A web-based interactive monitoring system for molecular simulation

Proceedings of the Frontiers in the Convergence of Bioscience and Information Technologies, FBIT 2007

Volumn , Issue , 2007, Pages 327-332

  Lee, Jun ^a   Hwang, Taedoo ^a   Lee, Jonghyun ^a   Park, Sungjun ^b   Choi, Youngjin ^a   Jeong, Karpjoo ^a   Kim, Jee In ^a  

^a Konkuk University   (South Korea)

^b Hoseo University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

CHLORINE COMPOUNDS; DYNAMICS; EXPERIMENTS; GRID COMPUTING; INFORMATION TECHNOLOGY; MOLECULAR DYNAMICS; MOLECULAR STRUCTURE; QUANTUM CHEMISTRY; SUPERCOMPUTERS; TECHNOLOGY; WEB BROWSERS;

3-D ANIMATION; COMPUTING CAPACITY; COMPUTING POWERS; GRID SYSTEMS; LARGE-SCALE CLUSTERS; MOLECULAR SIMULATIONS; MONITORING SYSTEMS; SIMULATION RESULTS;

COMPUTER SYSTEMS;

EID: 49349089176     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/FBIT.2007.117     Document Type: Conference Paper

References (11)

1. B.R.Brooks, R.E.Bruccoleri, B.F.Olafson, D. Vid J. States, S.Swaminathan, and M.Karplus, CHARM M: A Program for macromolecular energy, miniza tion, and dynamics calculation, .T.Comp.Chem, vol4, pp 187-217, 1983
2. Assignment of vibrational spectra of labdatriene derivatives and ambers: A combined experimenta 1 and density functional theoretical study Manuel VillanuevaGarcia, Antonio Martinez-Richa, and Juvencio Robles Arkivoc (E.T-1567C) pp 449-458 Online Article
3. Kale, L.V., Bhandarkar, M., Brunner, R., Krawetz, N., Phillips, J. and Shinozaki,A., "NAMD: A Case Study in Multilingual Parallel Programming," the 10th International Workshop on Languages and Compilers for Parallel Computing, pp 367-381.
4. Karpjoo Jeong, Jonghyun Lee, Dongkwang Kim, Suntae Hwang, Daeyoung Heo, Seunho Jung, Youngin Choi, Kum Won Cho, "M Grid: A Collaborative and Integrated Molecular Simulation Grid System for Computing and Data Management", Grid computing environment, 2006.
5. F.M Richards, "Areas, volumes, packing and protein structures", in Annual Review of Biophysics and Bioengineering, 6, pp. 151-176, 1977
6. William Humphrey, Andrew Dalke and Klasus Schulten, "VMD - Visual Molecular Dynamics", Journal of Molecular Grahpics, 14, pp.33-38, 1996. http://www.ks.uiuc.edu/ Research/vmd/
7. Altschul, S.F., Gish, W., Miller, W., Myers, E.W. and Lipman, D.T., "Basic local alignment search tool", Journal of Molecular Biology, 215, pp403-410, 1990., http://jmol.sourceforge.net
8. RASMOL, http://www.umass.edu/rasmol/
9. Gans J, Shalloway D, Qmol:A program for molecular visualization on Windows based PCs, Journal of Molecular Graphics and Modelling, pp 557-559, 2001.
10. Protein Explorer, http://www.umass.edu/micobio/ch ime/index.html
11. Insight II, http://www.Accelrys.com