SSR analysis of the Medicago truncatula SARDI core collection reveals substantial diversity and unusual genotype dispersal throughout the Mediterranean basin

Theoretical and Applied Genetics

Volumn 112, Issue 5, 2006, Pages 977-983

  Ellwood, S R ^a   D'Souza, N K ^a   Kamphuis, L G ^a   Burgess, T I ^a   Nair, R M ^b   Oliver, R P ^a  

^a MURDOCH UNIVERSITY   (Australia)

^b SOUTH AUSTRALIAN RESEARCH AND DEVELOPMENT INSTITUTE   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

COMMERCE; GENES; MORPHOLOGY;

GENE FLOW; SSR LOCI;

BIODIVERSITY;

MICROSATELLITE DNA;

ALLELE; ANIMAL; ARTICLE; BARREL MEDIC; CLASSIFICATION; GENETIC VARIABILITY; GENETICS; GENOTYPE; GEOGRAPHY; MEDITERRANEAN SEA; PHYLOGENY; RANDOMIZATION;

ALLELES; ANIMALS; GENOTYPE; GEOGRAPHY; MEDICAGO TRUNCATULA; MEDITERRANEAN SEA; MICROSATELLITE REPEATS; PHYLOGENY; RANDOM ALLOCATION; VARIATION (GENETICS);

ANIMALIA; MEDICAGO TRUNCATULA;

EID: 33644773833     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-005-0202-1     Document Type: Article

References (39)

1. Agapow P-M, Burt A (2000) MultiLocus v1.2.2. Imperial College, London
2. Baquerizo-Audiot E, Desplanque B, Prosperi J, Santoni S (2001) Characterization of microsatellite loci in the diploid legume Medicago truncatula (barrel medic). Mol Ecol Notes:1-3
3. Bataillon TM, David JL, Schoen DJ (1996) Neutral genetic markers and conservation genetics: simulated germplasm collections. Genetics 144:409-417
4. Bevan J, Crute I, Clarke D (1993a) Diversity and variation in expression of resistance to Erysiphe fischeri in Senecio vulgaris. Plant Pathol 42:647-653
5. Bevan J, Crute I, Clarke D (1993b) Resistance to Erysiphe fischeri in two populations of Senecio vulgaris. Plant Pathol 42:636-646
6. Bonnin I, Ronfort J, Wozniak F, Olivieri I (2001) Spatial effects and rare outcrossing events in Medicago truncatula (Fabaceae). Mol Ecol 10:1371-1383
7. Brown AHD (1989a) The case for core collections. In: Brown AHD, Frankel OH, Marshall DR, Williams JT (eds) The use of plant genetic resources. Cambridge University Press, Cambridge, pp 136-156
8. Brown AHD (1989b) Core collections: a practical approach to genetic resources management. Genome 31:818-824
9. Choi H-K, Kim D, Uhm T, Limpens E, Lim H, Mun J-H, Kalo P, Penmetsa RV, Seres A, Kulikova O, Roe BA, Bisseling T, Kiss GB, Cook DR (2004) A sequence-based genetic map of Medicago truncatula and comparison of marker colinearity with M. sativa. Genetics 166:1463-1502
10. Crawford EJ, Lake AWH, Boyce KG (1989) Breeding annual Medicago species for semi-arid conditions in southern Australia. Adv Agron 42:399-437
11. Doyle J (2001) Leguminosae. In: Brenner SMJ (ed) Encyclopaedia of genetics. Academic, San Diego, pp 1081-1085
12. Eujayl I, Sledge M, Wang L, May G, Chekhovskiy K, Zwonitzer J, Mian M (2004) Medicago truncatula EST-SSRs reveal cross-species genetic markers for Medicago spp. Theor Appl Genet 108:414-422
13. Goldstein D, Linares A, Cavalli-Sforza L, Feldman M (1995) Genetic absolute dating based on microsatellites and the origin of modern humans. Proc Natl Acad Sci USA 92:6723-6727
14. Gouesnard B, Bataillon TM, Decoux G, Rozale C, Schoen DJ, David JL (2001) MSTRAT: an algorithm for building germ plasm core collections by maximizing allelic or phenotypic richness. J Hered 92:93-94
15. Gupta P, Rustgi S, Sharma S, Singh R, Kumar N, Balyan H (2003) Transferable EST-SSR markers for the study of polymorphism and genetic diversity in bread wheat. Mol Genet Genomics 270:315-323
16. Gustafsson S, Lonn M (2003) Genetic differentiation and habitat preference of flowering-time variants within Gymnadenia conopsea. Heredity 91:284-292
17. Hammerli A, Reusch T (2003) Genetic neighbourhood of clone structures in eelgrass meadows quantified by spatial autocorrelation of microsatellite markers. Heredity 91:448-455
18. Hayden M, Stephenson P, Logojan A, Khatkar D, Rogers C, Koebner R, Snape J, Sharp P (2004) A new approach to extending the wheat marker pool by anchored PCR amplification of compound SSRs. Theor Appl Genet 108:733-742
19. Heyn C (1963) The annual species of Medicago. Scripta Hierosolymitana 12:1-154
20. Kumar S, Tamura K, Jakobsen IB, Nei M (2001) MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17:1244-1245
21. Lunney HWM (1983) Vegetable fault in Australian wool: Classification, consequences, and economic loss. J Aust Inst Agric Sci 49:207-211
22. McKhann HI, Camilleri C, Berard A, Bataillon T, David JL, Reboud X, Le Corre V, Caloustian C, Gut IG, Brunel D (2004) Nested core collections maximizing genetic diversity in Arahidopsis thaliana. Plant J 38:193-202
23. Minch E, Ruiz-Linares A, Goldstein D (1995) Microsat 1.4, a computer program for the calculation of genetic distance from microsatellite data. Stanford University Medical Centre, Stanford
24. Nei M (1973) Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci USA 70:3321-3323
25. Nei M (1987) Molecular evolutionary genetics. Columbia University Press, New York
26. Peakall R, Gilmore S, Keys W, Morgante M, Rafalski A (1998) Cross-species amplification of soybean (Glycine max) simple sequence repeats (SSRs) within the genus and other legume genera: implications for the transferability of SSRs in plants. Mol Biol Evol 15:1275-1287
27. Pearson CJ, Brown R, Collins WJ, Archer KA, Wood MS, Petersen C, Bootle B (1997) An Australian temperate pastures database. Aust J Agric Res 48:453-466
28. Raymond M, Roussel F (1995) Genepop version 1.2: population genetics software for exact tests and ecumenicism. J Hered 86:248-249
29. Saha MC, Mian MAR, Eujayl I, Zwonitzer JC, Wang L, May GD (2004) Tall fescue EST-SSR markers with transferability across several grass species. Theor Appl Genet 109:783-791
30. Schoen D, Brown A (1993) Conservation of allelic richness in wild crop relatives is aided by assessment of genetic markers. Proc Natl Acad Sci USA 90:10623-10627
31. Skinner D, Bauchan G, Auricht G, Hughes S (1999) A method for the efficient management and utilization of large germplasm collections. Crop Sci 39:1237-1242
32. Small E, Jomphe M (1989) A synopsis of the genus Medicago (Leguminosae). Can J Bot 67:3260-3294
33. Thiel T, Michalek W, Varshney R, Graner A (2003) Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.). Theor Appl Genet 106:411-422
34. Thoquet P, Ghérardi M, Journet E, Kereszt A, Ané J, Prosperi J, Huguet T (2002) The molecular genetic linkage map of the model legume Medicago truncatula: an essential tool for comparative legume genomics and the isolation of agronomically important genes. BMC Plant Biol 2
35. Workman P, Niswander J (1970) Population studies on southwestern Indian tribes. II. Local genetic differentiation in the Papago. Am J Hum Genet 22:24-49
36. Yan H, Mudge J, Kim D, Shoemaker R, Cook D, Young N (2004) Comparative physical mapping reveals features of microsynteny between Glycine max, Medicago truncatula, and Arabidopsis thaliana. Genome 47:141-55
37. Yeh F, Yang R, Boyle T (1999) POPGENE version 1.31. Microsoft Windows-based software for population genetics analysis. University of Alberta and Centre for International Forestry Research, Alberta
38. Young N, Mudge J, Ellis T (2003) Legume genomes: more than peas in a pod. Curr Opin Plant Biol 6:199-204
39. Yu J-K, La Rota M, Kantety RV, Sorrells ME (2004) EST derived SSR markers for comparative mapping in wheat and rice. Mol Genet Genomics 271:742-751