Comparison between classical and Bayesian methods to investigate the history of olive cultivars using SSR-polymorphisms

Plant Science

Volumn 175, Issue 4, 2008, Pages 524-532

  Breton, Catherine ^a,b,c   Pinatel, Christian ^b   Médail, Frédéric ^c   Bonhomme, François ^a   Bervillé, André ^d  

^a UNIV MONTPELLIER   (France)

^b AFIDOL   (France)

^c CNRS   (France)

^d CEMAGREF   (France)

Author keywords

Assignation (Bayesian) method; Domestication; Genetic relationships; Microsatellites; Olea europaea; Olive cultivars

Indexed keywords

ELAEAGNUS ANGUSTIFOLIA; OLEA EUROPAEA;

EID: 49349098660     PISSN: 01689452     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.plantsci.2008.05.025     Document Type: Article

References (47)

1. Green P.S. A revision of Olea L. (Oleaceae). Kew Bull. 57 (2002) 91-140
2. Khadari B., Breton C., Moutier N., Roger J.P., Besnard G., Bervillé A., and Dosba F. Using molecular markers for olive germplasm management in one collection. Theor. Appl. Genet. 106 (2003) 521-529
3. Besnard G., Breton C., Baradat P., Khadari B., and Bervillé A. Cultivar identification in the olive (Olea europaea L.) based on RAPDS. J. Am. Hort. Sci. 126 (2001) 668-675
4. H. Hannachi, C. Breton, M. Msallem, S. Ben El Hadj, M. El Gazzah, A. Bervillé, Differences between native and introduced olive cultivars as revealed by morphology of drupes, oil composition and SSR polymorphisms: a case study in Tunisia, Sci. Horticult. doi:10.1016/jscientia.2008.01.004.
5. Breton C., Besnard G., and Bervillé A. Using multiple types of molecular markers to understand olive phylogeography. In: Zeder M.A., Decker-Walters D., Bradley D., and Smith B. (Eds). Documenting Domestication: New Genetic and Archaeological Paradigms (2006), Smithsonian Press, Washington DC 141-148
6. Besnard G., Baradat P., Breton C., Khadari B., and Bervillé A. Olive domestication from structure of oleasters and cultivars using RAPDs and mitochondrial RFLP. Genet., Select., Evolut. 33 Suppl. 1 (2001) S251-S268
7. Lumaret R., and Ouazzani N. Ancient wild olives in Mediterranean forests. Nature 413 (2001) 700
8. Lumaret R., Ouazzani N., Michaud H., Vivier G., Deguilloux M.F., and Di Giusto F. Allozyme variation of Oleaster populations (wild olive tree) (Olea europaea L.) in the Mediterranean Basin. Heredity 92 (2004) 343-351
9. Lumaret R., Ouazzani N., Michaud H., and Villemur P. Cultivated olive and oleaster: two very closely connected partners of the same species (Olea europaea). Evidence from enzyme polymorphism. Bocconea 7 (1997) 39-42
10. Zohary D., and Spiegel-Roy P. Beginnings of fruit growing in the old world. Science 187 (1975) 319-327
11. Chevalier A. L'origine de l'Olivier Cultivé et ses Variations. Rev. Int. de. Bot. Appl. Agric. Tropicale. 28 (1948) 1-25
12. Turrill W.B. Wild and cultivated olives. Kew Bull. 3 (1951) 437-442
13. Loukas M., and Krimbas C.B. History of Olive cultivars based on their genetic distances. J. Hort. Sci. 58 (1983) 121-127
14. Rotondi A., Magli M., Ricciolini C., and Baldoni L. Morphological and molecular analyses for the characterization of a group of Italian olive cultivars. Euphytica 132 (2003) 129-137
15. Terral J.-F., Alonso N., Capdevila R.B.I., Chatti N., Fabre L., Fiorentino G., Marinval P., Perez Jorda G., Pradat B., Rovira N., and Alibert P. Historical biogeography of olive domestication (Olea europaea L.) as revealed by geometrical morphometry applied to biological and archaeological material. J. Biogeo. 31 (2004) 63-77
16. Grati-Kamoun N., Lamy F.L., Rabaï A., Gargouri A., Panaud O., and Sarr A. Genetic diversity of Tunisian olive tree (Olea europaea L.) cultivars assessed by AFLP markers. Genet. Res. Crop Evol. 53 (2006) 265-275
17. Belaj A., Satovic Z., Rallo L., and Trujillo I. Genetic diversity and relationships in olive (Olea europaea L.) germplasm collections as determined by randomly amplified polymorphic DNA. Theor. Appl. Genet. 105 (2002) 638-644
18. Bronzini de Caraffa V., Maury J., Gambotti C., Breton C., Bervillé A., and Giannettini J. Mitochondrial DNA variation and RAPD mark oleasters, olive and feral olive from Western and Eastern Mediterranean. Theor. Appl. Genet. 104 (2002) 1209-1216
19. Owen C.A., Bita E.C., Banilas G., Hajjar1 S.E., Sellianakis V., Aksoy U., Hepaksoy S., Chamoun R., Talhook S., Metzidakis I., Hatzopoulos P., and Kalaitzis P. AFLP reveals structural details of genetic diversity within cultivated olive germplasm from the Eastern Mediterranean. Theor. Appl. Genet. 110 (2005) 1169-1176
20. Claros M.G., Crespillo R., Aguilar M.L., and Canovas F.M. DNA fingerprinting and classification of geographically related genotypes of olive tree (Olea europaea L.). Euphytica 116 (2000) 131-142
21. Contento A., Ceccarelli M., Gelati M.T., Maggini F., Baldoni L., and Cionini P.G. Diversity of Olea genotypes and the origin of cultivated olives. Theor. Appl. Genet. 104 (2002) 1229-1238
22. Pritchard J.K., Stephens M., and Donnelly P. Inference of population structure using multilocus genotype data. Genetics 155 (2000) 945-959
23. Breton C., Tersac M., and Bervillé A. SSR genetic diversity in wild olive (oleaster, Olea europaea L.) suggests several Plio-Pleistocene refuge zones in the Mediterranean basin and gene flow with olive. J. Biogeogr. 33 (2006) 1916-1928
24. J.F. Terral, La domestication de l'olivier Olea europaea L en Méditerrannée nord occidentale Approche morphométrique et implications paléoclimatiques Thesis University Montpellier II, 1997, p. 136.
25. Terral J.F., and Arnold-Simard G. Beginnings of olive cultivation in eastern spain in relation to holocene bioclimatic changes. Quaternary Res. 46 (1996) 176-185
26. Besnard G., Khadari B., Villemur P., and Bervillé A. A cytoplasmic male sterility in olive cultivars (Olea europaea L.): phenotypic, genetic and molecular approaches. Theor. Appl. Genet. 100 (2000) 1018-1024
27. Sefc K.M., Lopes M.S., Mendoça D., Rodrigues Dos Santos M., Laimer L.M., Câmara Machado D., and Da Camara Mâchado A. Identification of microsatellites loci in Olive (Olea europaea) and their characterization in Italian and Iberian trees. Mol. Ecol. 9 (2000) 1171-1193
28. Evanno G., Regnaut S., and Goudet J. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. 148 (2005) 2611-2620
29. Besnard G., and Bervillé A. On chloroplast DNA variations in the olive (Olea europea L.) complex: comparison of RFLP and PCR polymorphisms. Theor. Appl. Genet. 104 (2002) 1157-1163
30. Sokal R.R., and Michener C.M. A statistical method for evaluating systematic relationships. Univ. Kansas Sci. Bull. 28 (1958) 1409-1438
31. Ward Jr. J.H. Hierarchical grouping to optimize an objective function. J. Am. Statist. Assoc. 58 (1963) 236-244
32. K. Belkhir, V. Castric, F. Bonhomme, Genetix Laboratoire Génome et Populations, CNRS UPR 9060, Université de Montpellier II, 2000, Montpellier (France), www.univ-montp2.fr/∼genetix/identix_ms.pdf.
33. Fabbri A., Hormaza J.I., and Polito V.S. Random amplified polymorphic DNA analysis of olive (Olea europaea L.) cultivars. J. Am. Soc. Hort. Sci. 120 (1995) 538-542
34. Pasqualone A., Caponio F., and Blanco A. Inter-simple sequence repeat DNA markers for identification of drupes from different Olea europaea L. cultivars. Eur. Food Res. Technol. 213 (2001) 240-243
35. Belaj A., Satovic Z., Cipriani G., Baldoni L., Testolin R., Rallo L., and Trujillo I. Comparative study of the discriminating capacity of RAPD, AFLP, and SSR markers and their effectiveness in establishing genetic relationships in olive. Theor. Appl. Genet. 107 (2003) 736-744
36. Hatzopoulos P., Banilas G., Gianoulia K., Gazis F., Nikoloudakis N., Milioni D., and Haralampidis K. Breeding, molecular markers ad molecular biology of the olive tree. Eur. J. Lipid Sci. Technol. 104 (2002) 574-586
37. Besnard G., Khadari B., Baradat P., and Bervillé A. Olea europaea (Oleaceae) phylogeography based on chloroplast DNA polymorphism. Theor. Appl. Genet. 104 (2002) 1353-1361
38. Matsuoka Y., Vigouroux Y., Goodman M.M., Sanchez J.G., Buckler E., and Doebley J. A single domestication for maize shown by multilocus microsatellite genotyping. Proc. Natl. Am. Sci. 99 (2003) 6080-6084
39. Viard F., Arnaud J.-F., Delescluse M., and Cuguen J. Tracing back seed and pollen flow within the crop-wild Beta vulgaris complex: genetic distinctiveness vs. hot spots of hybridization over a regional scale. Mol. Ecol. 13 (2004) 1357-1364
40. Heuertz M., Hausman J.F., Hardy O.J., Vendramin G.G., Frascaria-Lacoste N., and Vekemans X. Nuclear microsatellites reveal contrasting patterns of genetic structure between western and southeastern European populations of the common ash (Fraxinus excelsior L.). Evolution 58 (2004) 976-988
41. Pierpaoli M., Birò Z.S., Herrmann M., Hupe K., Fernandes M., Ragni B., Szemethy L., and Randi E. Genetic distinction of wildcat (Felis silvestris) populations in Europe, and hybridization with domestic cats in Hungary. Mol. Ecol. 12 (2003) 2586-2598
42. Angiolillo A., Mencuccini M., and Baldoni L. Olive genetic diversity assessed using amplified fragment length polymorphisms. Theor. Appl. Genet. 98 (1999) 411-421
43. Figuieral I., and Terral J.-F. Late quaternary refugia of Mediterranean taxa in the Portuguese Estremadura: charcoal based paleovegetation and climatic reconstruction. Quat. Sci. Rev. 21 (2001) 549-558
44. Magdeleine J., and Ottaviani J.C. Découverte de vanneries dates du néolithique moyen dans un abri de Saint-Florent en Corse. Bull. Soc. Préhis. Fr. 80 (1993) 24-32
45. F. Lanfranchi, Bui Thi Mai, Oléastre et lentisque, plantes oléagineues utilisées en Corse au néolithique, 1995, Harvard.
46. F. Lanfranchi, Bui Thi Mai, () Oléastre et lentisque de Corse et de Sardaigne: deux plantes oléagineuses sauvages dans l'économie Néolithique. In Olio Sacro e profano, tradizione olearie in Sardinia e Corsica, M. Atzori and A. Vodret, Editrice Democratica Sarda, 1995, Sassari It.
47. Besnard G., and Bervillé A. Multiple origins of the Mediterranean olive (Olea europaea L. ssp. europaea) based upon mitochondrial DNA polymorphisms. CR Acad. Sci. Life Sci. 323 (2000) 173-181