Protein profiling of single epidermal cell types from Arabidopsis thaliana using surface-enhanced laser desorption and ionization technology

Journal of Plant Physiology

Volumn 165, Issue 12, 2008, Pages 1227-1237

  Ebert, Berit ^a   Melle, Christian ^b   Lieckfeldt, Elke ^a   Zöller, Daniela ^a   von Eggeling, Ferdinand ^b   Fisahn, Joachim ^a  

^a MAX PLANCK INSTITUTE OF MOLECULAR PLANT PHYSIOLOGY   (Germany)

^b FRIEDRICH SCHILLER UNIVERSITY JENA   (Germany)

Author keywords

Arabidopsis; Epidermis; Proteome; SELDI MS; Single cell

Indexed keywords

ARABIDOPSIS PROTEIN;

ARABIDOPSIS; ARTICLE; CYTOLOGY; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; MASS SPECTROMETRY; METABOLISM; PHYSIOLOGY; PLANT EPIDERMIS;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; PLANT EPIDERMIS; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 48149093868     PISSN: 01761617     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jplph.2008.01.006     Document Type: Article

References (48)

1. Angeles G., Berrio-Sierra J., Joseleau J.P., Lorimier P., Lefebvre A., and Ruel K. Preparative laser capture microdissection and single-pot cell wall material preparation: a novel method for tissue-specific analysis. Planta 224 (2006) 228-232
2. Ashida H., Saito Y., Kojima C., Kobayashi K., Ogasawara N., and Yokota A. A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO. Science 302 (2003) 286-290
3. Barroso C., Romero L.C., Cejudo F.J., Vega J.M., and Gotor C. Salt-specific regulation of the cytosolic O-acetylserine(thiol)lyase gene from Arabidopsis thaliana is dependent on abscisic acid. Plant Mol Biol 40 (1999) 729-736
4. Brandt S. Microgenomics: gene expression analysis at the tissue-specific and single-cell levels. J Exp Bot 56 (2005) 495-505
5. Brandt S., Kehr J., Walz C., Imlau A., Willmitzer L., and Fisahn J. Technical advance: a rapid method for detection of plant gene transcripts from single epidermal, mesophyll and companion cells of intact leaves. Plant J 20 (1999) 245-250
6. Brandt S., Kloska S., Altmann T., and Kehr J. Using array hybridization to monitor gene expression at the single cell level. J Exp Bot 53 (2002) 2315-2323
7. Calo L., Garcia I., Gotor C., and Romero L.C. Leaf hairs influence phytopathogenic fungus infection and confer an increased resistance when expressing a Trichoderma alpha-1,3-glucanase. J Exp Bot 57 (2006) 3911-3920
8. Ciordia S., de Los Rios V., and Albar J.P. Contributions of advanced proteomics technologies to cancer diagnosis. Clin Translational Oncol 8 (2006) 566-580
9. Cobbett C., and Goldsbrough P. Phytochelatins and metallothioneins: roles in heavy metal detoxification and homeostasis. Annu Rev Plant Biol 53 (2002) 159-182
10. Conrads T.P., Hood B.L., Issaq H.J., and Veenstra T.D. Proteomic patterns as a diagnostic tool for early-stage cancer: a review of its progress to a clinically relevant tool. Mol Diagnosis 8 (2004) 77-85
11. Craven R.A., and Banks R.E. Laser capture microdissection and proteomics: possibilities and limitation. Proteomics 1 (2001) 1200-1204
12. de Bont J.M., and den Boer M.L. Identification of apolipoprotein A-II in cerebrospinal fluid of pediatric brain tumor patients by protein expression profiling. Clin Chem 52 (2006) 1501-1509
13. Dresselhaus T., Lorz H., and Kranz E. Representative cDNA libraries from few plant cells. Plant J 5 (1994) 605-610
14. El-Gendy W., Brownleader M.D., et al. Rapid deposition of wheat cell wall structural proteins in response to fusarium-derived elicitors. J Exp Bot 52 (2001) 85-90
15. Fink L., Kwapiszewska G., Wilhelm J., and Bohle R.M. Laser-microdissection for cell type- and compartment-specific analyses on genomic and proteomic level. Exp Toxicol Pathol 57 (2006) 25-29
16. Galbraith D.W., and Birnbaum K. Global studies of cell type-specific gene expression in plants. Annu Rev Plant Biol 57 (2006) 451-475
17. Garcia-Hernandez M., Murphy A., and Taiz L. Metallothioneins 1 and 2 have distinct but overlapping expression patterns in Arabidopsis. Plant Physiol 118 (1998) 387-397
18. Gjetting T., Hagedorn P.H., Schweizer P., Thordal-Christensen H., Carver T.L., and Lyngkjaer M.F. Single-cell transcript profiling of barley attacked by the powdery mildew fungus. Mol Plant Microbe Interact 20 (2007) 235-246
19. Glover B.J. Differentiation in plant epidermal cells. J Exp Bot 51 (2000) 497-505
20. Gotor C., Cejudo F.J., Barroso C., and Vega J.M. Tissue-specific expression of ATCYS-3A, a gene encoding the cytosolic isoform of O-acetylserine(thiol)lyase in Arabidopsis. Plant J 11 (1997) 347-352
21. Greenbaum D., Colangelo C., Williams K., and Gerstein M. Comparing protein abundance and mRNA expression levels on a genomic scale. Genome Biol 4 (2003) 117
22. Gutierrez-Alcala G., Gotor C., Meyer A.J., Fricker M., Vega J.M., and Romero L.C. Glutathione biosynthesis in Arabidopsis trichome cells. Proc Natl Acad Sci USA 97 (2000) 11108-11113
23. Gygi S.P., Rochon Y., Franza B.R., and Aebersold R. Correlation between protein and mRNA abundance in yeast. Mol Cell Biol 19 (1999) 1720-1730
24. Gygi S.P., Corthals G.L., Zhang Y., Rochon Y., and Aebersold R. Evaluation of two dimensional gel electrophoresis-based proteome analysis technology. Proc Natl Acad Sci USA 97 (2000) 9390-9395
25. Issaq H.J., Veenstra T.D., Conrads T.P., and Felschow D. The SELDI-TOF MS approach to proteomics: protein profiling and biomarker identification. Biochem Biophys Res Commun 292 (2002) 587-592
26. Karrer E.E., Lincoln J.E., Hogenhout S., Bennett A.B., Bostock R.M., Martineau B., et al. In situ isolation of mRNA from individual plant cells: creation of cell-specific cDNA libraries. Proc Natl Acad Sci USA 92 (1995) 3814-3818
27. Kehr J. High resolution spatial analysis of plant systems. Curr Opin Plant Biol 4 (2001) 197-201
28. Kehr J. Single cell technology. Curr Opin Plant Biol 6 (2003) 617-621
29. Kessler A., and Baldwin I.T. Plant responses to insect herbivory: the emerging molecular analysis. Annu Rev Plant Biol 53 (2002) 299-328
30. Kriegova E., Melle C., Kolek V., Hutyrova B., Mrazek F., Bleul A., et al. Protein profiles of bronchoalveolar lavage fluid from patients with pulmonary sarcoidosis. Am J Respir Crit Care Med 173 (2006) 1145-1154
31. Kryvych S., Nikiforova V., Herzog M., Perazza D., and Fisahn J. Gene expression profiling of the different stages of Arabidopsis thaliana trichome development on the single cell level. Plant Physiol Biochem (2007)
32. Lieckfeldt E., Simon-Rosin U., Kose F., Zöller D., Schliep M., and Fisahn J. Gene expression profiling of single epidermal, basal and trichome cells of Arabidopsis thaliana. J. Plant Physiol (2007) 10.1016/j.jplph.2007.06.017
33. Melaragno J.E., Mehrotra B., and Coleman A.W. Relationship between endopolyplody and cell size in epidermal tissue of Arabidopsis. Plant Cell 5 (1993) 1661-1668
34. Melle C., Ernst G., et al. Biomarker discovery and identification in laser microdissected head and neck squamous cell carcinoma with ProteinChip technology, two-dimensional gel electrophoresis, tandem mass spectrometry, and immunohistochemistry. Mol Cell Proteomics 2 (2003) 443-452
35. Merchant M., and Weinberger S.R. Recent advancements in surface-enhanced laser desorption/ionization-time of flight-mass spectrometry. Electrophoresis 21 (2000) 1164-1177
36. Patton W.F. Detection technologies in proteome analysis. J Chromatogr B Anal Technol Biomed Life Sci 771 (2002) 3-31
37. Paweletz C.P., Gillispie J.W., and Ornstein D.K. Rapid protein display profiling of cancer progression directly from human tissue using a protein biochip. Drug Dev Res 49 (2000) 34-42
38. Paweletz C.P., Liotta L.A., and Petricoin E.F. New technologies for biomarker analysis of prostate cancer progression: laser capture microdissection and tissue proteomics. Urology 57 (2001) 160-163
39. Pyke K.A., and Page A.M. Plastid ontogeny during petal development in Arabidopsis. Plant Physiol 116 (1998) 797-803
40. Rawel H.M., Ranters H., Rohn S., and Kroll J. Assessment of the reactivity of selected isoflavones against proteins in comparison to quercetin. J Agric Food Chem 52 (2004) 5263-5271
41. Schad M., Lipton M.S., Giavalisco P., Smith R.D., and Kehr J. Evaluation of two-dimensional electrophoresis and liquid chromatography-tandem mass spectrometry for tissue-specific protein profiling of laser-microdissected plant samples. Electrophoresis 26 (2005) 2729-2738
42. Schnable P.S., Hochholdinger F., and Nakazono M. Global expression profiling applied to plant development. Curr Opin Plant Biol 7 (2004) 50-56
43. Tomos A.D., and Leigh R.A. The pressure probe: a versatile tool in plant cell physiology. Annu Rev Plant Biol 50 (1999) 447-472
44. von Eggeling F., Davies H., Lomas L., Fiedler W., Junker K., Claussen U., et al. Tissue-specific microdissection coupled with ProteinChip array technologies: applications in cancer research. Biotechniques 29 (2000) 1066-1070
45. Wienkoop S., Zoeller D., Ebert B., Simon-Rosin U., Fisahn J., Glinski M., et al. Cell-specific protein profiling in Arabidopsis thaliana trichomes: identification of trichome-located proteins involved in sulfur metabolism and detoxification. Phytochemistry 65 (2004) 1641-1649
46. Wiesner A. Detection of tumor markers with ProteinChip technology. Curr Pharm Biotechnol 5 (2004) 45-67
47. Xiao Z., Prieto D., Conrads T.P., Veenstra T.D., and Issaq H.J. Proteomic patterns: their potential for disease diagnosis. Mol Cell Endocrinol 230 (2005) 95-106
48. Zuo X., Hembach P., Echan L., and Speicher D.W. Enhanced analysis of human breast cancer proteomes using micro-scale solution isoelectrofocusing combined with high resolution 1-D and 2-D gels. J Chromatogr B Anal Technol Biomed LifeSci 782 (2002) 253-265