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Volumn 153, Issue 1, 2008, Pages 25-32

Comparison of different methods to construct a core germplasm collection in woody perennial species with simple sequence repeat markers. A case study in cherimoya (Annona cherimola, Annonaceae), an underutilised subtropical fruit tree species

Author keywords

Ex situ conservation; Germplasm management; Plant genetic resources

Indexed keywords

COMPARATIVE STUDY; DECIDUOUS TREE; GERMPLASM; PERENNIAL PLANT; SUBTROPICAL REGION; WOODY PLANT;

EID: 48349128599     PISSN: 00034746     EISSN: 17447348     Source Type: Journal    
DOI: 10.1111/j.1744-7348.2008.00232.x     Document Type: Article
Times cited : (71)

References (43)
  • 1
    • 0029763020 scopus 로고    scopus 로고
    • Neutral genetic markers and conservation genetics: Simulated germplasm collections
    • Bataillon T.M., David J.L., Schoen D.J 1996) Neutral genetic markers and conservation genetics: simulated germplasm collections. Genetics, 144, 409 417.
    • (1996) Genetics , vol.144 , pp. 409-417
    • Bataillon, T.M.1    David, J.L.2    Schoen, D.J.3
  • 2
    • 0024916131 scopus 로고
    • Core collections: A practical approach to genetic resources management
    • Brown A.H.D. (1989) Core collections: a practical approach to genetic resources management. Genome, 31, 818 824.
    • (1989) Genome , vol.31 , pp. 818-824
    • Brown, A.H.D.1
  • 3
    • 0037965268 scopus 로고    scopus 로고
    • Implementing core collections-principles, procedures, progress, problems and promise
    • In. pp. Eds. R.C. Johnson. and. T. Hodgkin. Rome, Italy: International Plant Genetic Resources Institute.
    • Brown A.H.D., Spillane C. (1999) Implementing core collections- principles, procedures, progress, problems and promise. In Core Collections for Today and Tomorrow, pp. 1 9. Eds R.C. Johnson and T. Hodgkin. Rome, Italy: International Plant Genetic Resources Institute.
    • (1999) Core Collections for Today and Tomorrow , pp. 1-9
    • Brown, A.H.D.1    Spillane, C.2
  • 5
    • 0346035927 scopus 로고    scopus 로고
    • Optimal sampling strategy and core collection size of Andean tetraploid potato based on isozyme data - A simulation study
    • Chandra S., Huaman Z., Krishna S.H., Ortiz R. (2002) Optimal sampling strategy and core collection size of Andean tetraploid potato based on isozyme data - a simulation study. Theoretical and Applied Genetics, 104, 1325 1334.
    • (2002) Theoretical and Applied Genetics , vol.104 , pp. 1325-1334
    • Chandra, S.1    Huaman, Z.2    Krishna, S.H.3    Ortiz, R.4
  • 6
    • 9644302906 scopus 로고    scopus 로고
    • Ecology and cropping of cherimoya (Annona cherimola Mill.) in Latin America. New data from Ecuador
    • van Damme P., van Damme V., Scheldeman X. (2000) Ecology and cropping of cherimoya (Annona cherimola Mill.) in Latin America. New data from Ecuador. Fruits, 55, 195 206.
    • (2000) Fruits , vol.55 , pp. 195-206
    • Van Damme, P.1    Van Damme, V.2    Scheldeman, X.3
  • 9
    • 0034021510 scopus 로고    scopus 로고
    • Assessment of genetic diversity within and among germplasm accessions in cultivated sorghum using microsatellite markers
    • Dje Y., Heuertz M., Lefebvre C., Vekemans X. (2000) Assessment of genetic diversity within and among germplasm accessions in cultivated sorghum using microsatellite markers. Theoretical and Applied Genetics, 100, 918 925.
    • (2000) Theoretical and Applied Genetics , vol.100 , pp. 918-925
    • Dje, Y.1    Heuertz, M.2    Lefebvre, C.3    Vekemans, X.4
  • 10
    • 33644773833 scopus 로고    scopus 로고
    • SSR analysis of the Medicago truncatula SARDI core collection reveals substantial diversity and unusual genotype dispersal throughout the Mediterranean basin
    • Ellwood S.R., D'Souza N.K., Kamphuis L.G., Burgess T.I., Nair R.M., Oliver R.P. (2006) SSR analysis of the Medicago truncatula SARDI core collection reveals substantial diversity and unusual genotype dispersal throughout the Mediterranean basin. Theoretical and Applied Genetics, 112, 977 983.
    • (2006) Theoretical and Applied Genetics , vol.112 , pp. 977-983
    • Ellwood, S.R.1    D'Souza, N.K.2    Kamphuis, L.G.3    Burgess, T.I.4    Nair, R.M.5    Oliver, R.P.6
  • 11
    • 34249017375 scopus 로고    scopus 로고
    • Molecular analysis of genetic diversity and geographic origin within an ex situ germplasm collection of cherimoya by using SSRs
    • Escribano P., Viruel M.A., Hormaza J.I. (2007) Molecular analysis of genetic diversity and geographic origin within an ex situ germplasm collection of cherimoya by using SSRs. Journal of the American Society for Horticultural Science, 132, 357 367.
    • (2007) Journal of the American Society for Horticultural Science , vol.132 , pp. 357-367
    • Escribano, P.1    Viruel, M.A.2    Hormaza, J.I.3
  • 12
    • 85007110786 scopus 로고    scopus 로고
    • Arlequin ver. 3.0: An integrated software package for population genetics data analysis
    • Excoffier L., Laval G., Schneider S. (2005) Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 1, 47 50.
    • (2005) Evolutionary Bioinformatics Online , vol.1 , pp. 47-50
    • Excoffier, L.1    Laval, G.2    Schneider, S.3
  • 13
    • 0036813894 scopus 로고    scopus 로고
    • Identifying and selecting for genetic diversity in Papua New Guinea sweetpotato Ipomoea batatas (L.) Lam. germplasm collected as botanical seed
    • Fajardo S., La Bonte D.R., Jarret R.L. (2002) Identifying and selecting for genetic diversity in Papua New Guinea sweetpotato Ipomoea batatas (L.) Lam. germplasm collected as botanical seed. Genetic Resources and Crop Evolution, 49, 463 470.
    • (2002) Genetic Resources and Crop Evolution , vol.49 , pp. 463-470
    • Fajardo, S.1    La Bonte, D.R.2    Jarret, R.L.3
  • 14
    • 18744374647 scopus 로고    scopus 로고
    • A sampling strategy for conserving genetic diversity when forming core subsets
    • Franco J., Crossa J., Taba S., Shands H. (2005) A sampling strategy for conserving genetic diversity when forming core subsets. Crop Science, 45, 1035 1044.
    • (2005) Crop Science , vol.45 , pp. 1035-1044
    • Franco, J.1    Crossa, J.2    Taba, S.3    Shands, H.4
  • 15
    • 33644971390 scopus 로고    scopus 로고
    • Sampling strategies for conserving maize diversity when forming core subsets using genetic markers
    • Franco J., Crossa J., Warburton M.L., Taba S. (2006) Sampling strategies for conserving maize diversity when forming core subsets using genetic markers. Crop Science, 46, 854 864.
    • (2006) Crop Science , vol.46 , pp. 854-864
    • Franco, J.1    Crossa, J.2    Warburton, M.L.3    Taba, S.4
  • 16
    • 0002030882 scopus 로고
    • Current plant genetic resources - A critical appraisal
    • In. pp. Eds. V.L. Chopra, B.C. Joshi, R.P. Sharma. and. H.C. Bansal. New Delhi, India: Oxford and IBH Publishing.
    • Frankel O.H., Brown A.H.D. (1984) Current plant genetic resources - a critical appraisal. In Genetics: New Frontiers. Volume 4, pp. 1 13. Eds V.L. Chopra, B.C. Joshi, R.P. Sharma and H.C. Bansal. New Delhi, India: Oxford and IBH Publishing.
    • (1984) Genetics: New Frontiers. , vol.4 , pp. 1-13
    • Frankel, O.H.1    Brown, A.H.D.2
  • 17
    • 0032727713 scopus 로고    scopus 로고
    • Marker-assisted sampling of the cultivated Andean potato Solanum phureja collection using RAPD markers
    • Ghislain M., Zhang D., Fajardo D., Huaman Z., Hijmans R.J 1999) Marker-assisted sampling of the cultivated Andean potato Solanum phureja collection using RAPD markers. Genetic Resources and Crop Evolution, 46, 547 555.
    • (1999) Genetic Resources and Crop Evolution , vol.46 , pp. 547-555
    • Ghislain, M.1    Zhang, D.2    Fajardo, D.3    Huaman, Z.4    Hijmans, R.J.5
  • 18
    • 0035033739 scopus 로고    scopus 로고
    • MSTRAT: An algorithm for building germ plasm core collections by maximizing allelic or phenotypic richness
    • Gouesnard B., Bataillon T.M., Decoux G., Rozale C., Schoen D.J., David J.L. (2001) MSTRAT: an algorithm for building germ plasm core collections by maximizing allelic or phenotypic richness. Journal of Heredity, 92, 93 94.
    • (2001) Journal of Heredity , vol.92 , pp. 93-94
    • Gouesnard, B.1    Bataillon, T.M.2    Decoux, G.3    Rozale, C.4    Schoen, D.J.5    David, J.L.6
  • 19
    • 0033926179 scopus 로고    scopus 로고
    • Assessment of genetic diversity in three subsets constituted from the ICRISAT sorghum collection using random vs non-random sampling procedures. A. Using morpho-agronomical and passport data
    • Grenier C., Bramel-Cox P.J., Noirot M., Rao K.E.P., Hamon P. (2000a) Assessment of genetic diversity in three subsets constituted from the ICRISAT sorghum collection using random vs non-random sampling procedures. A. Using morpho-agronomical and passport data. Theoretical and Applied Genetics, 101, 190 196.
    • (2000) Theoretical and Applied Genetics , vol.101 , pp. 190-196
    • Grenier, C.1    Bramel-Cox, P.J.2    Noirot, M.3    Rao, K.E.P.4    Hamon, P.5
  • 20
    • 0033928968 scopus 로고    scopus 로고
    • Assessment of genetic diversity in three subsets constituted from the ICRISAT sorghum collection using random vs non-random sampling procedures B. Using molecular markers
    • Grenier C., Deu M., Kresovich S., Bramel-Cox P.J., Hamon P. (2000b) Assessment of genetic diversity in three subsets constituted from the ICRISAT sorghum collection using random vs non-random sampling procedures B. Using molecular markers. Theoretical and Applied Genetics, 101, 197 202.
    • (2000) Theoretical and Applied Genetics , vol.101 , pp. 197-202
    • Grenier, C.1    Deu, M.2    Kresovich, S.3    Bramel-Cox, P.J.4    Hamon, P.5
  • 21
    • 33644509581 scopus 로고    scopus 로고
    • Genetic diversity and core collection evaluations in common wheat germplasm from the Northwestern Spring Wheat Region in China
    • Hao C.Y., Zhang X.Y., Wang L.F., Dong Y.S., Shang X.W., Jia J.Z. (2006) Genetic diversity and core collection evaluations in common wheat germplasm from the Northwestern Spring Wheat Region in China. Molecular Breeding, 17, 69 77.
    • (2006) Molecular Breeding , vol.17 , pp. 69-77
    • Hao, C.Y.1    Zhang, X.Y.2    Wang, L.F.3    Dong, Y.S.4    Shang, X.W.5    Jia, J.Z.6
  • 23
    • 0033931188 scopus 로고    scopus 로고
    • Methods of constructing core collections by stepwise clustering with three sampling strategies based on the genotypic values of crops
    • Hu J., Zhu J., Xu H.M. (2000) Methods of constructing core collections by stepwise clustering with three sampling strategies based on the genotypic values of crops. Theoretical and Applied Genetics, 101, 264 268.
    • (2000) Theoretical and Applied Genetics , vol.101 , pp. 264-268
    • Hu, J.1    Zhu, J.2    Xu, H.M.3
  • 24
    • 14744275099 scopus 로고
    • The dynamics of a core collection
    • In. pp. Eds. T. Hodgkin, A.D.H. Brown. and. Th.J.L. van Hintum. Chichester, UK: John Wiley and Sons.
    • Jaradat A.A. (1995) The dynamics of a core collection. In Core Collection of Plant Genetic Resources, pp. 179 186. Eds T. Hodgkin, A.D.H. Brown and Th.J.L. van Hintum. Chichester, UK: John Wiley and Sons.
    • (1995) Core Collection of Plant Genetic Resources , pp. 179-186
    • Jaradat, A.A.1
  • 25
    • 29144473038 scopus 로고    scopus 로고
    • Development of an RFLP-based rice diversity research set of germplasm
    • Kojima Y., Ebana K., Fukuoka S., Nagamine T., Kawase M 2005) Development of an RFLP-based rice diversity research set of germplasm. Breeding Science, 55, 431 440.
    • (2005) Breeding Science , vol.55 , pp. 431-440
    • Kojima, Y.1    Ebana, K.2    Fukuoka, S.3    Nagamine, T.4    Kawase, M.5
  • 26
    • 2142669423 scopus 로고    scopus 로고
    • Methods of developing core collections based on the predicted genotypic value of rice (Oryza sativa L.)
    • Li C.T., Shi C.H., Wu J.G., Xu H.M., Zhang H.Z., Ren Y.L. (2004) Methods of developing core collections based on the predicted genotypic value of rice (Oryza sativa L.). Theoretical and Applied Genetics, 108, 1172 1176.
    • (2004) Theoretical and Applied Genetics , vol.108 , pp. 1172-1176
    • Li, C.T.1    Shi, C.H.2    Wu, J.G.3    Xu, H.M.4    Zhang, H.Z.5    Ren, Y.L.6
  • 27
    • 18744382780 scopus 로고    scopus 로고
    • PowerMarker: An integrated analysis environment for genetic marker analysis
    • Liu K.J., Muse S.V. (2005) PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics, 21, 2128 2129.
    • (2005) Bioinformatics , vol.21 , pp. 2128-2129
    • Liu, K.J.1    Muse, S.V.2
  • 28
    • 0035084825 scopus 로고    scopus 로고
    • Distribution of allozymic alleles and genetic diversity in the American barley core collection
    • Liu F., Sun G.L., Salomon B., von Bothmer R. (2001) Distribution of allozymic alleles and genetic diversity in the American barley core collection. Theoretical and Applied Genetics, 102, 606 615.
    • (2001) Theoretical and Applied Genetics , vol.102 , pp. 606-615
    • Liu, F.1    Sun, G.L.2    Salomon, B.3    Von Bothmer, R.4
  • 31
    • 0038641418 scopus 로고
    • Core collections for gene banks with limited resources
    • In. pp. Eds. T. Hodgkin, A.D.H. Brown. and. Th.J.L. van Hintum. Chichester, UK: John Wiley and Sons.
    • Morales E.A.V., Valois A.C.C., Costa I.R.S. (1995) Core collections for gene banks with limited resources. In Core Collection of Plant Genetic Resources, pp. 241 249. Eds T. Hodgkin, A.D.H. Brown and Th.J.L. van Hintum. Chichester, UK: John Wiley and Sons.
    • (1995) Core Collection of Plant Genetic Resources , pp. 241-249
    • Morales, E.A.V.1    Valois, A.C.C.2    Costa, I.R.S.3
  • 37
    • 0002731430 scopus 로고
    • Maximizing genetic diversity in core collections of wild relatives of crop species
    • In. pp. Eds. T. Hodgkin, A.D.H. Brown. and. Th.J.L. van Hintum. Chichester, UK: John Wiley and Sons.
    • Schoen D.J., Brown A.H.D. (1995) Maximizing genetic diversity in core collections of wild relatives of crop species. In Core Collection of Plant Genetic Resources, pp. 55 76. Eds T. Hodgkin, A.D.H. Brown and Th.J.L. van Hintum. Chichester, UK: John Wiley and Sons.
    • (1995) Core Collection of Plant Genetic Resources , pp. 55-76
    • Schoen, D.J.1    Brown, A.H.D.2
  • 39
    • 0031866686 scopus 로고    scopus 로고
    • Comparison of Mexican common bean (Phaseolus vulgaris L.) core and reserve germplasm collections
    • Skroch P.W., Nienhuis J., Beebe S., Tohme J., Pedraza F. (1998) Comparison of Mexican common bean (Phaseolus vulgaris L.) core and reserve germplasm collections. Crop Science, 38, 488 496.
    • (1998) Crop Science , vol.38 , pp. 488-496
    • Skroch, P.W.1    Nienhuis, J.2    Beebe, S.3    Tohme, J.4    Pedraza, F.5
  • 40
    • 0001872799 scopus 로고
    • Assumptions of analysis of variance
    • Sokal, R.R., Rohlf, F.J. (. Eds. In. pp. New York, NY, USA: W.H. Freeman and Company.
    • Sokal R.R., Rohlf F.J. (Eds 1995) Assumptions of analysis of variance. In Biometry: the Principles and Practise of Statistics in Biological Research, pp. 392 450. New York, NY, USA: W.H. Freeman and Company.
    • (1995) Biometry: The Principles and Practise of Statistics in Biological Research , pp. 392-450
  • 41
    • 0030880972 scopus 로고    scopus 로고
    • Seed banks and molecular maps: Unlocking genetic potential from the wild
    • Tanksley S.D., McCouch S.R. (1997) Seed banks and molecular maps: unlocking genetic potential from the wild. Science, 277, 1063 1066.
    • (1997) Science , vol.277 , pp. 1063-1066
    • Tanksley, S.D.1    McCouch, S.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.