Timing and deciphering mitochondrial DNA macro-haplogroup R0 variability in Central Europe and Middle East

BMC Evolutionary Biology

Volumn 8, Issue 1, 2008, Pages

  Brandstätter, Anita ^a   Zimmermann, Bettina ^a   Wagner, Janine ^a,b   Göbel, Tanja ^a,c   Röck, Alexander W ^d   Salas, Antonio ^e   Carracedo, Angel ^e   Parson, Walther ^a  

^a INNSBRUCK MEDICAL UNIVERSITY   (Austria)

^b Research Center for Agriculture and Forestry Laimburg   (Italy)

^c UNIVERSITY OF COLOGNE   (Germany)

^d UNIVERSITY OF INNSBRUCK   (Austria)

^e UNIVERSITY OF SANTIAGO DE COMPOSTELA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

MITOCHONDRIAL DNA;

ARTICLE; AUSTRIA; DUBAI; GENE FLOW; GENE FREQUENCY; GERMANY; HAPLOTYPE; HUMAN; HUNGARY; MACEDONIA (REPUBLIC); MOLECULAR EVOLUTION; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; ROMANIA; SINGLE NUCLEOTIDE POLYMORPHISM; BASE MISPAIRING; ETHNOLOGY; EUROPE; GENETIC VARIABILITY; GENETICS; MIDDLE EAST; PHYLOGENY; POPULATION DYNAMICS; POPULATION GENETICS;

BASE PAIR MISMATCH; DNA, MITOCHONDRIAL; EUROPE; GENETICS, POPULATION; HAPLOTYPES; HUMANS; MIDDLE EAST; PHYLOGENY; POLYMORPHISM, SINGLE NUCLEOTIDE; POPULATION DYNAMICS; VARIATION (GENETICS);

EID: 48449101988     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-8-191     Document Type: Article

References (46)

1. A new radiocarbon revolution and the dispersal of modern humans in Eurasia. P Mellars, Nature 2006 439 931 935 16495989 10.1038/nature04521
2. Tracing European founder lineages in the Near Eastern mtDNA pool. M Richards V Macaulay E Hickey E Vega B Sykes V Guida C Rengo D Sellitto F Cruciani T Kivisild R Villems M Thomas S Rychkov O Rychkov Y Rychkov M Golge D Dimitrov E Hill D Bradley V Romano F Cäli G Vona A Demaine S Papiha C Triantaphyllidis G Stefanescu J Hatina M Belledi A Di Rienzo A Novelletto A Oppenheim S Norby N Al Zaheri S Santachiara-Benerecetti R Scozari A Torroni HJ Bandelt, Am J Hum Genet 2000 67 1251 1276 11032788
3. A signal, from human mtDNA, of postglacial recolonization in Europe. A Torroni HJ Bandelt V Macaulay M Richards F Cruciani C Rengo V Martinez-Cabrera R Villems T Kivisild E Metspalu J Parik HV Tolk K Tambets P Forster B Karger P Francalacci P Rudan B Janicijevic O Rickards ML Savontaus K Huoponen V Laitinen S Koivumaki B Sykes E Hickey A Novelletto P Moral D Sellitto A Coppa N Al Zaheri AS Santachiara-Benerecetti O Semino R Scozzari, Am J Hum Genet 2001 69 844 852 11517423 10.1086/323485
4. Mitochondrial DNA variation of modern Tuscans supports the near eastern origin of Etruscans. A Achilli A Olivieri M Pala E Metspalu S Fornarino V Battaglia M Accetturo I Kutuev E Khusnutdinova E Pennarun N Cerutti GC Di F Crobu D Palli G Matullo AS Santachiara-Benerecetti LL Cavalli-Sforza O Semino R Villems HJ Bandelt A Piazza A Torroni, Am J Hum Genet 2007 80 759 768 17357081 10.1086/512822
5. mtDNA haplogroups and frequency patterns in Europe. A Torroni M Richards V Macaulay P Forster R Villems S Norby ML Savontaus K Huoponen R Scozzari HJ Bandelt, Am J Hum Genet 2000 66 1173 1177 10712231 10.1086/302789
6. The molecular dissection of mtDNA haplogroup H confirms that the Franco-Cantabrian glacial refuge was a major source for the European gene pool. A Achilli C Rengo C Magri V Battaglia A Olivieri R Scozzari F Cruciani M Zeviani E Briem V Carelli P Moral JM Dugoujon U Roostalu EL Loogväli T Kivisild HJ Bandelt M Richards R Villems AS Santachiara-Benerecetti O Semino A Torroni, Am J Hum Genet 2004 75 910 918 15382008 10.1086/425590
7. Saami and berbers - an unexpected mitochondrial DNA link. A Achilli C Rengo V Battaglia M Pala A Olivieri S Fornarino C Magri R Scozzari N Babudri AS Santachiara-Benerecetti HJ Bandelt O Semino A Torroni, Am J Hum Genet 2005 76 883 886 15791543 10.1086/430073
8. Origin and diffusion of mtDNA haplogroup X. M Reidla T Kivisild E Metspalu K Kaldma K Tambets HV Tolk J Parik EL Loogväli MV Derenko B Malyarchuk M Bermisheva S Zhadanov E Pennarun M Gubina M Golubenko L Damba S Fedorova V Gusar E Grechanina I Mikerezi JP Moisan A Chaventre E Khusnutdinova L Osipova V Stepanov M Voevoda A Achilli C Rengo O Rickards GF De Stefano S Papiha L Beckman B Janicijevic P Rudan N Anagnou E Michalodimitrakis S Koziel E Usanga T Geberhiwot C Herrnstadt N Howell A Torroni R Villems, Am J Hum Genet 2003 73 1178 1190 14574647 10.1086/379380
9. mtDNA analysis reveals a major late Paleolithic population expansion from southwestern to northeastern Europe. A Torroni HJ Bandelt L D'Urbano P Lahermo P Moral D Sellitto C Rengo P Forster ML Savontaus B Bonne-Tamir R Scozzari, Am J Hum Genet 1998 62 1137 1152 9545392 10.1086/301822
10. Ice Ages and the mitochondrial DNA chronology of human dispersals: a review. P Forster, Philos Trans R Soc Lond B Biol Sci 2004 359 255 264 15101581 10.1098/rstb.2003.1394
11. Rapid screening of mtDNA coding region SNPs for the identification of west European Caucasian haplogroups. A Brandstätter TJ Parsons W Parson, Int J Legal Med 2003 117 291 298 12937995 10.1007/s00414-003-0395-2
12. Dissection of mitochondrial superhaplogroup H using coding region SNPs. A Brandstätter A Salas H Niederstätter C Gassner A Carracedo W Parson, Electrophoresis 2006 27 2541 2550 16721903 10.1002/elps.200500772
13. Disuniting uniformity: a pied cladistic canvas of mtDNA haplogroup H in Eurasia. EL Loogväli U Roostalu BA Malyarchuk MV Derenko T Kivisild E Metspalu K Tambets M Reidla HV Tolk J Parik E Pennarun S Laos A Lunkina M Golubenko L Barac M Pericic OP Balanovsky V Gusar EK Khusnutdinova V Stepanov V Puzyrev P Rudan EV Balanovska E Grechanina C Richard JP Moisan A Chaventre NP Anagnou KI Pappa EN Michalodimitrakis M Claustres M Golge I Mikerezi E Usanga R Villems, Mol Biol Evol 2004 21 2012 2021 15254257 10.1093/molbev/msh209
14. Harvesting the fruit of the human mtDNA tree. A Torroni A Achilli V Macaulay M Richards HJ Bandelt, Trends Genet 2006 22 339 345 16678300 10.1016/j.tig.2006.04.001
15. The emerging tree of West Eurasian mtDNAs: a synthesis of control- region sequences and RFLPs. V Macaulay M Richards E Hickey E Vega F Cruciani V Guida R Scozzari B Bonne-Tamir B Sykes A Torroni, Am J Hum Genet 1999 64 232 249 9915963 10.1086/302204
16. Phylogenetic network for European mtDNA. S Finnilä MS Lehtonen K Majamaa, Am J Hum Genet 2001 68 1475 1484 11349229 10.1086/320591
17. Origin and expansion of haplogroup h, the dominant human mitochondrial DNA lineage in west eurasia: the near eastern and caucasian perspective. U Roostalu I Kutuev EL Loogväli E Metspalu K Tambets M Reidla E Khusnutdinova E Usanga T Kivisild R Villems, Mol Biol Evol 2007 24 436 448 17099056 10.1093/molbev/msl173
18. High-resolution mtDNA evidence for the late-glacial resettlement of Europe from an Iberian refugium. L Pereira M Richards A Goios A Alonso C Albarran O Garcia DM Behar M Golge J Hatina L Al Gazali DG Bradley V Macaulay A Amorim, Genome Res 2005 15 19 24 15632086 10.1101/gr.3182305
19. Migration rates and genetic structure of two Hungarian ethnic groups in Transylvania, Romania. A Brandstätter B Egyed B Zimmermann N Duftner Z Padar W Parson, Ann Hum Genet 2007 71 791 803 17532745 10.1111/j.1469-1809.2007. 00371.x
20. Eurasian and African mitochondrial DNA influences in the Saudi Arabian population. KK Abu-Amero AM Gonzalez JM Larruga TM Bosley VM Cabrera, BMC Evol Biol 2007 7 32 17331239 10.1186/1471-2148-7-32
21. mtDNA analysis of the Galician population: a genetic edge of European variation. A Salas D Comas MV Lareu J Bertranpetit A Carracedo, Eur J Hum Genet 1998 6 365 375 9781045 10.1038/sj.ejhg.5200202
22. Epidemiology and penetrance of Leber hereditary optic neuropathy in Finland. A Puomila P Hamalainen S Kivioja ML Savontaus S Koivumaki K Huoponen E Nikoskelainen, Eur J Hum Genet 2007 15 1079 1089 17406640 10.1038/sj.ejhg. 5201828
23. Single nucleotide polymorphisms over the entire mtDNA genome that increase the power of forensic testing in Caucasians. MD Coble RS Just JE O'Callaghan IH Letmanyi CT Peterson JA Irwin TJ Parsons, Int J Legal Med 2004 118 137 146 14760490 10.1007/s00414-004-0427-6
24. Where west meets east: the complex mtDNA landscape of the southwest and Central Asian corridor. L Quintana-Murci R Chaix RS Wells DM Behar H Sayar R Scozzari C Rengo N Al Zahery O Semino AS Santachiara-Benerecetti A Coppa Q Ayub A Mohyuddin C Tyler-Smith MS Qasim A Torroni K McElreavey, Am J Hum Genet 2004 74 827 845 15077202 10.1086/383236
25. Insights into the western Bantu dispersal: mtDNA lineage analysis in Angola. S Plaza A Salas F Calafell F Corte-Real J Bertranpetit A Carracedo D Comas, Hum Genet 2004 115 439 447 15340834 10.1007/s00439-004-1164-0
26. The making of the African mtDNA landscape. A Salas M Richards T De la Fe MV Lareu B Sobrino P Sanchez-Diz V Macaulay A Carracedo, Am J Hum Genet 2002 71 1082 1111 12395296 10.1086/344348
27. Mitochondrial DNA-like sequences in the nucleus (NUMTs): insights into our African origins and the mechanism of foreign DNA integration. D Mishmar E Ruiz-Pesini M Brandon DC Wallace, Hum Mutat 2004 23 125 133 14722916 10.1002/humu.10304
28. Estimation of past demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: application to human mitochondrial DNA. S Schneider L Excoffier, Genetics 1999 152 3 1079 1089 10388826
29. Population growth makes waves in the distribution of pairwise genetic differences. AR Rogers H Harpending, Mol Biol Evol 1992 9 3 552 569 1316531
30. Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. M Slatkin RR Hudson, Genetics 1991 129 2 555 562 1743491
31. Patterns of DNA sequence diversity and genetic structure after a range expansion: lessons from the infinite-island model. L Excoffier, Mol Ecol 2004 13 853 864 15012760 10.1046/j.1365-294X.2003.02004.x
32. Intra-deme molecular diversity in spatially expanding populations. N Ray M Currat L Excoffier, Mol Biol Evol 2003 20 76 86 12519909 10.1093/molbev/msg009
33. Origin and evolution of Native American mtDNA variation: a reappraisal. P Forster R Harding A Torroni HJ Bandelt, Am J Hum Genet 1996 59 4 935 945 8808611
34. Clock debate: when times are a-changin': time dependency of molecular rate estimates: tempest in a teacup. HJ Bandelt, Heredity 2008 100 1 2 17940550 10.1038/sj.hdy.6801054
35. Estimation of mutation rates and coalescence times: some caveats. HJ Bandelt QP Kong M Richards V Macaulay, Human mitochondrial DNA and the evolution of Homo sapiens Berlin, Germany, Springer-Verlag, Bandelt HJ, Macaulay V and Richards M, 2006 47 90
36. Natural selection shaped regional mtDNA variation in humans. D Mishmar E Ruiz-Pesini P Golik V Macaulay AG Clark S Hosseini M Brandon K Easley E Chen MD Brown RI Sukernik A Olckers DC Wallace, Proc Natl Acad Sci U S A 2003 100 171 176 12509511 10.1073/pnas.0136972100
37. The matrilineal ancestry of ashkenazi jewry: portrait of a recent founder event. DM Behar E Metspalu T Kivisild A Achilli Y Hadid S Tzur L Pereira A Amorim L Quintana-Murci K Majamaa C Herrnstadt N Howell O Balanovsky I Kutuev A Pshenichnov D Gurwitz B Bonne-Tamir A Torroni R Villems K Skorecki, Am J Hum Genet 2006 78 487 497 16404693 10.1086/500307
38. Generating population data for the EMPOP database - an overview of the mtDNA sequencing and data evaluation processes considering 273 Austrian control region sequences as example. A Brandstätter H Niederstätter M Pavlic P Grubwieser W Parson, Forensic Sci Int 2007 166 164 175 16829006 10.1016/j.forsciint.2006.05.006
39. Application of a quasi-median network analysis for the visualization of character conflicts to a population sample of mitochondrial DNA control region sequences from southern Germany (Ulm). A Brandstätter R Klein N Duftner P Wiegand W Parson, Int J Legal Med 2006 120 310 314 16871406 10.1007/s00414-006- 0114-x
40. Mitochondrial DNA control region variation in Ashkenazi Jews from Hungary. A Brandstätter B Egyed B Zimmermann A Tordai Z Padar W Parson, FSI:Genetics 2008 2 e4 e6
41. Mitochondrial DNA control region population data from Macedonia. B Zimmermann A Brandstätter N Duftner D Niederwieser M Spiroski T Arsov W Parson, FSI:Genetics 2007 1 e4 e9
42. Mitochondrial DNA control region variation in Dubai, United Arab Emirates. F Alshamali A Brandstätter B Zimmermann W Parson, FSI:Genetics 2008 2 e9 e10
43. Network.exe version 4.5. 2008 http://www.fluxus-engineering.com
44. Median-joining networks for inferring intraspecific phylogenies. HJ Bandelt P Forster A Röhl, Mol Biol Evol 1999 16 1 37 48 10331250
45. Arlequin ver. 2.0: A software for population genetic data analysis. S Schneider D Roessli L Excoffier, Genetics and Biometry Laboratory, University of Geneva, Switzerland 2000
46. mtDNA variation among Greenland Eskimos: the edge of the Beringian expansion. J Saillard P Forster N Lynnerup HJ Bandelt S Norby, Am J Hum Genet 2000 67 718 726 10924403 10.1086/303038