
-
37549018895
-
Transcriptome dynamics during the transition from anaerobic photosynthesis to aerobic respiration in Rhodobacter sphaeroides 2.4.1
-
Arai, H., J. H. Roh, and S. Kaplan. 2008. Transcriptome dynamics during the transition from anaerobic photosynthesis to aerobic respiration in Rhodobacter sphaeroides 2.4.1. J. Bacteriol. 190:286-299.
-
(2008)
J. Bacteriol
, vol.190
, pp. 286-299
-
-
Arai, H.1
Roh, J.H.2
Kaplan, S.3
-
2
-
-
33749341500
-
Whole genome transcriptional analysis of chemolithoautotrophic thiosulfate oxidation by Thiobacillus denitrificans under aerobic versus denitrifying conditions
-
Beller, H. R., T. E. Letain, A. Chakicherla, S. R. Kane, T. C. Legier, and M. A. Coleman. 2006. Whole genome transcriptional analysis of chemolithoautotrophic thiosulfate oxidation by Thiobacillus denitrificans under aerobic versus denitrifying conditions. J. Bacteriol. 188:7006-7015.
-
(2006)
J. Bacteriol
, vol.188
, pp. 7006-7015
-
-
Beller, H.R.1
Letain, T.E.2
Chakicherla, A.3
Kane, S.R.4
Legier, T.C.5
Coleman, M.A.6
-
3
-
-
0025306403
-
The use of gene fusions to determine the topology of all of the subunits of the cytochrome o terminal oxidase complex of Escherichia coli
-
Chepuri, V., and R. B. Gennis. 1990. The use of gene fusions to determine the topology of all of the subunits of the cytochrome o terminal oxidase complex of Escherichia coli. J. Biol. Chem. 265:12978-12986.
-
(1990)
J. Biol. Chem
, vol.265
, pp. 12978-12986
-
-
Chepuri, V.1
Gennis, R.B.2
-
5
-
-
0344745164
-
3-type cytochrome c oxidases of Paracoccus denitrificans reveals significant differences in proton-pump design
-
3-type cytochrome c oxidases of Paracoccus denitrificans reveals significant differences in proton-pump design. Mol. Microbiol. 20:1247-1260.
-
(1996)
Mol. Microbiol
, vol.20
, pp. 1247-1260
-
-
de Gier, J.-W.1
Schepper, M.2
Reijnders, W.N.M.3
van Dyck, S.J.4
Slotboom, D.J.5
Warne, A.6
Saraste, M.7
Krab, K.8
Finel, M.9
Stouthamer, A.H.10
van Spanning, R.J.M.11
van der Oost, J.12
-
6
-
-
1842349188
-
Broad host range DNA cloning system for gram-negative bacteria: Construction of a gene bank of Rhizobium meliloti
-
Ditta, G., S. Stanfield, D. Corbin, and D. R. Helinski. 1980. Broad host range DNA cloning system for gram-negative bacteria: construction of a gene bank of Rhizobium meliloti. Proc. Natl. Acad. Sci. USA 77:7347-7351.
-
(1980)
Proc. Natl. Acad. Sci. USA
, vol.77
, pp. 7347-7351
-
-
Ditta, G.1
Stanfield, S.2
Corbin, D.3
Helinski, D.R.4
-
9
-
-
2942558361
-
RegB/RegA, a highly conserved redox responding global two-component regulatory system
-
Elsen, S. , L. R. Swem, D. L. Swem, and C. E. Bauer. 2004. RegB/RegA, a highly conserved redox responding global two-component regulatory system. Microbiol. Mol. Biol. Rev. 68:263-279.
-
(2004)
Microbiol. Mol. Biol. Rev
, vol.68
, pp. 263-279
-
-
Elsen, S.1
Swem, L.R.2
Swem, D.L.3
Bauer, C.E.4
-
10
-
-
0034728367
-
From redox flow to gene regulation: Role of PrrC protein of Rhodobacter sphaeroides 2.4.1
-
Eraso, J. M., and S. Kaplan. 2000. From redox flow to gene regulation: role of PrrC protein of Rhodobacter sphaeroides 2.4.1. Biochemistry 39:2052-2062.
-
(2000)
Biochemistry
, vol.39
, pp. 2052-2062
-
-
Eraso, J.M.1
Kaplan, S.2
-
11
-
-
0036370454
-
Redox flow as an instrument of gene regulation
-
Eraso, J. M., and S. Kaplan. 2002. Redox flow as an instrument of gene regulation. Methods Enzymol. 348:216-221.
-
(2002)
Methods Enzymol
, vol.348
, pp. 216-221
-
-
Eraso, J.M.1
Kaplan, S.2
-
12
-
-
0028061194
-
The superfamily of heme-copper respiratory oxidase
-
Garcia-Horsman, A., B. Barquera, J. Rumbley, J. Ma, and R. B. Gennis. 1994. The superfamily of heme-copper respiratory oxidase. J. Bacteriol. 176:5587-5600.
-
(1994)
J. Bacteriol
, vol.176
, pp. 5587-5600
-
-
Garcia-Horsman, A.1
Barquera, B.2
Rumbley, J.3
Ma, J.4
Gennis, R.B.5
-
14
-
-
0030926229
-
Comparative characterization of SecA from the alpha-subclass purple bacterium Rhodobacter capsulatus and Escherichia coli reveals differences in membrane and precursor specificity
-
Helde, R., B. Wiesler, E. Wachter, A. Neubüser, H. K. Hoffschulte, T. Hengelage, K. L. Schimz, R. A. Stuart, and M. Müller. 1997. Comparative characterization of SecA from the alpha-subclass purple bacterium Rhodobacter capsulatus and Escherichia coli reveals differences in membrane and precursor specificity. J. Bacteriol. 179:4003-4012.
-
(1997)
J. Bacteriol
, vol.179
, pp. 4003-4012
-
-
Helde, R.1
Wiesler, B.2
Wachter, E.3
Neubüser, A.4
Hoffschulte, H.K.5
Hengelage, T.6
Schimz, K.L.7
Stuart, R.A.8
Müller, M.9
-
17
-
-
0028890031
-
Structure at 2.8 Å resolution of cytochrome c oxidase from Paracoccus denitrificans
-
Iwata, S., C. Ostermeier, B. Ludwig, and H. Michel. 1995. Structure at 2.8 Å resolution of cytochrome c oxidase from Paracoccus denitrificans. Nature 376:660-669.
-
(1995)
Nature
, vol.376
, pp. 660-669
-
-
Iwata, S.1
Ostermeier, C.2
Ludwig, B.3
Michel, H.4
-
19
-
-
0031750711
-
Using genetics to explore cytochrome function and structure in Rhodobacter
-
Koch, H.-G., H. Myllykallio, and F. Daldal. 1998. Using genetics to explore cytochrome function and structure in Rhodobacter. Methods Enzymol. 297:81-94.
-
(1998)
Methods Enzymol
, vol.297
, pp. 81-94
-
-
Koch, H.-G.1
Myllykallio, H.2
Daldal, F.3
-
22
-
-
27744527534
-
Differential use of the two high-oxygen-affinity terminal oxidases of Brucella suis for in vitro and intramacrophagic multiplication
-
Loisel-Meyer, S., M. P. Jimenez de Bagües, S. Köhler, J. P. Liautard, and V. Jubier-Maurin. 2005. Differential use of the two high-oxygen-affinity terminal oxidases of Brucella suis for in vitro and intramacrophagic multiplication. Infect. Immun. 73:7768-7771.
-
(2005)
Infect. Immun
, vol.73
, pp. 7768-7771
-
-
Loisel-Meyer, S.1
Jimenez de Bagües, M.P.2
Köhler, S.3
Liautard, J.P.4
Jubier-Maurin, V.5
-
23
-
-
0015788663
-
Genetic mutations affecting the respiratory electron-transport system of the photosynthetic bacterium Rhodopseudomonas capsulata
-
Marrs, B. L. , and H. Gest. 1973. Genetic mutations affecting the respiratory electron-transport system of the photosynthetic bacterium Rhodopseudomonas capsulata. J. Bacteriol. 114:1045-1051.
-
(1973)
J. Bacteriol
, vol.114
, pp. 1045-1051
-
-
Marrs, B.L.1
Gest, H.2
-
24
-
-
0031900396
-
3 oxidase in Rhodobacter sphaeroides 2.4.1: Involvement of the FnrL protein
-
3 oxidase in Rhodobacter sphaeroides 2.4.1: involvement of the FnrL protein. J. Bacteriol. 180:2228-2231.
-
(1998)
J. Bacteriol
, vol.180
, pp. 2228-2231
-
-
Mouncey, N.J.1
Kaplan, S.2
-
25
-
-
0033551083
-
y from Rhodobacter sphaeroides is functional in respiratory but not in photosynthetic electron transfer
-
y from Rhodobacter sphaeroides is functional in respiratory but not in photosynthetic electron transfer. Proc. Natl. Acad. Sci. USA 96:4348-4353.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 4348-4353
-
-
Myllykallio, H.1
Zannoni, D.2
Daldal, F.3
-
26
-
-
0034544593
-
3 oxidase in clinically relevant proteobacteria?
-
3 oxidase in clinically relevant proteobacteria? Trends Microbiol. 8:542-543.
-
(2000)
Trends Microbiol
, vol.8
, pp. 542-543
-
-
Myllykallio, H.1
Liebl, U.2
-
27
-
-
0030809565
-
Assignment and functional role of the cyoABCDE gene products required for the Escherichia coli bo-type quinol oxidase
-
Nakamura, H., K. Saiki, T. Mogi, and Y. Anraku. 1997. Assignment and functional role of the cyoABCDE gene products required for the Escherichia coli bo-type quinol oxidase. J. Biochem. 122:415-421.
-
(1997)
J. Biochem
, vol.122
, pp. 415-421
-
-
Nakamura, H.1
Saiki, K.2
Mogi, T.3
Anraku, Y.4
-
28
-
-
0034387983
-
SRP-dependent co-translational targeting and SecA-dependent translocation analyzed as individual steps in the export of a bacterial protein
-
Neumann-Haefelin, C., U. Schäfer, M. Müller, and H.-G. Koch. 2000. SRP-dependent co-translational targeting and SecA-dependent translocation analyzed as individual steps in the export of a bacterial protein. EMBO J. 19:6419-6426.
-
(2000)
EMBO J
, vol.19
, pp. 6419-6426
-
-
Neumann-Haefelin, C.1
Schäfer, U.2
Müller, M.3
Koch, H.-G.4
-
29
-
-
0033514508
-
3 terminal oxidase of Rhodobacter sphaeroides: Structural and functional implications for the regulation of spectral complex formation
-
3 terminal oxidase of Rhodobacter sphaeroides: structural and functional implications for the regulation of spectral complex formation. Biochemistry 38:2688-2696.
-
(1999)
Biochemistry
, vol.38
, pp. 2688-2696
-
-
Oh, J.-I.1
Kaplan, S.2
-
30
-
-
0035107555
-
Generalized approach to the regulation and integration of gene expression
-
Oh, J.-I., and S. Kaplan. 2001. Generalized approach to the regulation and integration of gene expression. Mol. Microbiol. 39:1116-1123.
-
(2001)
Mol. Microbiol
, vol.39
, pp. 1116-1123
-
-
Oh, J.-I.1
Kaplan, S.2
-
31
-
-
0037013310
-
3 cytochrome c oxidase of Rhodobacter sphaeroides 2.4.1
-
3 cytochrome c oxidase of Rhodobacter sphaeroides 2.4.1. J. Biol. Chem. 277:16220-16228.
-
(2002)
J. Biol. Chem
, vol.277
, pp. 16220-16228
-
-
Oh, J.-I.1
Kaplan, S.2
-
32
-
-
0035371783
-
A novel scenario for the evolution of haem-copper oxygen reductases
-
Pereira, M. M., M. Santana, and M. Teixera. 2001. A novel scenario for the evolution of haem-copper oxygen reductases. Biochim. Biophys. Acta 1505:185-208.
-
(2001)
Biochim. Biophys. Acta
, vol.1505
, pp. 185-208
-
-
Pereira, M.M.1
Santana, M.2
Teixera, M.3
-
35
-
-
0027469984
-
Genes for a microaerobically induced oxidase complex in Bradyrhizobium japonicum are essential for a nitrogen-fixing endosymbiosis
-
Preisig, O., D. Anthamatten, and H. Hennecke. 1993. Genes for a microaerobically induced oxidase complex in Bradyrhizobium japonicum are essential for a nitrogen-fixing endosymbiosis. Proc. Natl. Acad. Sc. USA 90:3309-3313.
-
(1993)
Proc. Natl. Acad. Sc. USA
, vol.90
, pp. 3309-3313
-
-
Preisig, O.1
Anthamatten, D.2
Hennecke, H.3
-
36
-
-
0029670068
-
A high-affinity cbb3-type cytochrome oxidase terminates the symbiosis-specific respiratory chain of Bradyrhizobium japonicum
-
Preisig, O., R. Zufferey, L. Thöny-Meyer, C. Appleby, and H. Hennecke. 1996. A high-affinity cbb3-type cytochrome oxidase terminates the symbiosis-specific respiratory chain of Bradyrhizobium japonicum. J. Bacteriol. 178: 1532-1538.
-
(1996)
J. Bacteriol
, vol.178
, pp. 1532-1538
-
-
Preisig, O.1
Zufferey, R.2
Thöny-Meyer, L.3
Appleby, C.4
Hennecke, H.5
-
37
-
-
0642283837
-
Cytochrome c oxidase: Structure, function, and physiology of a redox-driven molecular machine
-
Richter, O.-M. H., and B. Ludwig. 2003. Cytochrome c oxidase: structure, function, and physiology of a redox-driven molecular machine. Rev. Physiol. Biochem. Pharmacol. 147:47-74.
-
(2003)
Rev. Physiol. Biochem. Pharmacol
, vol.147
, pp. 47-74
-
-
Richter, O.-M.H.1
Ludwig, B.2
-
38
-
-
0029999853
-
Probing a role of subunit IV of the Escherichia coli bo-type ubiquinol oxidase by deletion and cross-linking analyses
-
Saiki, K., H. Nakamura, T. Mogi, and Y. Anraku. 1996. Probing a role of subunit IV of the Escherichia coli bo-type ubiquinol oxidase by deletion and cross-linking analyses. J. Biol. Chem. 271:15336-15344.
-
(1996)
J. Biol. Chem
, vol.271
, pp. 15336-15344
-
-
Saiki, K.1
Nakamura, H.2
Mogi, T.3
Anraku, Y.4
-
39
-
-
0004136246
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1989)
Molecular cloning: A laboratory manual
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
40
-
-
0028226882
-
Cytochrome oxidase evolved by tinkering with denitrification enzymes
-
Saraste, M., and J. Castresana. 1994. Cytochrome oxidase evolved by tinkering with denitrification enzymes. FEBS Lett. 341:1-4.
-
(1994)
FEBS Lett
, vol.341
, pp. 1-4
-
-
Saraste, M.1
Castresana, J.2
-
41
-
-
0023472472
-
Tricine-sodium dodecyl sulfate Polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa
-
Schägger, H., and G. von Jagow. 1987. Tricine-sodium dodecyl sulfate Polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa. Anal. Biochem. 166:368-379.
-
(1987)
Anal. Biochem
, vol.166
, pp. 368-379
-
-
Schägger, H.1
von Jagow, G.2
-
42
-
-
0026409298
-
Blue native electrophoresis for isolation of membrane protein complexes in enzymatically active form
-
Schägger, H., and G. von Jagow. 1991. Blue native electrophoresis for isolation of membrane protein complexes in enzymatically active form. Anal. Biochem. 199:223-231.
-
(1991)
Anal. Biochem
, vol.199
, pp. 223-231
-
-
Schägger, H.1
von Jagow, G.2
-
44
-
-
72849182812
-
A requirement for sodium in the growth of Rhodopseudomonas sphaeroides
-
Sistrom, W. R. 1960. A requirement for sodium in the growth of Rhodopseudomonas sphaeroides. J. Gen. Microbiol. 22:778-785.
-
(1960)
J. Gen. Microbiol
, vol.22
, pp. 778-785
-
-
Sistrom, W.R.1
-
45
-
-
0036382724
-
The X-ray crystal structure of wild type and EQ(I-286) mutant cytochrome c oxidase from Rhodobacter sphaeroides
-
Svensson-Ek, M., J. Abramson, G. Larsson, S. Törnroth, P. Brzezinski, and S. Iwata. 2002. The X-ray crystal structure of wild type and EQ(I-286) mutant cytochrome c oxidase from Rhodobacter sphaeroides. J. Mol. Biol. 321:329-339.
-
(2002)
J. Mol. Biol
, vol.321
, pp. 329-339
-
-
Svensson-Ek, M.1
Abramson, J.2
Larsson, G.3
Törnroth, S.4
Brzezinski, P.5
Iwata, S.6
-
46
-
-
0035946912
-
The RegB/RegA two-component regulatory system controls synthesis of photosynthesis and respiratory electron transfer components in Rhodobacter capsulatus
-
Swem, L. R., S. Elsen, T. H. Bird, D. L. Swem, H.-G. Koch, H. Myllykallio, F. Daldal, and C. E. Bauer. 2001. The RegB/RegA two-component regulatory system controls synthesis of photosynthesis and respiratory electron transfer components in Rhodobacter capsulatus. J. Mol. Biol. 309:121-138.
-
(2001)
J. Mol. Biol
, vol.309
, pp. 121-138
-
-
Swem, L.R.1
Elsen, S.2
Bird, T.H.3
Swem, D.L.4
Koch, H.-G.5
Myllykallio, H.6
Daldal, F.7
Bauer, C.E.8
-
47
-
-
0036233407
-
3 oxidase expression by multiple regulators in Rhodobacter capsulatus
-
3 oxidase expression by multiple regulators in Rhodobacter capsulatus. J. Bacteriol. 184:2815-2820.
-
(2002)
J. Bacteriol
, vol.184
, pp. 2815-2820
-
-
Swem, D.L.1
Bauer, C.E.2
-
48
-
-
0017170673
-
An improved staining procedure for the detection of the peroxidase activity of cytochrome P-450 on sodium dodecyl sulfate Polyacrylamide gels
-
Thomas, P. E., D. Ryan, and W. Levin. 1976. An improved staining procedure for the detection of the peroxidase activity of cytochrome P-450 on sodium dodecyl sulfate Polyacrylamide gels. Anal. Biochem. 75:168-176
-
(1976)
Anal. Biochem
, vol.75
, pp. 168-176
-
-
Thomas, P.E.1
Ryan, D.2
Levin, W.3
-
49
-
-
0027969974
-
The ccoNOQP gene cluster codes for a cb-type cytochrome oxidase that functions in aerobic respiration of Rhodobacter capsulatus
-
Thöny-Meyer, L., C. Beck, O. Preisig, and H. Hennecke. 1994. The ccoNOQP gene cluster codes for a cb-type cytochrome oxidase that functions in aerobic respiration of Rhodobacter capsulatus. Mol. Microbiol. 174:705-716.
-
(1994)
Mol. Microbiol
, vol.174
, pp. 705-716
-
-
Thöny-Meyer, L.1
Beck, C.2
Preisig, O.3
Hennecke, H.4
-
50
-
-
0029942862
-
-
Tsukhara, T., H. Aoyama, E. Yamashita, T. Tomizaki, H. Yamaguchi, K. Shinzawa-Itoh, R. Nakashima, R. Yaono, and S. Yoshikawa. 1996. The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 Å Science 272:1136-1144.
-
Tsukhara, T., H. Aoyama, E. Yamashita, T. Tomizaki, H. Yamaguchi, K. Shinzawa-Itoh, R. Nakashima, R. Yaono, and S. Yoshikawa. 1996. The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 Å Science 272:1136-1144.
-
-
-
-
52
-
-
0027340293
-
2 into intracytoplasmic membrane vesicles of Rhodobacter capsulatus requires a peripheral membrane protein
-
2 into intracytoplasmic membrane vesicles of Rhodobacter capsulatus requires a peripheral membrane protein. Mol. Microbiol. 7:167-176.
-
(1993)
Mol. Microbiol
, vol.7
, pp. 167-176
-
-
Wieseler, B.1
Müller, M.2
-
53
-
-
0031054250
-
Isolation, analysis and deletion of the gene coding for subunit IV of cytochrome c oxidase in Paracoccus denitrificans
-
Witt, H., and B. Ludwig. 1997. Isolation, analysis and deletion of the gene coding for subunit IV of cytochrome c oxidase in Paracoccus denitrificans. J. Biol. Chem. 272:5514-5517.
-
(1997)
J. Biol. Chem
, vol.272
, pp. 5514-5517
-
-
Witt, H.1
Ludwig, B.2
-
54
-
-
23344445815
-
Campylobacter jejuni gene expression in the chick cecum: Evidence for adaptation to a low oxygen concentration
-
Woodall., C. A., M. A. Jones, P. A. Barrow, J. Hinds, G. L. Marsden, D. J. Kelly, N. Dorrell, B. W. Wren, and D. J. Maskell. 2005. Campylobacter jejuni gene expression in the chick cecum: evidence for adaptation to a low oxygen concentration. Infect. Immun. 73:5278-5285.
-
(2005)
Infect. Immun
, vol.73
, pp. 5278-5285
-
-
Woodall, C.A.1
Jones, M.A.2
Barrow, P.A.3
Hinds, J.4
Marsden, G.L.5
Kelly, D.J.6
Dorrell, N.7
Wren, B.W.8
Maskell, D.J.9
-
57
-
-
10444275550
-
Nitric oxide reductases of prokaryotes with emphasis on the respiratory, heme-copper oxidase type
-
Zumft, W. G. 2005. Nitric oxide reductases of prokaryotes with emphasis on the respiratory, heme-copper oxidase type. J. Inorg. Biochem. 99:194-215.
-
(2005)
J. Inorg. Biochem
, vol.99
, pp. 194-215
-
-
Zumft, W.G.1
|