Assessment of lectin and HILIC based enrichment protocols for characterization of serum glycoproteins by mass spectrometry

Journal of Proteomics

Volumn 71, Issue 3, 2008, Pages 304-317

  Calvano, Cosima D ^a,b,c   Zambonin, Carlo G ^b,c   Jensen, Ole N ^a  

^a UNIVERSITY OF SOUTHERN DENMARK   (Denmark)

^b UNIVERSITY OF BARI   (Italy)

^c Centro di Ricerca Spettrometria di Massa per Ricerche Tecnologiche (SMART)   (Italy)

Author keywords

Clinical proteomics; Glycopeptide sequencing; Glycoproteome; Tandem mass spectrometry

Indexed keywords

CONCANAVALIN A; GLYCOPEPTIDE; GLYCOPROTEIN; LECTIN; SAMBUCUS NIGRA EXTRACT; WHEAT GERM AGGLUTININ;

AFFINITY CHROMATOGRAPHY; AMINO ACID SEQUENCE; ANALYTIC METHOD; ARTICLE; BINDING AFFINITY; BLOOD SAMPLING; BREAST CANCER; CANCER PATIENT; CONTROLLED STUDY; ELECTROSPRAY MASS SPECTROMETRY; FEMALE; HUMAN; HYDROPHILIC INTERACTION CHROMATOGRAPHY; MASS SPECTROMETRY; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN BLOOD LEVEL; PROTEIN GLYCOSYLATION; PROTEOMICS; TANDEM MASS SPECTROMETRY; UNINDEXED SEQUENCE;

AMINO ACID SEQUENCE; BREAST NEOPLASMS; CASE-CONTROL STUDIES; ELECTROPHORESIS, POLYACRYLAMIDE GEL; FEMALE; GLYCOPEPTIDES; GLYCOSYLATION; HUMANS; LECTINS; MASS SPECTROMETRY; MEMBRANE PROTEINS; MOLECULAR SEQUENCE DATA; PROTEOMICS; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

EID: 48849109894     PISSN: 18743919     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jprot.2008.06.013     Document Type: Article

References (58)

1. Bertozzi C.R., and Kiessling L.L. Science 291 (2001) 2357-2364
2. Rudd P.M., Elliott T., Cresswell P., Wilson I.A., and Dwek R.A. Science 291 (2001) 2370-2376
3. Aebersold R., et al. J Proteome Res 4 (2005) 1104-1109
4. Kannagi R., Izawa M., Koike T., Miyazaki K., and Kimura N. Cancer Sci 95 (2004) 377-384
5. In: Varki A., et al. (Ed). Essentials of Glycobiology (1999), Cold Spring Harbour Press, Cold Spring Harbour, New York
6. Gewinner C., Hart G., Zachara N., Cole R., Beisenherz-Huss C., and Groner B. J Biol Chem 279 (2004) 3563-3572
7. Alikhani Z., Alikhani M., Boyd C.M., Nagao K., Trackman P.C., and Graves D.T. J Biol Chem 280 (2005) 12087-12095
8. Phan U.T., Waldron T.T., and Springer T.A. Nat Immunol 7 (2006) 883-889
9. Partridge E.A., Le Roy C., Di Guglielmo G.M., Pawling J., Cheung P., Granovsky M., et al. Science 306 (2004) 120-124
10. Durand G., and Seta N. Clin Chem 46 (2000) 795-805
11. Bakry N., Kamata Y., and Simpson L.L. J Pharmacol Exp Ther 258 (1991) 830-836
12. Becker J.W., Reeke Jr. G.N., Wang J.L., Cunningham B.A., and Edelman G.M. J Biol Chem 250 (1975) 1513-1524
13. Yang Z., and Hancock W.S. J Chromatogr A 1053 (2004) 79-88
14. Porter R.R. In: Gellhorn A., and Hirschberg E. (Eds). Basic Problems of Neoplastic Disease (1962), Columbia University Press, New York
15. Turner G.A. Clin Chim Acta 208 (1992) 149-171
16. Hellwage J., Kuhn S., and Zipfel P.F. Biochem J 326 (1997) 321-327
17. Junnikkala S., Jokiranta T.S., Friese M.A., Jarva H., Zipfel P.F., and Meri S. J Immunol 164 (2000) 6075-6081
18. Guidi L., Bartoloni C., Pellicano P., Capelli A., Cursi F., Pili R., et al. Clin Ther 136 (1991) 367-372
19. Yang Z., Harris L.E., Palmer-Toy D.E., and Hancock W.S. Clin Chem 52 (2006) 1897-1905
20. Zhao J., Patwa T., Qiu W., Shedden K., Hinderer R., Misek D., et al. J Proteome Res 6 (2007) 1864-1874
21. Donate F., Juarez J.C., Guan X., Shipulina N.V., Plunkett M.L., Tel-Tsur Z., et al. Cancer Res 64 16 (2004) 5812-5817
22. Olsson A.-K., Larsson H., Dixelius J., Johansson I., Lee C., Oellig C., et al. Cancer Res 64 2 (2004) 599-605
23. Villacampa M.J., Moro R., Naval J., Failly-Crepin C., Lampreave F., and Uriel J. Biochem Biophys Res Commun 122 (1984) 1322-1327
24. Biddle, et al. Breast Cancer Res Treat 10 (1987) 279-286
25. Jackson D., Craven R.A., Hutson R.C., Graze I., Lueth P., Tonge R.P., et al. Clin Cancer Res 13 (2007) 7370-7379
26. Khwaja F.W., Duke-Cohan J.S., Brat D.B., and Van Meir E.G. Human Cancer Biol 12 (2006) 6331-6336
27. Suarez Nieto C., Cuesta Garcia A., Fernandez Bustillo E., Mendez Olunga J.C., and Alvarez Marcos C. Clin Otolaryngol 11 1 (1986) 41-45
28. Uslu C., Taysi S., Akcay F., Sutbeyaz M.Y., and Bakan N. Ann Clin Lab Sci 33 (2003) 156-159
29. Roberts J.G., Keyser J.W., and Baum M. Br J Surg 62 10 (1975) 816-819
30. Wulfkuhle J.D., Lance L.A., and Petricoin E.F. Nat Rev Cancer 3 (2003) 267-275
31. Nawarak J., Phutrakul S., and Chen S.T. J Proteome Res 3 (2004) 383-392
32. Uematsu R., Furukawa J., Nakagawa H., Shinohara Y., Deguchi K., Monde K., et al. Mol Cell Proteomics 4 (2005) 1977-1989
33. Qiu R., and Regnier F.E. Anal Chem 77 (2005) 2802-2809
34. Gabius H.J., et al. Biochim Biophys Acta 1572 2-3 (2002) 165-177
35. Wang Y., Wu S.L., and Hancock W.S. Biotechnol Prog 22 3 (2006) 873-880
36. Drake R.R., Schwegler E.E., Malik G., Diaz J., Block T., Mehta A., et al. Mol Cell Proteomics 5.10 (2006) 1957-1967
37. Wang L., Li F., Sun W., Wu S., Wang X., Zhang L., et al. Mol Cell Proteomics 5 3 (2006) 560-562
38. Monzo A., Bonn G.K., and Guttman A. Trends Anal Chem 26 5 (2007) 423-432
39. Larsen M.R., Cordwell S.J., and Roepstorff P. Proteomics 2 9 (2002) 1277-1287
40. Gerard C. Methods Enzymol 182 (1990) 529-539
41. Brittain S.M., Ficarro S.B., Brock A., and Peters E.C. Nat Biotechnol 23 (2005) 463-468
42. Mirzaei H., and Regnier F. Anal Chem 77 (2005) 2386-2392
43. Zhang H., Li X.J., Martin D.B., and Aebersold R. Nat Biotechnol 21 (2003) 660-666
44. Zhang Q., Tang N., Brock J.W.C., Mottaz H.M., Ames J.M., Baynes J.W., et al. J Proteome Res 6 (2007) 2323-2330
45. Callesen A.K., Mohammed S., Bunkenborg J., Kruse T.A., Cold S., Mogensen O., et al. Rapid Commun Mass Spectrom 19 (2005) 1578-1586
46. Aresta A., Calvano C.D., Palmisano F., Zambonin C.G., Monaco A., Tommasi S., et al. J Pharm Biomed Anal 46 (2008) 157-164
47. Hagglund P., Bunkenborg J., Elortza F., Jensen O.N., and Roepstorff P. J Proteome Res 3 (2004) 556-566
48. Omaetxebarria M.J., Hagglund P., Elortza F., Hooper N.M., Arizmendi J.M., and Jensen O.N. Anal Chem 78 10 (2006) 3335-3341
49. Callesen A.K., Vach W., Jørgensen P.E., Cold S., Tan Q., Depont Christensen R., et al. J Proteome Res 4 (2008) 1419-1426
50. Yang Z., and Hancock W.S. J Chromatogr A 1053 (2004) 79-88
51. Bakry N., Kamata Y., and Simpson L.L. J Pharmacol Exp Ther 258 (1991) 830-836
52. Becker J.W., Reeke Jr. G.N., Wang J.L., Cunningham B.A., and Edelman G.M. J Biol Chem 250 (1975) 1513-1524
53. Hemstrom P., and Irgum K. J Sep Sci 29 (2006) 1784-1821
54. Burtis C.A., and Ashwood E.R. Tietz Fundamentals of Clinical Chemistry. 5th ed. (2001), W. B. Saunders Company, Philadelphia, PA
55. Sorenson R.C., Bisgaier C.L., Aviram M., Hsu C., Billecke S., and La Du B.N. Arterioscler Thromb Vasc Biol 19 (1999) 2214-2225
56. Kuster B., and Mann M. Anal Chem 71 (1999) 1431-1440
57. Hagglund P., Matthiesen R., Elortza F., Hojrup P., Roepstorff P., Jensen O.N., et al. J Proteome Res 6 8 (2007) 3021-3031
58. Guzzetta A.W., Basa L.J., Hancock W.S., Keyt B.A., and Bennett W.F. Anal Chem 65 (1993) 2953-2962