Application of RLGS method for detection of alteration in tissue cultured plants

Japan Agricultural Research Quarterly

Volumn 42, Issue 3, 2008, Pages 151-155

  Takamiya, Tomoko ^a,b,c   Ohtake, Yuhko ^a   Hosobuchi, Saeko ^a,b   Noguchi, Tomotsugu ^a,b   Kawase, Makoto ^a   Murakami, Yasufumi ^b   Okuizumi, Hisato ^a  

^a NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

^b TOKYO UNIVERSITY OF SCIENCE   (Japan)

^c NIHON UNIVERSITY   (Japan)

Author keywords

DNA methylation

Indexed keywords

EID: 48249109876     PISSN: 00213551     EISSN: None     Source Type: Journal    
DOI: 10.6090/jarq.42.151     Document Type: Article

References (12)

1. Cheng, C., Daigen, M. & Hirochika, H. (2006) Epigenetic regulation of the rice retrotransposon Tos17. Mol. Genet. Genomics, 276, 378-390.
2. Chu, C. C. et al. (1975) Establishment of an efficient medium for anther culture of rice through comparative experiments on the nitrogen sources. Sci. Sin., 18, 659-668.
3. Hatada, I. et al. (1991) A genomic scanning method for higher organisms using restriction sites as landmarks. Proc. Natl. Acad. Sci. USA, 88, 9523-9527.
4. Hayashizaki, Y. et al. (1993) Restriction landmark genomic scanning method and its various applications. Electrophoresis, 14, 251-258.
5. Hiei, Y. et al. (1994) Efficient transformation of rice (Oryza sativa L.) mediated by Agrobacterium and sequence analysis of the boundaries of the T-DNA. Plant J., 6, 271-282.
6. Hirochika, H. et al. (1996) Retrotransposons of rice involved in mutations induced by tissue culture. Proc. Natl. Acad. Sci. USA, 93, 7783-7788.
7. Kaeppler, S. M. & Phillips, R. L. (1993) Tissue culture-induced DNA methylation variation in maize. Proc. Natl. Acad. Sci. USA, 90, 8773-8776.
8. Kawase, M. (1994) Application of the restriction landmark genomic scanning (RLGS) method to rice cultivars as a new fingerprinting technique. Theor. Appl. Genet., 89, 861-864.
9. Liu, Z. L. et al. (2004) Activation of a rice endogenous retrotransposon Tos17 in tissue culture is accompanied by cytosine demethylation and causes heritable alteration in methylation pattern of flanking genomic regions. Theor. Appl. Genet., 109, 200-209.
10. Ohsumi, T. et al. (1995) Loss of heterozygosity in chromosomes 1, 5, 7 and 13 in mouse hepatoma detected by systematic genome-wide scanning using RLGS genetic map. Biochem. Biophys. Res. Commun., 212, 632-639.
11. Okamoto, H. et al. (2006) Development of a new cultivar-discrimination method based on DNA polymorphism in a vegetatively propagated crop. JARQ, 40, 65-69.
12. Takamiya, T. et al. (2006) Restriction landmark genome scanning method using isoschizomers (MspI/HpaII) for DNA methylation analysis. Electrophoresis, 27, 2846-2856.