Cloning, expression and purification of cytochrome c6 from the brown alga Hizikia fusiformis and complete X-ray diffraction analysis of the structure

Acta Crystallographica Section F: Structural Biology and Crystallization Communications

Volumn 64, Issue 8, 2008, Pages 674-680

  Akazaki, Hideharu ^a   Kawai, Fumihiro ^b   Chida, Hirotaka ^a   Matsumoto, Yuichirou ^a   Hirayama, Mao ^a   Hoshikawa, Ken ^a   Unzai, Satoru ^b   Hakamata, Wataru ^a   Nishio, Toshiyuki ^a   Park, Sam Yong ^a   Oku, Tadatake ^a  

^a NIHON UNIVERSITY   (Japan)

^b YOKOHAMA CITY UNIVERSITY   (Japan)

Author keywords

Brown algae; cDNA cloning; Cytochrome c6

Indexed keywords

CYTOCHROME C6; PRIMER DNA;

ARTICLE; BROWN ALGA; CHEMISTRY; ENZYMOLOGY; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR CLONING; NUCLEOTIDE SEQUENCE; PROTEIN CONFORMATION; X RAY CRYSTALLOGRAPHY;

ALGAE, BROWN; BASE SEQUENCE; CLONING, MOLECULAR; CRYSTALLOGRAPHY, X-RAY; CYTOCHROMES C6; DNA PRIMERS; PROTEIN CONFORMATION;

ALGAE; EUKARYOTA; HIZIKIA FUSIFORMIS; PHAEOPHYCEAE;

EID: 49249139382     PISSN: 17443091     EISSN: 17443091     Source Type: Journal    
DOI: 10.1107/S1744309108017752     Document Type: Article

References (36)

1. Aitken, A. (1976). Nature (London), 263, 793-796.
2. Bonham-Smith, P. C. & Bourque, D. P. (1989). Nucleic Acids Res. 17, 2057-2080.
3. Campos, A. P., Aguiar, A. P., Hervás, M., Regalla, M., Navarro, J. A., Ortega, J. M., Xavier, A. V., De La Rosa, M. A. & Teixeira, M. (1993). Eur. J. Biochem. 216, 329-341.
4. Cavalier-Smith, T. (2000). Trends Plant Sci. 5, 174-182.
5. Collaborative Computational Project, Number 4 (1994). Acta Cryst. D50, 760-763.
6. Darnell, J. E., Philipson, L., Wall, R. & Adesnic, M. (1971). Science, 174, 507-510.
7. Dikiy, A., Carpentier, W., Vandenberghe, I., Borsari, M., Safarov, N., Dikaya, E., Van Beeumen, J. & Ciurli, S. (2002). Biochemistry, 41, 14689-14699.
8. Drager, R. G., Zeidler, M., Simpson, C. L. & Stern, D. B. (1996). RNA, 2, 652-663.
9. Emsley, P. & Cowtan, K. (2004). Acta Cryst. D60, 2126-2132.
10. Frazão, C., Soares, C. M., Carrondo, M. A., Pohl, E., Dauter, Z., Wilson, K. S., Hervás, M., Navarro, J. A., De La Rosa, M. A. & Sheldrick, G. M. (1995). Structure, 3, 1159-1169.
11. Hill, K. L., Li, H. H., Singer, J. S. & Merchant, S. (1991). J. Biol. Chem. 266, 15060-15067.
12. Holm, L. & Park, J. (2000). Bioinformatics, 16, 566-567.
13. Kabsch, W. & Sander, C. (1983). Biopolymers, 22, 2577-2637.
14. Kerfeld, C. A., Anwar, H. P., Interrante, R., Merchant, S. & Yeates, T. O. (1995). J. Mol. Biol. 250, 627-647.
15. Kerfeld, C. A. & Krogmann, D. W. (1998). Annu. Rev. Plant Physiol. Plant Mol. Biol. 49, 397-425.
16. Laycock, M. V. (1975). Biochem. J. 149, 271-279.
17. McFadden, G. I. (1999). J. Eukaryot. Microbiol. 46, 339-346.
18. Merchant, S. & Bogorad, L. (1987). J. Biol. Chem. 262, 9062-9067.
19. O'Hara, E. B., Chekanova, J. A., Ingle, C. A., Kushner, Z. R., Peters, E. & Kushner, S. R. (1995). Proc. Natl Acad. Sci. USA, 92, 1807-1811.
20. Otwinowski, Z. & Minor, W. (1997). Methods Enzymol. 276, 307-326.
21. Reith, M. & Munholland, J. (1993). Plant Cell, 5, 465-475.
22. Satoh, T., Itoga, A., Isogai, Y., Kurihara, M., Yamada, S., Natori, M., Suzuki, N., Suruga, K., Kawachi, R., Arahira, M., Nishio, T., Fukazawa, C. & Oku, T. (2002). FEBS Lett. 531, 543-547.
23. Sagher, D., Grosfeld, H. & Edelman, M. (1976). Proc. Natl Acad. Sci. USA, 73, 722-726.
24. Sawaya, M. R., Krogmann, D. W., Serag, A., Ho, K. K., Yeates, T. O. & Kerfeld, C. A. (2001). Biochemistry, 40, 9215-9225.
25. Schägger, H. & von Jagow, G. (1987). Anal. Biochem. 166, 368-379.
26. Schnackenberg, J., Than, M. E., Mann, K., Wiegand, G., Huber, R. & Reuter, W. (1999). J. Mol. Biol. 290, 1019-1030.
27. Shinozaki, K. et al. (1986). EMBO J. 5, 2043-2049.
28. Steiner, J. M., Serrano, A., Allmaier, G., Jakowitsch, J. & Löffelhardt, W. (2000). Eur. J. Biochem. 267, 4232-4241.
29. Sugimura, Y., Hase, T., Matsubara, H. & Shimokoriyama, M. (1981). J. Biochem. (Tokyo), 90, 1213-1219.
30. The Arabidopsis Initiative (2000). Nature (London), 408, 796-815.
31. Travaglini-Allocatelli, C., Gianni, S., Dubey, V. K., Borgia, A., Di Matteo, A., Bonivento, D., Cutruzzolà, F., Bren, K. L. & Brunori, M. (2005). J. Biol. Chem. 280, 25729-25734.
32. Ullmann, G. M., Hauswald, M., Jensen, A., Kostic, N. M. & Knapp, E. W. (1997). Biochemistry, 36, 16187-16196.
33. Vacula, R., Steiner, J. M., Krajcovic, J., Ebringer, L. & Löffelhardt, W. (1999). DNA Res. 6, 45-49.
34. Worrall, J. A., Schlarb-Ridley, B. G., Reda, T., Marcaida, M. J., Moorlen, R. J., Wastl, J., Hirst, J., Bendall, D. S., Luisi, B. F. & Howe, C. J. (2007). J. Am. Chem. Soc. 129, 9468-9475.
35. Yamada, S., Park, S.-Y., Shimizu, H., Koshizuka, Y., Kadokura, K., Satoh, T., Suruga, K., Ogawa, M., Isogai, Y., Nishio, T., Shiro, Y. & Oku, T. (2000). Acta Cryst. D56, 1577-1582.
36. Yang, J. & David, B. S. (1997). J. Biol. Chem. 272, 12874-12880.