Urinary proteome profiling to search for biomarkers in steroid-resistant nephrotic syndrome

Contributions to Nephrology

Volumn 160, Issue , 2008, Pages 29-36

  Traum, A ^a,c   Schachter, A ^b,c  

^a MASSACHUSETTS GENERAL HOSPITAL   (United States)

^b BOSTON CHILDREN S HOSPITAL   (United States)

^c HARVARD MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL MARKER; PROTEOME; STEROID;

DRUG RESISTANCE; HUMAN; NEPHROTIC SYNDROME; PHYSIOLOGY; PROTEOMICS; REVIEW; URINE;

BIOLOGICAL MARKERS; DRUG RESISTANCE; HUMANS; NEPHROTIC SYNDROME; PROTEOME; PROTEOMICS; STEROIDS;

EID: 48949090338     PISSN: 03025144     EISSN: None     Source Type: Book Series    
DOI: 10.1159/000125925     Document Type: Review

References (27)

1. Nephrotic syndrome in children: prediction of histopathology from clinical and laboratory characteristics at time of diagnosis. A report of the International Study of Kidney Disease in Children. Kidney Int 1978;13:159-165.
2. The primary nephrotic syndrome in children. Identification of patients with minimal change nephrotic syndrome from initial response to prednisone. A report of the International Study of Kidney Disease in Children. J Pediatr 1981;98:561-564.
3. NAPRTCS 2006 Annual Report, in North American Pediatric Renal Trials and Collaborative Studies, 2006.
4. Schachter AD: Computational simulation of renal biopsy accuracy in focal segmental glomerulosclerosis. Pediatr Nephrol 2006;21:953-957.
5. Spahr CS, Davis MT, McGinley MD, et al: Towards defining the urinary proteome using liquid chromatography-tandem mass spectrometry. I. Profiling an unfractionated tryptic digest. Proteomics 2001;1:93-107.
6. Davis MT, Spahr CS, McGinley MD, et al: Towards defining the urinary proteome using liquid chromatography-tandem mass spectrometry. II. Limitations of complex mixture analyses. Proteomics 2001;1:108-117.
7. Thongboonkerd V, McLeish KR, Arthur JM, et al: Proteomic analysis of normal human urinary proteins isolated by acetone precipitation or ultracentrifugation. Kidney Int 2002;62:1461-1469.
8. Oh J, Pyo JH, Jo EH, et al: Establishment of a near-standard two-dimensional human urine proteomic map. Proteomics 2004;4:3485-3497.
9. Pieper R, Gatlin CL, McGrath AM, et al: Characterization of the human urinary proteome: a method for high-resolution display of urinary proteins on two-dimensional electrophoresis gels with a yield of nearly 1400 distinct protein spots. Proteomics 2004;4:1159-1174.
10. Weissinger EM, Wittke S, Kaiser T, et al: Proteomic patterns established with capillary electrophoresis and mass spectrometry for diagnostic purposes. Kidney Int 2004;65:2426-2434.
11. Ransom RF, Lam NG, Hallett MA, et al: Glucocorticoids protect and enhance recovery of cultured murine podocytes via actin filament stabilization. Kidney Int 2005;68:2473-2483.
12. Ramjee G, Coovadia HM, Adhikari M: Comparison of noninvasive methods for distinguishing steroid-sensitive nephrotic syndrome from focal glomerulosclerosis. J Lab Clin Med 1997;129:47-52.
13. Khurana M, Traum AZ, Aivado M, et al: Urine proteomic profiling of pediatric nephrotic syndrome. Pediatr Nephrol 2006;21:1257-1265.
14. Woroniecki RP, Orlova TN, Mendelev N, et al: Urinary proteome of steroid-sensitive and steroidresistant idiopathic nephrotic syndrome of childhood. Am J Nephrol 2006;26:258-267.
15. Candiano G, Musante L, Bruschi M, et al: Repetitive fragmentation products of albumin and alpha1-antitrypsin in glomerular diseases associated with nephrotic syndrome. J Am Soc Nephrol 2006;17:3139-3148.
16. Erill S, du Souich P, Courteau H: Carbamylation of proteins and sulfacetamide free fraction in serum in experimentally-induced high blood urea states. Res Commun Chem Pathol Pharmacol 1985;50:45-56.
17. Lippincott J, Apostol I: Carbamylation of cysteine: a potential artifact in peptide mapping of hemoglobins in the presence of urea. Anal Biochem 1999;267:57-64.
18. Osterberg R, Orgel LE, Lohrmann R: Further studies of urea-catalyzed phosphorylation reactions. J Mol Evol 1973;2:231-234.
19. Strak GR, Link TP: Preparation and properties of three specific active derivatives of ribonuclease A obtained by methylation of methionine residues in 8M urea. Biochemistry 1975;14:4576-4581.
20. Filipe P, Haigle J, Freitas J, et al: Anti- and pro-oxidant effects of urate in copper-induced low-density lipoprotein oxidation. Eur J Biochem 2002;269:5474-5483.
21. Schlotte V, Sevanian A, Hochstein P, et al: Effect of uric acid and chemical analogues on oxidation of human low density lipoprotein in vitro. Free Radic Biol Med 1998;25:839-847.
22. Llansola M, Erceg S, Felipo V: Chronic exposure to ammonia alters the modulation of phosphorylation of microtubule-associated protein 2 by metabotropic glutamate receptors 1 and 5 in cerebellar neurons in culture. Neuroscience 2005;133:185-191.
23. Schliess F, Gorg B, Fischer R, et al: Ammonia induces MK-801-sensitive nitration and phosphorylation of protein tyrosine residues in rat astrocytes. Faseb J 2002;16:739-741.
24. Murthy CR, Hertz L: Acute effect of ammonia on branched-chain amino acid oxidation and incorporation into proteins in astrocytes and in neurons in primary cultures. J Neurochem 1987;49:735-741.
25. Murthy CR, Hertz L: Comparison between acute and chronic effects of ammonia on branched-chain amino acid oxidation and incorporation into protein in primary cultures of astrocytes and of neurons. J Neurosci Res 1987;17:271-276.
26. Reaich D, Channon SM, Scrimgeour CM, et al: Ammonium chloride-induced acidosis increases protein breakdown and amino acid oxidation in humans. Am J Physiol 1992;263:E735-E739.
27. Harper RG, Workman SR, Schuetzner S, et al: Low-molecular-weight human serum proteome using ultrafiltration, isoelectric focusing, and mass spectrometry. Electrophoresis 2004;25:1299-1306.