Outlining eicosanoid biosynthesis in the crustacean Daphnia

Frontiers in Zoology

Volumn 5, Issue , 2008, Pages

  Heckmann, Lars Henrik ^a,b   Sibly, Richard M ^a   Timmermans, Martijn Jtn ^c   Callaghan, Amanda ^a  

^a UNIVERSITY OF READING   (United Kingdom)

^b AARHUS UNIVERSITY   (Denmark)

^c VU UNIVERSITY AMSTERDAM   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

BRANCHIOPODA; CRUSTACEA; DAPHNIA; DAPHNIA MAGNA; DAPHNIA PULEX; DAPHNIIDAE; INVERTEBRATA; MAMMALIA; VERTEBRATA;

EID: 48349088589     PISSN: None     EISSN: 17429994     Source Type: Journal    
DOI: 10.1186/1742-9994-5-11     Document Type: Article

References (41)

1. Eicosanoids in invertebrate signal transduction systems. DW Stanley, New Jersey, Princeton University Press 2000
2. Prostaglandins in non-insectan invertebrates: recent insights and unsolved problems. AF Rowley CL Vogan GW Taylor AS Clare, Journal of Experimental Biology 2005 208 1 3 14 10.1242/jeb.01275 15601872
3. Current problems with non-specific COX inhibitors. P McGettigan D Henry, Current Pharmaceutical Design 2000 6 17 1693 1724 10.2174/1381612003398690 11102559
4. LPA(3)-mediated lysophosphatidic acid signalling in embryo implantation and spacing. XQ Ye K Hama JJA Contos B Anliker A Inoue MK Skinner H Suzuki T Amano G Kennedy H Arai J Aoki J Chun, Nature 2005 435 7038 104 108 15875025 10.1038/nature03505
5. Prostaglandins and leukotrienes: Advances in eicosanoid biology. CD Funk, Science 2001 294 5548 1871 1875 10.1126/science.294.5548.1871 11729303
6. From molecular action to physiological outputs: Peroxisome proliferator-activated receptors are nuclear receptors at the crossroads of key cellular functions. JN Feige L Gelman L Michalik B Desvergne W Wahli, Progress in Lipid Research 2006 45 2 120 159 10.1016/j.plipres.2005.12.002 16476485
7. The origin of 15R-prostaglandins in the Caribbean coral Plexaura homomalla: Molecular cloning and expression of a novel cyclooxygenase. K Valmsen I Jarving WE Boeglin K Varvas R Koljak T Pehk AR Brash N Samel, Proceedings of the National Academy of Sciences of the United States of America 2001 98 14 7700 7705 11427702 10.1073/pnas.131022398
8. The lipoxygenase pathway of arachidonic acid metabolism in reproductive tissues of the firebrat, Thermobia domestica (Thysanura). A Ragab J Durand C Bitsch H Chap M Rigaud, Insect Biochemistry 1991 21 3 321 326 10.1016/0020-1790(91)90022-7
9. Reproduction recovery of the crustacean Daphnia magna following chronic exposure to ibuprofen. Y Hayashi LH Heckmann A Callaghan RM Sibly, Ecotoxicology 2008 17 246 251 10.1007/s10646-008-0191-3 18214676
10. Chronic toxicity of ibuprofen to Daphnia magna: Effects on life history traits and population dynamics. LH Heckmann A Callaghan HL Hooper R Connon TH Hutchinson SJ Maund RM Sibly, Toxicology Letters 2007 172 3 137 145 10.1016/j.toxlet.2007.06.001 17658227
11. Expression of target and reference genes in Daphnia magna exposed to ibuprofen. LH Heckmann R Connon TH Hutchinson SJ Maund RM Sibly A Callaghan, BMC Genomics 2006 7 175 16827938 10.1186/1471-2164-7-175
12. Systems biology meets stress ecology: Linking molecular and organismal stress responses in Daphnia magna. LH Heckmann RM Sibly R Connon HL Hooper TH Hutchinson SJ Maund CJ Hill A Bouetard A Callaghan, Genome Biology 2008 9 2 R40 18291039 10.1186/gb-2008-9-2-r40
13. Reproductive and developmental effects of endocrine disrupters in invertebrates: in vitro and in vivo approaches. TH Hutchinson, Toxicology Letters 2002 131 1-2 75 81 10.1016/S0378-4274(02)00046-2 11988360
14. JGI Genome Portal. http://www.jgi.doe.gov/Daphnia
15. wFleaBase. http://wFleaBase.org
16. Daphnia Genomics Consortium. http://daphnia.cgb.indiana.edu
17. Gene Ontology: tool for the unification of biology. M Ashburner CA Ball JA Blake D Botstein H Butler JM Cherry AP Davis K Dolinski SS Dwight JT Eppig MA Harris DP Hill L Issel-Tarver A Kasarskis S Lewis JC Matese JE Richardson M Ringwald GM Rubin G Sherlock, Nature Genetics 2000 25 1 25 29 10.1038/75556 10802651
18. KEGG: Kyoto Encyclopedia of Genes and Genomes. M Kanehisa S Goto, Nucleic Acids Research 2000 28 1 27 30 10592173 10.1093/nar/28.1.27
19. GenBank. http://www.ncbi.nlm.nih.gov/Genbank/
20. Ensembl. http://www.ensembl.org/
21. Multiple sequence alignment with the Clustal series of programs. R Chenna H Sugawara T Koike R Lopez TJ Gibson DG Higgins JD Thompson, Nucleic Acids Research 2003 31 13 3497 3500 12824352 10.1093/nar/gkg500
22. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. J Castresana, Mol Biol Evol 2000 17 4 540 552 10742046
23. Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified. TM Keane CJ Creevey MM Pentony TJ Naughton JO McLnerney, BMC Evolutionary Biology 2006 6 29 16563161 10.1186/1471-2148-6-29
24. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. S Guindon O Gascuel, Systematic Biology 2003 52 5 696 704 10.1080/10635150390235520 14530136
25. BIONJ: An improved version of the NJ algorithm based on a simple model of sequence data. O Gascuel, Molecular Biology and Evolution 1997 14 685 695
26. TreeView: an application to display phylogenetic trees on personal computers. RDM Page, Comput Appl Biosci 1996 12 4 357 358 8902363
27. On the evolutionary origin of cyclooxygenase (COX) isozymes - Characterization of marine invertebrate COX genes points to independent duplication events in vertebrate and invertebrate lineages. R Järving I Järving R Kurg AR Brash N Samel, Journal of Biological Chemistry 2004 279 14 13624 13633 10.1074/jbc.M313258200 14732711
28. At what stage in metazoan evolution did leukotriene generation first appear? - key insights from cartilaginous fish. EL Morgan BH Maskrey AF Rowley, Developmental and Comparative Immunology 2005 29 1 53 59 10.1016/j.dci.2004.05. 001
29. Molecular cloning and functional expression of a Caenorhabditis elegans aminopeptidase structurally related to mammalian leukotriene A(4) hydrolases. HA Baset AW Ford-Hutchinson GP O'Neill, Journal of Biological Chemistry 1998 273 43 27978 27987 10.1074/jbc.273.43.27978 9774412
30. Leukotriene A4 hydrolase, insights into the molecular evolution by homology modeling and mutational analysis of enzyme from Saccharomyces cerevisiae. F Tholander F Kull E Ohlson J Shafqat MMGM Thunnissen JZ Haeggström, J Biol Chem 2004 280 39 33477-33486
31. Structural basis of leukotriene B-4 12-hydroxydehydrogenase/15-oxo- prostaglandin 13-reductase catalytic mechanism and a possible Src homology 3 domain binding loop. T Hori T Yokomizo H Ago M Sugahara G Ueno M Yamamoto T Kumasaka T Shimizu M Miyano, Journal of Biological Chemistry 2004 279 21 22615 22623 10.1074/jbc.M312655200 15007077
32. The structure of mammalian 15-lipoxygenase reveals similarity to the lipases and the determinants of substrate specificity. SA Gillmor A Villasẽor R Fletterick E Sigal MF Browner, Nature Structural Biology 1997 4 12 1003 1009 10.1038/nsb1297-1003 9406550
33. Eicosanoid biosynthesis in an advanced deuterostomate invertebrate, the sea squirt (Ciona intestinalis). J Knight GW Taylor P Wright AS Clare AF Rowley, Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids 1999 1436 3 467 478 10.1016/S0005-2760(98)00153-2
34. Identification of 12-Lipoxygenase in the hemolymph of tiger shrimp (Penaeus japonicus Bate). JM Kuo BS Pan HJ Zhang JB German, Journal of Agricultural and Food Chemistry 1994 42 8 1620 1623 10.1021/jf00044a007
35. The role of lipoxygenase products on the endocytosis of yolk proteins in insects: Participation of cAMP. MN Medeiros LH Mendonca AL Hunter GO Paiva-Silva FG Mello IP Henze H Masuda CM Maya-Monteiro EA Machado, Archives of Insect Biochemistry and Physiology 2004 55 4 178 187 10.1002/arch.10129
36. Prostaglandin E(2) in previtellogenic ovaries of the prawn Macrobrachium rosenbergii: Synthesis and effect on the level of cAMP. A Sagi J Silkovsky S Fleisher-Berkovich A Danon R Chayoth, General and Comparative Endocrinology 1995 100 3 308 313 10.1006/gcen.1995.1161
37. Leukotriene B4, an arachidonic acid metabolite, regulates intracellular free calcium release in eggs and mitotic cells of the sand dollar (Echinaracnius parma). RB Silver JB Oblak GS Jeun JJ Sung TC Dutta, Biological Bulletin 1994 187 2 242 244 7811799
38. Changes in prostaglandin E(2) and F2-alpha during vitellogenesis in the Florida crayfish Procambarus paeninsulanus. EP Spaziani GW Hinsch SC Edwards, Journal of Comparative Physiology B: Biochemical, Systemic and Environmental Physiology 1993 163 7 541 545 10.1007/BF00302112
39. Prostaglandins - Their role in egg-laying of the cricket Teleogryllus commodus. W Loher I Ganjian I Kubo D Stanley-Samuelson SS Tobe, Proceedings of the National Academy of Sciences of the United States of America 1981 78 12 7835 7838 16593135 10.1073/pnas.78.12.7835
40. Eicosanoids mediate insect nodulation responses to bacterial infections. JS Miller T Nguyen DW Stanley-Samuelson, Proceedings of the National Academy of Sciences of the United States of America 1994 91 26 12418 12422 7809052 10.1073/pnas.91.26.12418
41. KEGG: Kyoto Encyclopedia of Genes and Genomes. http://www.genome.jp/kegg/