Quick identification of Type I restriction enzyme isoschizomers using newly developed pTypeI and reference plasmids

Nucleic Acids Research

Volumn 36, Issue 13, 2008, Pages

  Ryu, Junichi ^a   Rowsell, Edward ^a  

^a LOMA LINDA UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMPICILLIN; TYPE I SITE SPECIFIC DEOXYRIBONUCLEASE;

ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL GENETICS; BACTERIAL STRAIN; CONTROLLED STUDY; ENZYME ANALYSIS; ENZYME SYNTHESIS; ESCHERICHIA COLI; FEASIBILITY STUDY; ISOSCHIZOMER; NONHUMAN; PLASMID; PRIORITY JOURNAL; CHEMISTRY; ENZYME SPECIFICITY; ENZYMOLOGY; STANDARD;

DEOXYRIBONUCLEASES, TYPE I SITE-SPECIFIC; ESCHERICHIA COLI; PLASMIDS; REFERENCE STANDARDS; SUBSTRATE SPECIFICITY;

EID: 48349095389     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkn056     Document Type: Article

References (17)

1. Bickle,T.A. and Kruger,D.H. (1993) Biology of DNA restriction. Microbiol.Rev., 57, 434-450.
2. Roberts,R.J., Belfort,M., Bestor,T., Bhagwat,A.S., Bickle,T.A., Bitinaite,J., Blumenthal,R.M., Degtyarev,S.K., Dryden,D.T., Dybvig,K. et al. (2003) A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes. Nucleic Acids Res., 31, 1805-1812.
3. Roberts,R.J., Vincze,T., Posfai,J. and Macelis,D. (2007) REBASE - enzymes and genes for DNA restriction and modification. Nucleic Acids Res., 35, D269-D270.
4. Gingeras,T.R:, Mllazzo,J.P. and Roberts,R.J. (1978) A computer assisted method for the determination of restriction enzyme recognition sites. Nucleic Acids Res., 5, 4105-4127.
5. Nagaraja,V., Stieger,M., Nager,C., Hadi,S.M. and Bickle,T.A. (1985) The nucleotide sequence recognized by the Escherichia coli D Type I restriction and modification enzyme. Nucleic Acids Res., 13, 389-399.
6. Kasadian,J.K.A., Iida,M. and Ryu,J. (2003) New restriction enzymes discovered from Escherichia coli clinical strains using a plasmid transformation method. Nucleic Acids Res., 31, e22.
7. Ellrot,K.P., Kasarjian,J.K.A., Jiang,T. and Ryu,J. (2002) Restriction enzymes recognition sequence search program. Biotechniques, 33 1322-1326.
8. Chin,V., Valinluck,V., Magaki,S. and Ryu,J. (2004) KpnBI is the prototype of a new family (IE) of bacterial Type I restriction- modification system. Nucleic Acids Res., 32, e138.
9. Kasarjian,J.K.A., Hidaka,M.; Horiuchi,T., Iida,M. and Ryu,J. (2004) The recognition and modification sites for the bacterial Type I restriction systems KpnAI, StySEAI, StySENI and StySGI. Nucleic Acid Res., 32, e82.
10. Kasarjian,J.K.A., Kodama,Y., Iida,M., Matsuda,K. and Ryu,J. (2005) Four new Type I restriction enzymes identified in Escherichia coli clinical isolates. Nucleic Acid Res., 33, e114.
11. Bullas,L.R., Colson,C. and Neufeld,B. (1980) Deoxyribonucleic acid restriction modification systems in Salmonella: Chromosomally located systems of different scrotypes. J. Bacteriol., 141, 275-292.
12. Yanisch-Perron,C., Vieira,J. and Messing,J. (1985) Improved M13 phage cloning vectors and host strains: Nucleotide sequences of the M13mpl8 and pUC19 vectors, Gene, 33, 103-119.
13. Thompson,J.M. and Parrott,W.A. (1998) pMECA: A Cloning Plasmid with 44 Unique Restriction Sites that Allows Selection of Recombinants Based on Colony Size. Biotechniques, 24, 922-928.
14. Janulaitis,A., Kazlauskiene,R., Lazareviciunte,L., Gilvonauskaite,R., Steponaviciene,D., Jagelavicius,M., Petrusyte, Bitinaite,J., Vizeviciute,Z., Kiuduliene,E. et al. (1988) Taxonomic specificity of restriction-modification enzymes. Gene, 74, 229-232.
15. Daniel,A., Fuller-Pace,F., Legge,D. and Murray,N. (1988) Distribution and Diversity of hsd genes in Escherichia coli and Other Enteric Bacteria. J. Bacteriol., 170, 1775-1782.
16. Barcus,V., Titheradge,A. and Murray,N. (1995) The Diversity of Alleles at the hsd Locus in Natural Population of Escherichia coli. Genetics, 140, 1187-1197.
17. Ochman,H. and Selander,R.K. (1984) Standard Reference Strains of Escherichia coli from Natural Populations. J. Bacteriol., 157, 690-693.