Ontology database: A new method for semantic modeling and an application to brainwave data

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Volumn 5069 LNCS, Issue , 2008, Pages 313-330

  LePendu, Paea ^a   Dou, Dejing ^a   Frishkoff, Gwen A ^b   Rong, Jiawei ^a  

^a UNIVERSITY OF OREGON   (United States)

^b UNIVERSITY OF PITTSBURGH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADMINISTRATIVE DATA PROCESSING; DATABASE SYSTEMS; INFORMATION THEORY; KNOWLEDGE BASED SYSTEMS; MANAGEMENT INFORMATION SYSTEMS; RELIABILITY; SEMANTIC WEB; SEMANTICS; STATISTICAL METHODS;

AUTOMATIC METHODS; CASE STUDIES; DATABASE MANAGEMENT; INTEGRITY CONSTRAINTS; INTERNATIONAL CONFERENCES; KNOWLEDGE-BASED; QUERY RESPONSE TIME; QUERY TIME; RELATIONAL DATABASES; RUN-TIME; SEMANTIC MODELING; SEMANTIC QUERIES; WEB ONTOLOGY;

ONTOLOGY;

EID: 49049083877     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-540-69497-7_21     Document Type: Conference Paper

References (34)

1. MGI: Mouse Genome Informatics, http://www.informatics.jax.org/
2. Open Biomedical Ontologies (OBO), http://www.geneontology.org/GO.format. obo-1_2.shtml
3. Resource Description Framework, http://www.w3.org/RDF/
4. SPARQL Query Language for RDF, http://www.w3.org/TR/rdf-sparql-query/
5. SWRL: A Semantic Web Rule Language Combining OWL and RuleML, http://www.w3.org/Submission/SWRL/
6. The National Center for Biomedical Ontology, http://www.bioontology.org/
7. Web Ontology Language (OWL), http://www.w3.org/TR/owl-ref/
8. ZFIN: The Zebrafish Information Network, http://www.zfin.org
9. Baader, F., Nutt, W.: Basic description logics. In: Description Logic Handbook, pp. 43-95 (2003)
10. Broekstra, J., Kampman, A., van Harmelen, F.: Sesame: A generic architecture for storing and querying rdf and rdf schema. In: International Semantic Web Conference, pp. 54-68 (2002)
11. Dien, J.: Addressing misallocation of variance in principal components analysis of event-related potentials. Brain Topography 11(1), 43-55 (1998)
12. Dou, D., Frishkoff, G., Rong, J., Frank, R., Malony, A., Tucker, D.: Development of NeuroElectroMagnetic Ontologies (NEMO): A Framework for Mining Brainwave Ontologies. In: Proceedings of the 13th ACM International Conference on Knowledge Discovery and Data Mining (KDD), pp. 270-279 (2007)
13. Dou, D., LePendu, P.: Ontology-based integration for relational databases. In: ACM Symposium on Applied Computing (SAC), pp. 461-466 (2006)
14. Fikes, R., Hayes, P.J., Horrocks, I.: Owl-ql - a language for deductive query answering on the semantic web. J. Web Sem. 2(1), 19-29 (2004)
15. Frishkoff, G.A.: Hemispheric differences in strong versus weak semantic priming: Evidence from event-related brain potentials. Brain Lang. 100(1) (2007)
16. Frishkoff, G.A., Frank, R.M., Rong, J., Dou, D., Dien, J., Halderman, L.K.: A Framework to Support Automated Classification and Labeling of Brain Electromagnetic Patterns. In: Computational Intelligence and Neuroscience (CIN), Special Issue, EEG/MEG Analysis and Signal Processing (2007)
17. Gardner, D., Knuth, K.H., Abato, M., Erde, S.M., White, T., DeBellis, R.: Common data model for neuroscience data and data model exchange. J. Am. Med. Inform. Assoc. 8(1), 17-33 (2001)
18. Guo, Y., Pan, Z., Heflin, J.: Lubm: A benchmark for owl knowledge base systems. J. Web Sem. 3(2-3), 158-182 (2005)
19. Hull, R., King, R.: Semantic database modeling: survey, applications, and research issues. ACM Comput. Surv. 19(3), 201-260 (1987)
20. Keator, D.B., Gadde, S., Grethe, J.S., Taylor, D.V., Potkin, S.G.: A general xml schema and spm toolbox for storage of neuro-imaging results and anatomical labels. Neuroinformatics 4(2), 199-212 (2006)
21. Koslow, S.H., Subramaniam, S. (eds.): Databasing the Brain: From Data to Knowledge (Neuroinformatics). Wiley-Liss, Chichester (2005)
22. Laird, A.R., Lancaster, J.L., Fox, P.T.: Brainmap: The social evolution of a human brain mapping database. Neuroinformatics 3(1), 65-78 (2005)
23. Lindberg, D., Humphries, B., McCray, A.: The Unified Medical Language System. Methods of Information in Medicine 32(4), 281-291 (1993)
24. Motik, B., Horrocks, I., Sattler, U.: Bridging the gap between owl and relational databases. In: Proceedings of the 16th International Conference on World Wide Web (WWW), pp. 807-816 (2007)
25. G.Ontology Consortium. Creating the Gene Ontology Resource: Design and Implementation. Genome Research 11(8), 1425-1433 (2001)
26. Pan, Z., Heflin, J.: Dldb: Extending relational databases to support semantic web queries. In: Workshop on Practical and Scalable Semantic Systems (2003)
27. Paton, N.W., Díaz, O.: Active database systems. ACM Comput. Surv. 31(1), 63-103 (1999)
28. Reiter, R.: Deductive question-answering on relational data bases. In: Logic and Data Bases, pp. 149-177 (1977)
29. Reiter, R.: On closed world data bases. In: Logic and Data Bases, pp. 55-76 (1977)
30. Reiter, R.: On structuring a first order data base. In: Proceedings of the Canadian Society for Computational Studies of Intelligence, pp. 90-99 (1978)
31. Reiter, R.: What should a database know? J. Log. Program. 14(1&2), 127-153 (1992)
32. Russell, S., Norvig, P.: Artificial Intelligence: A Modern Approach, 2nd edn. Prentice-Hall, Englewood Cliffs (2003)
33. Ullman, J.D.: Principles of Database and Knowledge-Base Systems, vol. I. Computer Science Press (1988)
34. Yu, A.C.: Methods in biomedical ontology. J. of Biomedical Informatics 39(3), 252-266 (2006)