-
1
-
-
0035296987
-
Making chips to probe genes
-
March
-
S.K. Moore, "Making Chips to Probe Genes," IEEE Spectrum, March 2001, pp. 54-60.
-
(2001)
IEEE Spectrum
, pp. 54-60
-
-
Moore, S.K.1
-
2
-
-
0034659898
-
Genomics, gene expression and DNA arrays
-
D.J. Lockhart and E.A. Winzeler, "Genomics, Gene Expression and DNA Arrays," Nature, vol. 405, 2000, pp. 827-846.
-
(2000)
Nature
, vol.405
, pp. 827-846
-
-
Lockhart, D.J.1
Winzeler, E.A.2
-
3
-
-
0042418821
-
-
European Molecular Biology Laboratory, Outstation Hinxton - The European Bioinformatics Institute, Cambridge CB10 ISD UK
-
A. Brazma and J. Vilo, "Minireview: Gene Expression Data Analysis," European Molecular Biology Laboratory, Outstation Hinxton - The European Bioinformatics Institute, Cambridge CB10 ISD UK, 2000.
-
(2000)
Minireview: Gene Expression Data Analysis
-
-
Brazma, A.1
Vilo, J.2
-
4
-
-
4243687985
-
-
Department of Physic and Center for Materials Physics, and Department of Biology and the Life Sciences Consortium, Penndylvania State University, University Park, PA 16802
-
N.S. Halter, A. Maritan, M. Cieplak, N.V. Fedoroff, and J.R. Bamavar, "Dynamic Modelling of Gene Expression Data," Department of Physic and Center for Materials Physics, and Department of Biology and the Life Sciences Consortium, Penndylvania State University, University Park, PA 16802, 2000.
-
(2000)
Dynamic Modelling of Gene Expression Data
-
-
Halter, N.S.1
Maritan, A.2
Cieplak, M.3
Fedoroff, N.V.4
Bamavar, J.R.5
-
5
-
-
0033536012
-
Gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays
-
U. Alon, N. Barkai, D.A. Notterman, K. Gish, S. Ybarra, D. Mack, and A.J. Levine, "Gene Expression Revealed by Clustering Analysis of Tumor and Normal Colon Tissues Probed by Oligonucleotide Arrays," in Proceedings of the National Academy of Science USA, 1999, vol. 96, pp. 6745-6750.
-
(1999)
Proceedings of the National Academy of Science USA
, vol.96
, pp. 6745-6750
-
-
Alon, U.1
Barkai, N.2
Notterman, D.A.3
Gish, K.4
Ybarra, S.5
Mack, D.6
Levine, A.J.7
-
6
-
-
13044304179
-
Distinctive gene expression patterns in human mammary epithelial cells and breast cancers
-
C.M. Perou, S.S. Jeffrey, M. van de Rijn, C.A. Rees, M.B. Eisen, D.T. Ross, A. Pergamenschikov, C.F. Williams, S.X. Zhu, J.C.F. Lee, D. Lashkari, D. Shalon, P.O. Brown, and D. Botstein, "Distinctive Gene Expression Patterns in Human Mammary Epithelial Cells and Breast Cancers," in Proceedings of the National Academy of Science USA, 1999, vol. 96, pp. 9212-9217.
-
(1999)
Proceedings of the National Academy of Science USA
, vol.96
, pp. 9212-9217
-
-
Perou, C.M.1
Jeffrey, S.S.2
Van De Rijn, M.3
Rees, C.A.4
Eisen, M.B.5
Ross, D.T.6
Pergamenschikov, A.7
Williams, C.F.8
Zhu, S.X.9
Lee, J.C.F.10
Lashkari, D.11
Shalon, D.12
Brown, P.O.13
Botstein, D.14
-
7
-
-
0032787555
-
Microarray analysis of drosophila development during metamorphosis
-
K.P. White, S.A. Rifkin, P. Hurban, and D.S. Hogness, "Microarray Analysis of Drosophila Development during Metamorphosis," Science, vol. 286, 1999, pp. 2179-2184.
-
(1999)
Science
, vol.286
, pp. 2179-2184
-
-
White, K.P.1
Rifkin, S.A.2
Hurban, P.3
Hogness, D.S.4
-
8
-
-
0034800371
-
Principal component analysis for clustering gene expression data
-
K.Y. Yeung and W.L. Ruzzo, "Principal Component Analysis for Clustering Gene Expression Data," Bioinformatics, vol. 17, no. 9, 2001, pp. 763-774.
-
(2001)
Bioinformatics
, vol.17
, Issue.9
, pp. 763-774
-
-
Yeung, K.Y.1
Ruzzo, W.L.2
-
9
-
-
85089829232
-
Interactive visualization and analysis for gene expression data
-
Big Island, HI, Jan.
-
C. Tang, L. Zhang, and A. Zhang, "Interactive Visualization and Analysis for Gene Expression Data," in IEEE Proceedings of the Hawaii International Conference on System Sciences. Big Island, HI, Jan. 2002, vol. 6, pp. 143-166.
-
(2002)
IEEE Proceedings of the Hawaii International Conference on System Sciences
, vol.6
, pp. 143-166
-
-
Tang, C.1
Zhang, L.2
Zhang, A.3
-
11
-
-
0004278772
-
-
Stanford University
-
M. Eisen, ScanAlyze User Manual, Stanford University, 1999, http://rana.lbl.gov/EisenSoftware.htm.
-
(1999)
ScanAlyze User Manual
-
-
Eisen, M.1
-
12
-
-
4944255436
-
-
Axon Instruments Inc. GenePix Pro 3.0, 2001.
-
(2001)
GenePix Pro 3.0
-
-
-
15
-
-
0003432145
-
Dapple: Improved techniques for finding spots on DNA microarrays
-
University of Washington
-
J. Buhler, T. Ideker, and D. Haynor, "Dapple: Improved Techniques for Finding Spots on DNA Microarrays," Technical Report UWTR 2000-08-05, University of Washington.
-
Technical Report
, vol.UWTR 2000-08-05
-
-
Buhler, J.1
Ideker, T.2
Haynor, D.3
-
17
-
-
0031246430
-
Ratio-based decisions and the quantitative analysis of cDNA microarray images
-
Y. Chen, E.R. Dougherty, and M.L. Bittner, "Ratio-Based Decisions and the Quantitative Analysis of cDNA Microarray Images," Journal of Biomedical Optics, vol. 2, 1997, pp. 364-374. http://www.nhgri.nih.gov/DIR/LCG/ 15K/HTML/img_analysis.html.
-
(1997)
Journal of Biomedical Optics
, vol.2
, pp. 364-374
-
-
Chen, Y.1
Dougherty, E.R.2
Bittner, M.L.3
-
18
-
-
0035433128
-
Quantitative quality control in microarray image processing and data acquisition
-
X. Wang, S. Ghosh, and S.W. Guo, "Quantitative Quality Control in Microarray Image Processing and Data Acquisition," Nucleic Acids Research, vol. 29, no. 15, 2001, p. e75.
-
(2001)
Nucleic Acids Research
, vol.29
, Issue.15
, pp. 75
-
-
Wang, X.1
Ghosh, S.2
Guo, S.W.3
-
19
-
-
84904118359
-
Microarray gridding by mathematical morphology
-
Oct.
-
J. Barrera, D.O. Dantas, R.F. Hashimoto, and R. Hirata, Jr., "Microarray Gridding by Mathematical Morphology," in Proceedings of XIV Brazilian Symposium on Computer Graphics and Image Processing 2001, Oct. 2001, pp. 112-119.
-
(2001)
Proceedings of XIV Brazilian Symposium on Computer Graphics and Image Processing 2001
, pp. 112-119
-
-
Barrera, J.1
Dantas, D.O.2
Hashimoto, R.F.3
Hirata Jr., R.4
-
20
-
-
0036064757
-
Automated analysis of gene-microarray images
-
R. Baumgartner, S. Booth, and C. Bowman, "Automated Analysis of Gene-Microarray Images," in Proceedings of Canadian Conference on Electrical and Computer Engineering IEEE CCECE 2002, 2002, vol. 2, pp. 1140-1144.
-
(2002)
Proceedings of Canadian Conference on Electrical and Computer Engineering IEEE CCECE 2002
, vol.2
, pp. 1140-1144
-
-
Baumgartner, R.1
Booth, S.2
Bowman, C.3
-
23
-
-
0031246430
-
Ratio based decisions and the quantitative analysis of cDNA microarray images
-
Y. Chen, E.R. Dougherty, and M.L. Bittner, "Ratio Based Decisions and the Quantitative Analysis of cDNA Microarray Images," Journal of Biomedical Optics, vol. 2, 1997, pp. 364-374.
-
(1997)
Journal of Biomedical Optics
, vol.2
, pp. 364-374
-
-
Chen, Y.1
Dougherty, E.R.2
Bittner, M.L.3
-
24
-
-
0035687554
-
Assessing gene significance from cDNA microarray expression data via mixed models
-
R.D. Wolfinger, G. Gibson, E.D. Wolfinger, L. Bennett, H. Hamadeh, P. Bushel, C. Afshari, and R.S. Paules, "Assessing Gene Significance from cDNA Microarray Expression Data via Mixed Models," Journal of Computational Biology, vol. 8, 2001, pp. 625-637.
-
(2001)
Journal of Computational Biology
, vol.8
, pp. 625-637
-
-
Wolfinger, R.D.1
Gibson, G.2
Wolfinger, E.D.3
Bennett, L.4
Hamadeh, H.5
Bushel, P.6
Afshari, C.7
Paules, R.S.8
-
25
-
-
1342294092
-
Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
-
Y.H. Yang, S. Dudoit, P. Luu, D.M. Lin, V. Peng, J. Ngai, and T.P. Speed, "Normalization for cDNA Microarray Data: A Robust Composite Method Addressing Single and Multiple Slide Systematic Variation," Nucleic Acids Research, vol. 30, no. 4, 2002, p. e15.
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.4
, pp. 15
-
-
Yang, Y.H.1
Dudoit, S.2
Luu, P.3
Lin, D.M.4
Peng, V.5
Ngai, J.6
Speed, T.P.7
-
26
-
-
0037405886
-
Robust adaptive spot segmentation of DNA microarray images
-
A.W.C. Liew, H. Yan, and M. Yang, "Robust Adaptive Spot Segmentation of DNA Microarray Images," Pattern Recognition, vol. 36, 2003, pp. 1251-1254.
-
(2003)
Pattern Recognition
, vol.36
, pp. 1251-1254
-
-
Liew, A.W.C.1
Yan, H.2
Yang, M.3
-
27
-
-
0032561246
-
The transcriptional program of sporulation in budding yeast
-
S. Chu, J. DeRisi, M. Eisen, J. Mulholland, D. Botstein, P.O. Brown, and I. Herskowitz, "The Transcriptional Program of Sporulation in Budding Yeast," Science, no. 282, 1998, pp. 699-705.
-
(1998)
Science
, Issue.282
, pp. 699-705
-
-
Chu, S.1
Derisi, J.2
Eisen, M.3
Mulholland, J.4
Botstein, D.5
Brown, P.O.6
Herskowitz, I.7
-
28
-
-
0032668662
-
Identifying gene regulatory networks from experimental data
-
Lyon, France, March
-
T. Chen, V. Filkov, and S.S. Skiena, "Identifying Gene Regulatory Networks from Experimental Data," in Proceedings of the Third Annual International Conference on Computational Molecular Biology RECOMB99, Lyon, France, March 1999, pp. 94-103.
-
(1999)
Proceedings of the Third Annual International Conference on Computational Molecular Biology RECOMB99
, pp. 94-103
-
-
Chen, T.1
Filkov, V.2
Skiena, S.S.3
-
29
-
-
0033569406
-
Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
-
T.R. Golub, D.K. Slonim, P. Tamayo, C. Huard, M. Gaasenbeek, J.P. Mesirov, H. Coller, M.L. Loh, J.R. Downing, M.A. Caligiuri, C.D. Bloomfield, and E.S. Lander, "Molecular Classification of Cancer: Class Discovery and Class Prediction by Gene Expression Monitoring," Science, vol. 286, no. 5439, 1999, pp. 531-537.
-
(1999)
Science
, vol.286
, Issue.5439
, pp. 531-537
-
-
Golub, T.R.1
Slonim, D.K.2
Tamayo, P.3
Huard, C.4
Gaasenbeek, M.5
Mesirov, J.P.6
Coller, H.7
Loh, M.L.8
Downing, J.R.9
Caligiuri, M.A.10
Bloomfield, C.D.11
Lander, E.S.12
-
30
-
-
0033027794
-
Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation
-
March
-
P. Tamayo, D. Slonim, J. Mesirov, Q. Zhu, S. Kitareewan, E. Dmitrovsky, E.S. Lander, and T.R. Golub, "Interpreting Patterns of Gene Expression with Self-Organizing Maps: Methods and Application to Hematopoietic Differentiation," in Proceedings of the National Academy of Science USA, March 1999, vol. 96, pp. 2907-2912.
-
(1999)
Proceedings of the National Academy of Science USA
, vol.96
, pp. 2907-2912
-
-
Tamayo, P.1
Slonim, D.2
Mesirov, J.3
Zhu, Q.4
Kitareewan, S.5
Dmitrovsky, E.6
Lander, E.S.7
Golub, T.R.8
-
31
-
-
0036721824
-
K-means iterative fisher (KIF) unsupervised clustering algorithm applied to image texture segmentation
-
D.A. Clausi, "K-Means Iterative Fisher (KIF) Unsupervised Clustering Algorithm Applied to Image Texture Segmentation," Pattern Recognition, vol. 35, 2002, pp. 1959-1972.
-
(2002)
Pattern Recognition
, vol.35
, pp. 1959-1972
-
-
Clausi, D.A.1
-
32
-
-
4944227385
-
Gene expression data clustering and visualization using a binary hierarchical clustering framework
-
Adelaide, Australia, Feb.
-
L.K. Szeto, A.W.C. Liew, H. Yan, and S.S. Tang, "Gene Expression Data Clustering and Visualization Using a Binary Hierarchical Clustering Framework," in Proceedings of the First Asia-Pacific Bioinformatics Conference APBC2003, Adelaide, Australia, Feb. 2003, pp. 4-7.
-
(2003)
Proceedings of the First Asia-pacific Bioinformatics Conference APBC2003
, pp. 4-7
-
-
Szeto, L.K.1
Liew, A.W.C.2
Yan, H.3
Tang, S.S.4
-
33
-
-
0042515179
-
Gene expression data clustering and visualization based on a binary hierarchical clustering framework
-
Special Issue on "Biomedical Visualization for Bioinformatics
-
L.K. Szeto, A.W.C. Liew, H. Yan, and S.S. Tang, "Gene Expression Data Clustering and Visualization Based on a Binary Hierarchical Clustering Framework," Special Issue on "Biomedical Visualization for Bioinformatics, Journal of Visual Languages and Computing, vol. 14, 2003, pp. 341-362.
-
(2003)
Journal of Visual Languages and Computing
, vol.14
, pp. 341-362
-
-
Szeto, L.K.1
Liew, A.W.C.2
Yan, H.3
Tang, S.S.4
-
34
-
-
0004161838
-
-
Cambridge University Press, 2nd edition
-
W.H. Press, S.A. Teukolsky, W.T. Vetterling, and B.P. Flanery, Numerical Recipes in C: The Art of Scientific Computing, Cambridge University Press, 2nd edition, 1992.
-
(1992)
Numerical Recipes in C: The Art of Scientific Computing
-
-
Press, W.H.1
Teukolsky, S.A.2
Vetterling, W.T.3
Flanery, B.P.4
-
36
-
-
0034730140
-
Singular value decomposition for genome-wide expression data processing and modeling
-
O. Alter, P.O. Brown, and D. Botstein, "Singular Value Decomposition for Genome-Wide Expression Data Processing and Modeling," in Proceedings of the National Academy of Science USA, 2000, vol. 97, pp. 10101-10106.
-
(2000)
Proceedings of the National Academy of Science USA
, vol.97
, pp. 10101-10106
-
-
Alter, O.1
Brown, P.O.2
Botstein, D.3
-
37
-
-
0034960264
-
Missing value estimation methods for DNA microarrays
-
O. Troyanskaya, M. Cantor, G. Sherlock, P. Brown, Trevor Hastie, R. Tibshirani, D. Botsttein, and R.B. Altman, "Missing Value Estimation Methods for DNA Microarrays," Bioinformatics, vol. 17, no. 6, 2001, pp. 520-525.
-
(2001)
Bioinformatics
, vol.17
, Issue.6
, pp. 520-525
-
-
Troyanskaya, O.1
Cantor, M.2
Sherlock, G.3
Brown, P.4
Hastie, T.5
Tibshirani, R.6
Botsttein, D.7
Altman, R.B.8
-
38
-
-
0002739909
-
Fuzzy image clustering incorporating spatial continuity
-
April
-
A.W.C. Liew, S.H. Leung, and W.H. Lau, "Fuzzy Image Clustering Incorporating Spatial Continuity," in IEE Proceedings-Vision, Image and Signal Processing, April 2000, vol. 147, pp. 185-192.
-
(2000)
IEE Proceedings-vision, Image and Signal Processing
, vol.147
, pp. 185-192
-
-
Liew, A.W.C.1
Leung, S.H.2
Lau, W.H.3
-
41
-
-
0031742022
-
Comprehensive identification of cell cycle-regulated genes of the yeast saccharomyces cerevisiae by microarray hybridization
-
P.T. Spellman, G. Sherlock, M.Q. Zhang, V.R. Iyer, K. Anders, M.B. Eisen, P.O. Brown, D. Botstein, and B. Futcher, "Comprehensive Identification of Cell Cycle-Regulated Genes of the Yeast Saccharomyces Cerevisiae by Microarray Hybridization," Molecular Biology of the Cell, vol. 9, 1998, pp. 3273-3297.
-
(1998)
Molecular Biology of the Cell
, vol.9
, pp. 3273-3297
-
-
Spellman, P.T.1
Sherlock, G.2
Zhang, M.Q.3
Iyer, V.R.4
Anders, K.5
Eisen, M.B.6
Brown, P.O.7
Botstein, D.8
Futcher, B.9
-
42
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
Dec.
-
M.B. Eisen, P.T. Spellman, P.O. Brown, and D. Botstein, "Cluster Analysis and Display of Genome-Wide Expression Patterns," in Proceedings of the National Academy of Science USA, Dec. 1998, vol. 95, pp. 14863-14868.
-
(1998)
Proceedings of the National Academy of Science USA
, vol.95
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
|