Structural basis for the molecular properties of cytochrome c6

Biochemistry

Volumn 41, Issue 50, 2002, Pages 14689-14699

  Dikiy, Alexander ^a   Carpentier, Wesley ^b   Vandenberghe, Isabel ^b   Borsari, Marco ^c   Safarov, Niyaz ^a   Dikaya, Elena ^a   Van Beeumen, Jozef ^b   Ciurli, Stefano ^a  

^a UNIVERSITY OF BOLOGNA   (Italy)

^b GHENT UNIVERSITY   (Belgium)

^c UNIVERSITY OF MODENA AND REGGIO EMILIA   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

ALGAE; AMINO ACIDS; CYCLIC VOLTAMMETRY; DIMERIZATION; ELECTROCHEMISTRY; ENTHALPY; ENTROPY; HYDROPHOBICITY; MASS SPECTROMETRY; NUCLEAR MAGNETIC RESONANCE; OXIDATION; PROTEINS; THERMODYNAMICS; ULTRAVIOLET RADIATION;

CYTOCHROMES;

BIOCHEMISTRY;

CYTOCHROME C; CYTOCHROME C6; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; CHEMICAL REACTION KINETICS; CLADOPHORA GLOMERATA; DIMERIZATION; ELECTRICITY; ELECTROCHEMISTRY; ELECTRON TRANSPORT; ENTHALPY; ENTROPY; GREEN ALGA; HYDROPHOBICITY; MASS SPECTROMETRY; POTENTIOMETRY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE; PROTEIN TERTIARY STRUCTURE; STRUCTURE ANALYSIS; THERMODYNAMICS; X RAY ANALYSIS;

ALGAE, GREEN; AMINO ACID SEQUENCE; APOENZYMES; CRYSTALLIZATION; CRYSTALLOGRAPHY, X-RAY; CYTOCHROMES; CYTOCHROMES F; ELECTROCHEMISTRY; HEME; HYDROGEN-ION CONCENTRATION; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; OXIDATION-REDUCTION; SEQUENCE ALIGNMENT; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION; SPECTROPHOTOMETRY, ULTRAVIOLET; THERMODYNAMICS;

ALGAE; CHLOROPHYTA; CLADOPHORA; CLADOPHORA GLOMERATA;

EID: 2242473922     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi026473v     Document Type: Article

References (81)

1. Reuter, W., and Wiegand, G. (2001) in Handbook of Metalloproteins (Messerschmidt, A., Huber, R., Wieghardt, K., and Poulos, T., Eds.) pp 87-99, Wiley, New York.
2. Kallas, T. (1994) in Molecular Biology of Cyanobacteria (Bryant, D. A., Ed.) pp 259-317, Kluwer Academic Publishers, Dordrecht, The Netherlands.
3. Golbeck, J. H. (1994) in The Molecular Biology of Cyanobacteria (Bryant, D. A., Ed.) pp 319-360, Kluwer Academic Publishers, Dordrecht, The Netherlands.
4. Wood, P. M. (1978) Eur. J. Biochem. 87, 9-19.
5. Sandmann, G., Reck, H., Kessler, E., and Boger, P. (1983) Arch. Microbiol. 134, 23-27.
6. Ho, K. K., and Krogmann, D. W. (1984) Biochim. Biophys. Acta 766, 310-316.
7. Bryant, D. A. (1994) The Molecular Biology of Cyanobacteria, Kluwer, Dordrecht, The Netherlands.
8. Hill, K. L., and Merchant, S. (1995) EMBO J. 14, 857-865.
9. Sawaya, M. R., Krogmann, D. W. Serag, A., Ho, K. K., Yeales, T. O., and Kerfeld, C. A. (2001) Biochemistry 40, 9215-9225.
10. Beissinger, M., Sticht, H., Sutler, M., Ejchart, A., Haehnel, W., and Rosch, P. (1998) EMBO J. 17, 27-36.
11. Yamada, S., Park, S.-Y., Shimizu, H., Koshizuka, Y., Kadokura, K., Satoh, T., Suruga, K., Ogawa, M., Isogai, Y., Nisho, T., Shiro, Y., and Oku, T. (2000) Acta Crystallogr. D56, 1577-1582.
12. Schneckenberg, J., Than, M. E., Mann, K., Wiegand, G., Huber, R., and Reuter, W. (1999) J. Mol. Biol. 290, 1019-1030.
13. Frazao, C., Soares, C. M., Carrondo, M. A., Pohl, E., Dauter, Z., Wilson, K. S., Hervas, M., Navarro, J. A., De la Rosa, M. A., and Sheldrick, G. (1995) Structure 3, 1159-1169.
14. Banci, L., Bertini, I., Quacquarini, G., Walter, O., Diaz, A., Hervas, M., and De la Rosa, M. A. (1996) J. Biol. Inorg. Chem. 1, 330-340.
15. Banci, L., Bertini, I., De la Rosa, M. A., Koulougliotis, D., Navarro, J. A., and Walter, O. (1998) Biochemistry 37, 4831-4843.
16. Kerfeld, C. A., Anwar, H. P., Interrante, R., Merchant, S., and Yeates, T. O. (1995) J. Mol. Biol. 250, 627-647.
17. Safarov, N., Agalarov, R. I., Isaev, M. N., Dikiy, A., and Gasanov, R. A. (1998) in Progress in Botanical Research (Tsekos, I., and Moustakas, M., Eds.) pp 235-238, Kluwer Academic Publishers, Dordrecht, The Netherlands.
18. Laemmli, U. K. (1970) Nature 227, 680-685.
19. Thomas, P. E., Ryan, D., and Levin, W. (1976) Anal. Biochem. 75, 168-176.
20. Andrews, P. (1964) Biochem. J. 91, 222-233.
21. Smith, P. K., Krohn, R. I., Hermanson, G. T., Mallia, A. K., Garther, F. H., Provenzano, M. D., Fujimoto, E. K., Goeke, N. M., Olson, B. J., and Klenk, D. C. (1985) Anal. Biochem. 150, 76-85.
22. Jue, R. A., and Hale, E. J. (1994) in Techniques in Protein Chemistry (Crabb, J. W., Ed.) pp 179-188. Academic Press, San Diego.
23. Banci, L., Bertini, I., Luchinat, C., Piccioli, M., Scozzafava, A., and Turano, P. (1989) Inorg. Chem. 28, 4650-4656.
24. Dugad, L. B., La Mar, G. N., Banci, L., and Bertini, I. (1990) Biochemistry 29, 2263-2271.
25. Braunschweiler, L., and Ernst, R. R. (1983) J. Magn. Reson. 53, 521-528.
26. Macura, S., and Ernst, R. R. (1980) Mol. Phys. 41, 95.
27. Wider, G., Macura, S., Kumar, A., Ernst, R. R., and Wuthrich, K. (1984) J. Magn. Reson. 56, 207-234.
28. Davis, D. G., and Bax, A. (1985) J. Am. Chem. Soc. 107, 2820-2821.
29. Griesinger, C., Otting, G., Wuthrich, K., and Ernst, R. R. (1988) J. Am. Chem. Soc. 110, 7870-7872.
30. Bertini, I., Ciurli, S., Dikiy, A., and Luchinat, C. (1993) J. Am. Chem. Soc. 115, 12020-12028.
31. Marion, D., and Wuthrich, K. (1983) Biochem. Biophys. Res. Commun. 113, 967-974.
32. Marion, D., Driscoll, P. C., Kay, L. E., Wingfield, P. I., Bax, A., Gronenborn, A. M., and Clore, G. M. (1989) Biochemistry 28, 6150-6156.
33. Yee, E. L., Cave, R. J., Guyer, K. L., Tyma, P. D., and Weaver, M. J. (1979) J. Am. Chem. Soc. 101, 1131-1137.
34. Yee, E. L., and Weaver, M. J. (1980) Inorg. Chem. 19, 1077-1087.
35. Nicholson, R. S. (1965) Anal. Chem. 37, 1351-1355.
36. Otwinowski, Z. (1993) in Proceedings of the CCP4 Study Weekend (Sawyer, L., Isaac, N., and Bailey, S., Eds.) pp 56-62, Daresbury Laboratory, Warrington, U.K.
37. Otwinowski, Z., and Minor, W. (1997) Methods Enzymol. 276, 307-325.
38. Collaborative Computational Project, No. 4 (1994) Acta Crystallogr. D50, 760-763.
39. Navaza, J. (1994) Acta Crystallogr. A50, 157-163.
40. Lamzin, V. S., and Wilson, K. S. (1997) Methods Enzymol. 277, 269-305.
41. Perrakis, A., Morris, R., and Lamzin, V. S. (1999) Nat. Struct. Biol. 6, 458-463.
42. Murshudov, G. N., Vagin, A. A., and Dodson, E. J. (1997) Acta Crystallogr. D53, 240-255.
43. Murshudov, G. N., Vagin, A. A., Lebedev, A., Wilson, K. S., and Dodson, E. J. (1999) Acta Crystallogr. D55, 247-255.
44. Laskowski, R. A., MacArthur, M. W., Moss, D. S., and Thornton, J. M. (1993) J. Appl. Crystallogr. 26, 283-291.
45. Banci, L., Bertini, I., Luchinat, C., Pierattelli, R., Shokhirev, N. V., and Walker, F. A. (1998) J. Am. Chem. Soc. 120, 8472-8479.
46. Bard, A. J., and Faulkner, L. R. (1980) Electrochemical Methods. Fundamentals and Applications, Wiley, New York.
47. Taniguchi, V. T., Sailasuta-Scott, N., Anson, F. C., and Gray, H. B. (1980) Pure Appl. Chem. 52, 2275-2281.
48. Dutton, P. L. (1978) Methods Enzymol. 54, 411-435.
49. Campos, A. P., Aguiar, A. P., Hervas, M., Regalla, M., Navarro, J. A., Ortega, J. M., Xavier, A. V., De la Rosa, M. A., and Teixeira, M. (1993) Eur. J. Biochem. 216, 329-341.
50. Taniguchi, I., Funatsu, T., Iseki, M., Yamaguchi, H., and Yasukouchi, K. (1985) J. Electroanal. Chem. 193, 295-302.
51. Bertrand, P., Mbarki, O., Asso, M., Blanchard, L., Guerlesquen, F., and Tegoni, M. (1995) Biochemistry 34, 11071-11079.
52. Battistuzzi, G., Borsari, M., Sola, M., and Francia, F. (1997) Biochemistry 36, 16247-16258.
53. Feinberg, B. A., Petro, L., Hock, G., Qin, W., and Margoliash, E. (1998) J. Pharm. Biomed. Anal. 19, 115-125.
54. Battistuzzi, G., Borsari, M., Cowan, J. A., Eicken, C., Loschi, L., and Sola, M. (1999) Biochemistry 38, 5553-5562.
55. Battistuzzi, G., Borsari, M., and Sola, M. (2001) Eur. J. Inorg. Chem., 2989-3004.
56. Cohen, D. S., and Pielak, G. J. (1995) J. Am. Chem. Soc. 117, 1675-1677.
57. Benini, S., Borsari, M., Ciurli, S., Dikiy, A., and Lamborghini, M. (1998) J. Biol. Inorg. Chem. 3, 371-382.
58. Benini, S., González., A., Rypniewski, W. R., Wilson, K. S., Van Beeumen, J. J., and Ciurli, S. (2000) Biochemistry 39, 13115-13126.
59. Scott, R. A., and Mauk, A. G. (1996) Cytochrome c. A Multidisciplinary Approach, University Science Books, Sausalito, CA.
60. Banci, L., Bertini, I., Huber, J. G., Spyroulias, G. A., and Turano, P. (1999) J. Biol. Inorg. Chem. 4, 21-31.
61. Koller, K. B., and Hawkridge, F. M. (1985) J. Am. Chem. Soc. 107, 7412-7417.
62. Marcus, R. A., and Sutin, N. (1985) Biochim. Biophys. Acta 811, 265-322.
63. Moore, G. R., and Pettigrew, G. W. (1990) Cytochrome c: Evolutionary, Structural and Physicochemical Aspects, Springer-Verlag, Berlin.
64. Rosell, F. J., Ferrer, J. C., and Mauk, A. G. (1998) J. Am. Chem. Soc. 120, 11234-11245.
65. Bertini, I., Banci, L., Ciurli, S., Dikiy, A., Dittmer, J., Rosato, A., Sciara, G., and Thompsett, A. (2002) ChemBioChem 3, 299-310.
66. Luntz, T. L., Schejter, A., Garber, E. A. E., and Margoliash, E. (1989) Proc. Natl Acad. Sci. U.S.A. 86, 3424-3528.
67. Bushnell, G. W., Louie, G. V., and Brayer, G. D. (1990) J. Mol. Biol. 214, 585-595.
68. Berghuis, A. M., Guillemette, J. G., McLendon, G., Sherman, F., Smith, M., and Brayer, G. D. (1994) J. Mol. Biol. 236, 786-799.
69. Berghuis, A. M., Guillemette, J. G., Smith, M., and Brayer, G. D. (1994) J. Mol. Biol. 235, 1326-1341.
70. Lett, C. M., Berghuis, A. M., Frey, H. E., Lepock, E. F., and Guillemette, J. G. (1996) J. Biol. Chem. 271, 29088-29093.
71. Than, M. E., Hof, P., Huber, R., Bourenkov, G. P., Bartunik, H. D., Buse, G., and Soulimane, T. (1997) J. Mol. Biol. 271, 629-644.
72. Hasegawa, J., Yoshida, T., Yamazaki, T., Sambongi, Y., Yu, Y., Igarashi, Y., Kodama, T., Yamazaki, K., Kyogoku, Y., and Kobayashi, Y. (1998) Biochemistry 37, 9641-9649.
73. Allen, J. P., Feher, G., Yeates, T. O., Komiya, H., and Rees, D. C. (1987) Proc. Natl. Acad. Sci. U.S.A. 84, 6162-6166.
74. Tiede, D. M., Vashishta, A.-C., and Gunner, M. R. (1993) Biochemistry 32, 4515-4531.
75. Meyer, T. E., Bartsch, R. G., Cusanovich, M. A., and Tollin, G. (1993) Biochemistry 32, 4719-4726.
76. Davidson, V. L., and Jones, L. H. (1995) Biochemistry 34, 1238-1243.
77. Blackledge, M. J., Guerlesquin, F., and Marion, D. (1996) Proteins: Struct., Funct., Genet. 24, 178-194.
78. Ciurli, S., Safarov, N., Miletti, S., Dikiy, A., Christensen, S. K., Kometzky, K., Bryant, D. A., Vandenberghe, I., Devreese, B., Samyn, B., Remaut, H., and Van Beeumen, J. J. (2002) J. Biol. Inorg. Chem. 7, 623-631.
79. Bertini, I., Ciurli, S., Dikiy, A., Fernandez, C., Luchinat, C., Safarov, N., Shumilin, S., and Vila, A. (2001) J. Am. Chem. Soc. 123, 2405-2413.
80. Hochkoeppler, A., Kofod, P., Ferro, G., and Ciurli, S. (1995) Arch. Biochem. Biophys. 322, 313-318.
81. Koradi, R., Billeter, M., and Wuthrich, K. (1996) J. Mol. Graphics 14, 51-55.