Extended phage locus typing of Salmonella enterica serovar Typhimurium, using multiplex PCR-based reverse line blot hybridization

Journal of Medical Microbiology

Volumn 57, Issue 7, 2008, Pages 827-838

  Wang, Qinning ^a   Kong, Fanrong ^a   Jelfs, Peter ^a   Gilbert, Gwendolyn L ^a  

^a Western Sydney Area Health Service   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIUM IDENTIFICATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SALMONELLA ENTERICA; VARIABLE NUMBER OF TANDEM REPEAT; BACTERIOPHAGE TYPING; CLASSIFICATION; DNA PROBE; EPIDEMIC; EVALUATION; FECES; FOOD POISONING; GENETICS; HUMAN; ISOLATION AND PURIFICATION; METHODOLOGY; MICROBIOLOGY; NUCLEIC ACID HYBRIDIZATION; PHYSIOLOGY; SALMONELLA PHAGE; SALMONELLA TYPHIMURIUM; VIROLOGY;

BACTERIAL TYPING TECHNIQUES; BACTERIOPHAGE TYPING; DISEASE OUTBREAKS; DNA PROBES; FECES; HUMANS; MINISATELLITE REPEATS; NUCLEIC ACID HYBRIDIZATION; POLYMERASE CHAIN REACTION; SALMONELLA FOOD POISONING; SALMONELLA PHAGES; SALMONELLA TYPHIMURIUM;

EID: 48949086641     PISSN: 00222615     EISSN: None     Source Type: Journal    
DOI: 10.1099/jmm.0.47766-0     Document Type: Article

References (23)

1. Anderson, E. S., Ward, L. R., Saxe, M. J. & de Sa, J. D. (1977). Bacteriophage-typing designations of Salmonella Typhimurium. J Hyg (Lond) 78, 297-300.
2. Cho, S., Boxrud, D. J., Bartkus, J. M., Whittam, T. S. & Saeed, M. (2007). Multiple-locus variable-number tandem repeat analysis of Salmonella enteritidis isolates from human and non-human sources using a single multiplex PCR. FEMS Microbiol Lett 275, 16-23.
3. Davos, D. (editor) (2006). Most Common Phage Types from Major Sources, p. 10. Annual Report, Australian Salmonella Reference Centre, Institute of Medical and Veterinary Science, Adelaide, Australia.
4. De Cesare, A., Manfreda, G., Dambaugh, T. R., Guerzoni, M. E. & Franchini, A. (2001). Automated ribotyping and random amplified polymorphic DNA analysis for molecular typing of Salmonella enteritidis and Salmonella Typhimurium strains isolated in Italy. J Appl Microbiol 91, 780-785.
5. Fakhr, M. K., Nolan, L. K. & Logue, C. M. (2005). Multilocus sequence typing lacks the discriminatory ability of pulsed-field gel electrophoresis for typing Salmonella enterica serovar Typhimurium. J Clin Microbiol 43, 2215-2219.
6. Guerra, B., Schrors, P. & Mendoza, M. C. (2000). Application of PFGE performed with XbaI to an epidemiological and phylogenetic study of Salmonella serotype Typhimurium. Relations between genetic types and phage types. New Microbiol 23, 11-20.
7. Hu, H., Lan, R. & Reeves, P. R. (2002). Fluorescent amplified fragment length polymorphism analysis of Salmonella enterica serovar Typhimurium reveals phage-type- specific markers and potential for microarray typing. J Clin Microbiol 40, 3406-3415.
8. Hunter, P. R. & Gaston, M. A. (1988). Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity. J Clin Microbiol 26, 2465-2466.
9. Jeoffreys, N. J., James, G. S., Chiew, R. & Gilbert, G. L. (2001). Practical evaluation of molecular subtyping and phage typing in outbreaks of infection due to Salmonella enterica serotype Typhimurium. Pathology 33, 66-72.
10. Kong, F. & Gilbert, G. L. (2006). Multiplex PCR-based reverse line blot hybridization assay (mPCR/RLB) - a practical epidemiological and diagnostic tool. Nat Protoc 1, 2668-2680.
11. Lan, R., Stevenson, G., Donohoe, K., Ward, L. & Reeves, P. R. (2007). Molecular markers with potential to replace phage typing for Salmonella enterica serovar Typhimurium. J Microbiol Methods 68, 145-156.
12. Lindstedt, B. A. (2005). Multiple-locus variable number tandem repeats analysis for genetic fingerprinting of pathogenic bacteria. Electrophoresis 26, 2567-2582.
13. Lindstedt, B. A., Heir, E., Vardund, T. & Kapperud, G. (2000). A variation of the amplified-fragment length polymorphism (AFLP) technique using three restriction endonucleases, and assessment of the enzyme combination BglII-MfeI for AFLP analysis of Salmonella enterica subsp. enterica isolates. FEMS Microbiol Lett 189, 19-24.
14. Lindstedt, B. A., Heir, E., Gjernes, E. & Kapperud, G. (2003). DNA fingerprinting of Salmonella enterica subsp. enterica serovar Typhimurium with emphasis on phage type DT104 based on variable number of tandem repeat loci. J Clin Microbiol 41, 1469-1479.
15. Lindstedt, B. A., Vardund, T., Aas, L. & Kapperud, G. (2004). Multiple-locus variable-number tandem-repeats analysis of Salmonella enterica subsp. enterica serovar Typhimurium using PCR multiplexing and multicolor capillary electrophoresis. J Microbiol Methods 59, 163-172.
16. Liu, Y., Lee, M. A., Ooi, E. E., Mavis, Y., Tan, A. L. & Quek, H. H. (2003). Molecular typing of Salmonella enterica serovar Typhi isolates from various countries in Asia by a multiplex PCR assay on variable-number tandem repeats. J Clin Microbiol 41, 4388-4394.
17. Mikasova, E., Drahovska, H., Szemes, T., Kuchta, T., Karpiskova, R., Sasik, M. & Turna, J. (2005). Characterization of Salmonella enterica serovar Typhimurium strains of veterinary origin by molecular typing methods. Vet Microbiol 109, 113-120.
18. Millemann, Y., Lesage, M. C., Chaslus-Dancla, E. & Lafont, J. P. (1995). Value of plasmid profiling, ribotyping, and detection of IS200 for tracing avian isolates of Salmonella Typhimurium and S. enteritidis. J Clin Microbiol 33, 173-179.
19. Nastasi, A. & Mammina, C. (1995). Epidemiological evaluation by PCR ribotyping of sporadic and outbreak-associated strains of Salmonella enterica serotype Typhimurium. Res Microbiol 146, 99-106.
20. Popoff, M. Y., Bockemuhl, J. & Gheesling, L. L. (2004). Supplement 2002 (no. 46) to the Kauffmann-White scheme. Res Microbiol 155, 568-570.
21. Ross, I. L. & Heuzenroeder, M. W. (2005). Discrimination within phenotypically closely related definitive types of Salmonella enterica serovar Typhimurium by the multiple amplification of phage locus typing technique. J Clin Microbiol 43, 1604-1611.
22. Soria, G., Barbe, J. & Gibert, I. (1994). Molecular fingerprinting of Salmonella Typhimurium by IS200-typing as a tool for epidemiological and evolutionary studies. Microbiologia 10, 57-68.
23. Witonski, D., Stefanova, R., Ranganathan, A., Schutze, G. E., Eisenach, K. D. & Cave, M. D. (2006). Variable-number tandem repeats that are useful in genotyping isolates of Salmonella enterica subsp. enterica serovars Typhimurium and Newport. J Clin Microbiol 44, 3849-3854.