Isolation and characterization of carnocyclin A, a novel circular bacteriocin produced by Carnobacterium maltaromaticum UAL307

Applied and Environmental Microbiology

Volumn 74, Issue 15, 2008, Pages 4756-4763

  Martin Visscher, Leah A ^a   Van Belkum, Marco J ^a   Garneau Tsodikova, Sylvie ^a,b   Whittal, Randy M ^a   Zheng, Jing ^a   McMullen, Lynn M ^a   Vederas, John C ^a  

^a UNIVERSITY OF ALBERTA   (Canada)

^b UNIVERSITY OF MICHIGAN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACIDS; AMINO ACIDS; DESORPTION; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; MASS SPECTROMETERS; MASS SPECTROMETRY; MOLECULAR MASS; ORGANIC ACIDS; SPECTROMETERS; SPECTROMETRY; SPECTRUM ANALYSIS;

AQUEOUS CONDITIONS; BACTERIOCIN; BACTERIOCINS; COVALENT LINKAGES; CULTURE SUPERNATANT; CYCLIC STRUCTURES; EDMAN SEQUENCING; FRESH PORK; GENETIC SEQUENCING; GRAM-POSITIVE ORGANISMS; ISOLATION AND CHARACTERIZATION; LINEAR SEQUENCES; LISTERIA SPECIES; MATRIX-ASSISTED LASER DESORPTION IONIZATION; PH RANGE; POTENT ACTIVITY; STRUCTURAL STUDIES; TANDEM MASS SPECTROMETRY; TIME-OF FLIGHT MASS SPECTROMETRY;

AMINES;

BACTERIAL PROTEIN; BACTERIOCIN; CARNOBACTERIOCIN BM1; CARNOCYCLIN A; CHYMOTRYPSIN A; PISCICOLIN 126; TRYPSIN;

ANTIMICROBIAL ACTIVITY; BACTERIUM; GENETIC ANALYSIS; IDENTIFICATION METHOD; MASS SPECTROMETRY; MEAT; PEPTIDE; PH; PIG;

AMINO TERMINAL SEQUENCE; CARBOXY TERMINAL SEQUENCE; CARNOBACTERIUM MALTAROMATICUM; CONFERENCE PAPER; GENE SEQUENCE; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MOLECULAR WEIGHT; NONHUMAN; PH; PROTEIN ANALYSIS; PROTEIN DEGRADATION; PROTEIN ISOLATION; PROTEIN STABILITY; PROTEIN STRUCTURE; SUPERNATANT; TANDEM MASS SPECTROMETRY; TEMPERATURE;

ANIMALS; BACTERIOCINS; BASE SEQUENCE; CIRCULAR DICHROISM; DNA PRIMERS; GRAM-POSITIVE BACTERIA; MEAT; MOLECULAR SEQUENCE DATA; PEPTIDES, CYCLIC; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; STAPHYLOCOCCUS AUREUS; SWINE;

CARNOBACTERIUM; CARNOBACTERIUM MALTAROMATICUM; LISTERIA; POSIBACTERIA;

EID: 49449106377     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.00817-08     Document Type: Conference Paper

References (53)

1. Ahn, C., and M. E. Stiles. 1990. Plasmid-associated bacteriocin production by a strain of Carnobacterium piscicola from meat. Appl. Environ. Microbiol. 56:2503-2510.
2. Chen, H., and D. G. Hoover. 2003. Bacteriocins and their food applications. Compr. Rev. Food Sci. Food Saf. 2:82-100.
3. Cobos, E. S., V. V. Filimonov, A. Gálvez, N. Maqueda, E. Valdivia, J. C. Martinez, and P. L. Mateo. 2001. AS-48: a circular protein with an extremely stable globular structure. FEBS Lett. 505:379-382.
4. Cotter, P. D., C. Hill, and R. P. Ross. 2005. Bacteriocins: developing innate immunity for food. Nat. Rev. Microbiol. 3:777-788.
5. Craik, D. J., N. L. Daly, I. Saska, M. Trabi, and K. J. Rosengren. 2003. Structures of naturally occurring circular proteins from bacteria. J. Bacteriol. 185:4011-4021.
6. Dai, Y. Q., R. M. Whittal, and L. Li. 1999. Two-layer sample preparation: a method for MALDI-MS analysis of complex peptide and protein mixtures. Anal. Chem. 71:1087-1091.
7. Deegan, L. H., P. D. Cotter, C. Hill, and P. Ross. 2006. Bacteriocins: biological tools for bio-preservation and shelf-life extension. Int. Dairy J. 16:1058-1071.
8. Derksen, D. J., J. L. Stymiest, and J. C. Vederas. 2006. Antimicrobial leucocin analogues with a disulfide bridge replaced by a carbocycle or by noncovalent interactions of allyl glycine residues. J. Am. Chem. Soc. 128:14252-14253.
9. Drider, D., G. Fimland, Y. Héchard, L. M. McMullen, and H. Prevost. 2006. The continuing story of class IIa bacteriocins. Microbiol. Mol. Biol. Rev. 70:564-582.
10. Eijsink, V. G. H., L. Axelsson, D. B. Diep, L. S. Håvarstein, H. Holo, and I. F. Nes. 2002. Production of class II bacteriocins by lactic acid bacteria; an example of biological warfare and communication. Antonie van Leeuwenhoek Int. J. Gen. Mol. Microbiol. 81:639-654.
11. Franz, C. M. A. P., U. Schillinger, and W. H. Holzapfel. 1996. Production and characterization of enterocin 900, a bacteriocin produced by Enterococcus faecium BFE 900 from black olives. Int. J. Food Microbiol. 29:255-270.
12. Franz, C. M. A. P., M. J. van Belkum, R. W. Worobo, J. C. Vederas, and M. E. Stiles. 2000. Characterization of the genetic locus responsible for production and immunity of carnobacteriocin A: the immunity gene confers cross-protection to enterocin B. Microbiology 146:621-631.
13. Franz, C. M. A. P., R. W. Worobo, L. E. N. Quadri, U. Schillinger, W. H. Holzapfel, J. C. Vederas, and M. E. Stiles. 1999. Atypical genetic locus associated with constitutive production of enterocin B by Enterococcus faecium BFE 900. Appl. Environ. Microbiol. 65:2170-2178.
14. Gallagher, N. L. F., M. Sailer, W. P. Niemczura, T. T. Nakashima, M. E. Stiles, and J. C. Vederas. 1997. Three-dimensional structure of leucocin A in trifluoroethanol and dodecylphosphocholine micelles: spatial location of residues critical for biological activity in type IIa bacteriocins from lactic acid bacteria. Biochemistry 36:15062-15072.
15. Garneau, S., N. I. Martin, and J. C. Vederas. 2002. Two-peptide bacteriocins produced by lactic acid bacteria. Biochimie 84:577-592.
16. Gasteiger, E., C. Hoogland, A. Gattiker, S. Duvaud, M. R. Wilkins, R. D. Appel, and A. Bairoch. 2005. Protein identification and analysis tools on the ExPASy server, p. 571-607. In J. M. Walker (ed.), The proteomics protocols handbook. Humana Press, Totowa, NJ.
17. González, C., G. M. Langdon, M. Bruix, A. Gálvez, E. Valdivia, M. Maqueda, and M. Rico. 2000. Bacteriocin AS-48, a microbial cyclic polypeptide structurally and functionally related to mammalian NK-lysin. Proc. Natl. Acad. Sci. USA 97:11221-11226.
18. Gonzalez, C. F., and B. S. Kunka. 1987. Plasmid-associated bacteriocin production and sucrose fermentation in Pediococcus acidilactici. Appl. Environ. Microbiol. 53:2534-2538.
19. Gursky, L. J., N. I. Martin, D. J. Derksen, M. J. van Belkum, K. Kaur, J. C. Vederas, M. E. Stiles, and L. M. McMullen. 2006. Production of piscicolin 126 by Carnobacterium maltaromaticum UAL26 is controlled by temperature and induction peptide concentration. Arch. Microbiol. 186:317-325.
20. Héchard, Y., B. Dérijard, F. Letellier, and Y. Cenatiempo. 1992. Characterization and purification of mesentericin Y105, an anti-Listeria bacteriocin from Leuconostoc mesenteroides. J. Gen. Microbiol. 138:2725-2731.
21. Jack, R. W., J. Wan, J. Gordon, K. Harmark, B. E. Davidson, A. J. Hillier, R. E. H. Wettenhall, M. W. Hickey, and M. J. Coventry. 1996. Characterization of the chemical and antimicrobial properties of piscicolin 126, a bacteriocin produced by Carnobacterium piscicola JG126. Appl. Environ. Microbiol. 62:2897-2903.
22. Jeziorowski, A., and D. M. Gordon. 2007. Evolution of microcin V and colicin Ia plasmids in Escherichia coli. J. Bacteriol. 189:7045-7052.
23. Kalmokoff, M. L., T. D. Cyr, M. A. Hefford, M. F. Whitford, and R. M. Teather. 2003. Butyrivibriocin ARlO, a new cyclic bacteriocin produced by the ruminai anaerobe Butyrivibrio fibrisolvens AR10: characterization of the gene and peptide. Can. J. Microbiol. 49:763-773.
24. Kaur, K., L. C. Andrew, D. S. Wishart, and J. C. Vederas. 2004. Dynamic relationships among type IIa bacteriocins: temperature effects on antimicrobial activity and on structure of the C-terminal amphipathic alpha helix as a receptor-binding region. Biochemistry 43:9009-9020.
25. Kawai, Y., Y. Ishii, K. Arakawa, K. Uemura, B. Saitoh, J. Nishimura, H. Kitazawa, Y. Yamazaki, Y. Tateno, T. Itoh, and T. Saitoh. 2004. Structural and functional differences in two cyclic bacteriocins with the same sequences produced by lactobacilli. Appl. Environ. Microbiol. 70:2906-2911.
26. Kawai, Y., R. Kemperman, J. Kok, and T. Saito. 2004. The circular bacteriocins gassericin A and circularin A. Curr. Protein Pept. Sci. 5:393-398.
27. Kawai, Y., T. Saito, H. Kitazawa, and T. Itoh. 1998. Gassericin A; an uncommon cyclic bacteriocin produced by Lactobacillus gasseri LA39 linked at N- and C-terminal ends. Biosci. Biotechnol. Biochem. 62:2438-2440.
28. Kawai, Y., T. Saito, M. Suzuki, and T. Itoh. 1998. Sequence analysis by cloning of the structural gene of gassericin A, a hydrophobic bacteriocin produced by Lactobacillus gasseri LA39. Biosci. Biotechnol. Biochem. 62: 887-892.
29. Kawulka, K., T. Sprules, R. T. McKay, P. Mercier, C. M. Diaper, P. Zuber, and J. C. Vederas. 2003. Structure of subtilosin A, an antimicrobial peptide from Bacillus subtilis with unusual posttranslational modifications linking cysteine sulfurs to alpha-carbons of phenylalanine and threonine. J. Am. Chem. Soc. 125:4726-4727.
30. Kawulka, K. E., T. Sprules, C. M. Diaper, R. M. Whittal, R. T. McKay, P. Mercier, P. Zuber, and J. C. Vederas. 2004. Structure of subtilosin A, a cyclic antimicrobial peptide from Bacillus subtilis with unusual sulfur to alpha-carbon cross-links: formation and reduction of alpha-thio-alpha-amino acid derivatives. Biochemistry 43:3385-3395.
31. Kemperman, R., M. Jonker, A. Nauta, O. P. Kuipers, and J. Kok. 2003. Functional analysis of the gene cluster involved in production of the bacteriocin circularin A by Clostridium beijerinckii ATCC 25752. Appl. Environ. Microbiol. 69:5839-5848.
32. Kemperman, R., A. Kuipers, H. Karsens, A. Nauta, O. Kuipers, and J. Kok. 2003. Identification and characterization of two novel clostridial bacteriocins, circularin A and closticin 574. Appl. Environ. Microbiol. 69:1589-1597.
33. Klaenhammer, T. R. 1993. Genetics of bacteriocins produced by lactic acid bacteria. FEMS Microbiol. Rev. 12:39-85.
34. Leer, R. J., J. M. B. M. van der Vossen, M. van Giezen, J. M. van Noort, and P. H. Pouwels. 1995. Genetic analysis of acidocin B, a novel bacteriocin produced by Lactobacillus acidophilus. Microbiology 141:1629-1635.
35. Ma, B., K. Z. Zhang, C. Hendrie, C. Z. Liang, M. Li, A. Doherty-Kirby, and G. Lajoie. 2003. PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry. Rapid Commun. Mass Spectrom. 17:2337-2342.
36. Maqueda, M., M. Sánchez-Hidalgo, M. Fernández, M. Montalbán-López, E. Valdivia, and M. Martínez-Bueno. 2008. Genetic features of circular bacteriocins produced by gram-positive bacteria. FEMS Microbiol. Rev. 32:2-22.
37. Martínez-Bueno, M., M. Maqueda, A. Gálvez, B. Samyn, J. Van Beeumen, J. Coyette, and E. Valdivia. 1994. Determination of the gene sequence and the molecular structure of the enterococcal peptide antibiotic AS-48. J. Bacteriol. 176:6334-6339.
38. Morrow, J. A., M. L. Segall, S. Lund-Katz, M. C. Phillips, M. Knapp, B. Rupp, and K. H. Weisgraber. 2000. Differences in stability among the human apolipoprotein E isoforms determined by the amino-terminal domain. Biochemistry 39:11657-11666.
39. Nes, I. F., S. S. Yoon, and W. B. Diep. 2007. Ribosomally synthesiszed antimicrobial peptides (bacteriocins) in lactic acid bacteria: a review. Food Sci. Biotechnol. 16:675-690.
40. Quadri, L. E. N., M. Sailer, K. L. Roy, J. C. Vederas, and M. E. Stiles. 1994. Chemical and genetic characterization of bacteriocins produced by Carnobacterium piscicola LV17B. J. Biol. Chem. 269:12204- 12211.
41. Ryan, M. P., M. C. Rea, C. Hill, and R. P. Ross. 1996. An application in cheddar cheese manufacture for a strain of Lactococcus lactis producing a novel broad-spectrum bacteriocin, lacticin 3147. Appl. Environ. Microbiol. 62:612-619.
42. Sambrook, J., and D. W. Russell. 2001. Molecular cloning: a laboratory manual, 3rd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
43. Samyn, B., M. Martínez-Bueno, B. Devreese, M. Maqueda, A. Gálvez, E. Valdivia, J. Coyette, and J. Van Beeumen. 1994. The cyclic structure of the enterococcal peptide antibiotic AS-48. FEBS Lett. 352:87-90.
44. Sánchez-Barrena, M. J., M. Martínez-Ripoll, A. Gálvez, E. Valdivia, M. Maqueda, V. Cruz, and A. Albert. 2003. Structure of bacteriocin AS-48: from soluble state to membrane bound state. J. Mol. Biol. 334:541-549.
45. Schägger, H., and G. von Jagow. 1987. Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 kDa to 100 kDa. Anal. Biochem. 166:368-379.
46. Schillinger, U., M. Kaya, and F. K. Lücke. 1991. Behavior of Listeria monocytogenes in meat and its control by a bacteriocin-producing strain of Lactobacillus sake. J. Appl. Bacteriol. 70:473-478.
47. Uteng, M., H. H. Hauge, P. R. L. Markwick, G. Fimland, D. Mantzilas, J. Nissen-Meyer, and C. Muhle-Goll. 2003. Three-dimensional structure in lipid micelles of the pediocin-like antimicrobial peptide sakacin P and a sakacin P variant that is structurally stabilized by an inserted C-terminal disulfide bridge. Biochemistry 42:11417-11426.
48. van Belkum, M. J., and M. E. Stiles. 2000. Nonlantibiotic antibacterial peptides from lactic acid bacteria. Nat. Prod. Rep. 17:323-335.
49. Wang, Y. J., M. E. Henz, N. L. F. Gallagher, S. Y. Chai, A. C. Gibbs, L. Z. Yan, M. E. Stiles, D. S. Wishart, and J. C. Vederas. 1999. Solution structure of carnobacteriocin B2 and implications for structure-activity relationships among type IIa bacteriocins from lactic acid bacteria. Biochemistry 38:15438-15447.
50. Wirawan, R. E., K. M. Swanson, T. Kleffmann, R. W. Jack, and J. R. Tagg. 2007. Uberolysin: a novel cyclic bacteriocin produced by Streptococcus uberis. Microbiology 153:1619-1630.
51. Worobo, R. W., M. J. van Belkum, M. Sailer, K. L. Roy, J. C. Vederas, and M. E. Stiles. 1995. A signal peptide secretion-dependent bacteriocin from Carnobacterium divergens. J. Bacteriol. 177:3143-3149.
52. Yanisch-Perron, C., J. Vieira, and J. Messing. 1985. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and Puc19 vectors. Gene 33:103-119.
53. Zheng, G., L. Z. Yan, J. C. Vederas, and P. Zuber. 1999. Genes of the sbo-alb locus of Bacillus subtilis are required for production of the antilisterial bacteriocin subtilosin. J. Bacteriol. 181:7346- 7355.