Review and evaluation of estuarine biotic indices to assess benthic condition

Ecological Indicators

Volumn 9, Issue 1, 2009, Pages 1-25

  Pinto, Rute ^a   Patrício, Joana ^a   Baeta, Alexandra ^a   Fath, Brian D ^b   Neto, João M ^a   Marques, João Carlos ^a  

^a UNIVERSITY OF COIMBRA   (Portugal)

^b TOWSON UNIVERSITY   (United States)

Author keywords

Benthic communities; Biotic indices; Ecological indicators; Ecosystem integrity; Estuaries; Mondego estuary

Indexed keywords

OFFSHORE OIL WELL PRODUCTION; PARAMETER ESTIMATION; PROBLEM SOLVING; QUALITY ASSURANCE; RELIABILITY;

(I ,J) CONDITIONS; APPLIED (CO); BENTHIC COMMUNITIES; BIOTIC INDICES; CASE STUDIES; CONDITION INDEX; ECOLOGICAL INDICES; ELSEVIER (CO); GENERAL (CO); INDEX OF BIOTIC INTEGRITY (IBI); PORTUGAL; WATER FRAMEWORK DIRECTIVE (WFD);

DECISION MAKING;

BENTHOS; BIOINDICATOR; BIOTIC FACTOR; COMMUNITY ECOLOGY; DECISION MAKING; ECOSYSTEM HEALTH; ESTUARINE ECOSYSTEM; INDEX OF BIOTIC INTEGRITY; PERFORMANCE ASSESSMENT;

COIMBRA [PORTUGAL]; EURASIA; EUROPE; MONDEGO ESTUARY; PORTUGAL; SOUTHERN EUROPE;

EID: 48149087096     PISSN: 1470160X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ecolind.2008.01.005     Document Type: Review

References (109)

1. Alden III R.W., Dauer D.M., Ranasinghe J.A., Scott L.C., and Llansó R.J. Statistical verification of the Chesapeake Bay benthic index of biotic integrity. Environmetrics 13 (2002) 473-498
2. Bald J., Borja A., Muxika I., Franco J., and Valencia V. Assessing reference conditions and physico-chemical status according to the European Water Framework Directive: a case-study from the Basque Country (Northern Spain). Mar. Pollut. Bull. 50 (2005) 1508-1522
3. Bergen M., Cadien D., Dalkey A., Montagne D.E., Smith R.W., Stull J.K., Velarde R.G., and Weisberg S.B. Assessment of benthic infaunal condition on the mainland shelf of Southern California. Environ. Monit. Assess. 64 (2000) 421-434
4. Blanchet H., et al. Use of biotic indices in semi-enclosed coastal ecosystems and transitional waters habitats-implications for the implementation of the European Water Framework Directive. Ecol. Indicat. 8 (2008) 360-372
5. Blocksom K.A. A performance comparison of metric scoring methods for a multimetric index for mid-Atlantic highlands streams. Environ. Manage. 31 5 (2003) 670-682
6. Böhmer J., Rawer-Jost C., Zenker A., Meier C., Feld C.K., Biss R., and Hering D. Assessing streams in Germany with benthic invertebrates: development of a multimetric invertebrate based assessment system. Limnologica 34 (2004) 416-432
7. Borja A. The new European Marine Strategy Directive: difficulties, opportunities, and challenges. Mar. Pollut. Bull. 52 (2006) 239-242
8. Borja A., Dauer D.M., Díaz R., Llansó R.J., Muxika I., Rodríguez J.G., and Schaffner L. Assessing estuarine benthic quality conditions in Chesapeake Bay: a comparison of three indices. Ecol. Indicat. 8 (2008) 395-403
9. Borja A., Franco J., and Pérez V. A marine biotic index to establish the ecological quality of soft-bottom benthos within European estuarine and coastal environments. Mar. Pollut. Bull. 40 12 (2000) 1100-1114
10. Broeg K., and Lehtonen K.K. Indices for the assessment of environmental pollution of the Baltic Sea coasts: integrated assessment of a multi-biomarker approach. Mar. Pollut. Bull. 53 8-9 (2006) 508-522
11. Brown A.C., and McLachland A. Ecology of Sandy Shores (1990), Elsevier, Amsterdam 328 pp.
12. Caeiro S., Costa M.H., Ramos T.B., Fernandes F., Silveira N., Coimbra A., Medeiros G., and Painho M. Assessing heavy metal contamination in Sado estuary sediment: An index analysis approach. Ecol. Indicat. 5 (2005) 151-169
13. Carletta J. Assessing agreement on classification tasks: the kappa statistic. Comput. Linguist. 22 2 (1996) 249-254
14. Carr, R.S., Gaston, G.R., 2002. Calcasieu Estuary Remedial Investigation/Feasibility Study (RI/FS): Baseline Ecological Risk Assessment (BERA). Document control no. 3282-941-RTZ-RISKZ-14858.
15. Carvalho S., Gaspar M.B., Moura A., Vale C., Antunes P., Gil O., Fonseca L.C., and Falcão M. The use of the marine biotic index AMBI in the assessment of the ecological status of the Óbidos lagoon (Portugal). Mar. Pollut. Bull. 52 (2006) 1414-1424
16. Cicchetti G., Latimer J.S., Rego S.A., Nelson W.G., Bergen B.J., and Coiro L.L. Relationships between near-bottom dissolved oxygen and sediment profile camera measures. J. Mar. Syst. 62 (2006) 124-141
17. Costanza R. Ecological economics: reintegrating the study of humans and nature. Ecol. Appl. 6 4 (1996) 978-990
18. Costanza R., d'Arge R., de Groot R., Farber S., Grasso M., Hannon B., Limburg K., Naeem S., O'Neill R.V., Paruelo J., Raskin R.G., Sutton P., and van den Belt M. The value of the world's ecosystem services and natural capital. Nature 387 (1997) 253-260
19. Dauer D.M. Biological criteria, environmental health and estuarine macrobenthic community structure. Mar. Pollut. Bull. 26 (1993) 249-257
20. Dauvin J.C. Paradox of estuarine quality: benthic indicators and indices, consensus or debate for the future. Mar. Pollut. Bull. 55 (2007) 271-281
21. Dauvin J.C., and Ruellet T. Polychaete/amphipod ratio revisited. Mar. Pollut. Bull. 55 (2007) 215-224
22. Dauvin J.C., Ruellet T., Desroy N., and Janson A.L. The ecological quality status of the Bay of Seine and the Seine estuary: use of biotic indices. Mar. Pollut. Bull. 55 1-6 (2006) 241-257
23. Deegan L.A., Finn J.T., Ayvazian S.G., Ryder C.A., and Buonaccorsi J. Development and validation of an estuarine biotic integrity index. Estuaries 20 3 (1997) 601-617
24. Díaz R.J., Solan M., and Valente R.M. A review of approaches for classifying benthic habitats and evaluating habitat quality. J. Environ. Manage. 73 (2004) 165-181
25. Donath-Hernàndez F.E., and Loya-Salinas D.H. Contribución al studio de la contaminación organica marina de la Bahia de Todos Santos, Baja California. Contribution to the study of organic marine pollution in Bahia de Todos Santos, Baja California. Cienc. Mar. 15 1 (1989) 73-88
26. Eagle R.A., and Rees E.I. Indicator species-a case for caution. Mar. Pollut. Bull. 4 (1973) 25
27. Eaton L. Development and validation of biocriteria using benthic macroinvertebrates for North Carolina estuarine waters. Mar. Pollut. Bull. 42 1 (2001) 23-30
28. Engle V.D. Application of the indicator evaluation guidelines to an index of benthic condition for Gulf of Mexico estuaries. In: Jackson L.E., Kurtz J.C., and Fisher W.S. (Eds). Evaluation Guidelines for Ecological Indicators. EPA/620/R-99/005 (2000), U.S. Environmental Protection Agency, Office of Research and Development, Research Triangle Park, NC 107 pp.
29. Engle V.D., and Summers J.K. Refinement, validation, and application of a benthic condition index for Gulf of Mexico estuaries. Estuaries 22 (1999) 624-635
30. Engle V.D., Summers J.K., and Gaston G.R. A benthic index of environmental condition of Gulf of Mexico estuaries. Estuaries 17 (1994) 372-384
31. Fausch K.D., Lyons J., Karr J.R., and Angermeier P.L. Fish communities as indicators of environmental degradation. Am. Fish Soc. Symp. 8 (1990) 123-144
32. Gaston G.R., Rakocinski C.F., Brown S.S., and Cleveland L.M. Trophic function in estuaries: response of macrobenthos to natural and contaminant gradients. Mar. Freshwater Res. 49 (1998) 833-846
33. Gibson G.R., Bowman M.L., Gerritsen J., and Snyder B.D. Estuarine and Coastal Marine Waters: Bioassessment and Biocriteria Technical Guidance. EPA 822-B-00-024 (2000), U.S. Environmental Protection Agency, Office of Water, Washington, DC
34. Glémarec, M., 1986. Ecological impact of an oil-spill: utilization of biological indicators. IAWPRC-NERC Conference, July 1985. IAWPRC J., vol. 18, pp. 203-211.
35. Gómez-Gesteira J.L., and Dauvin J.C. Amphipods are good bioindicators of the impact of oil spills on soft-bottom macrobenthic communities. Mar. Pollut. Bull. 40 11 (2000) 1017-1027
36. Grall J., and Glémarec M. Using biotic indices to estimate macrobenthic community perturbations in the Bay of Brest. Estuar. Coast. Shelf Sci. 44 Suppl. A (1997) 43-53
37. Gray J.S. Pollution induced changes in populations. Philos. Trans. R. Soc. Lond., Ser. B 286 (1979) 545-561
38. Gray J.S., and Pearson T.H. Objective selection of sensitive species indicative of pollution-induced change in benthic communities: a comparative methodology. Mar. Ecol. Prog. Ser. 9 (1982) 111-119
39. Hale S.S., and Heltshe J.F. Signals from the benthos: development and evaluation of a benthic index for the nearshore Gulf of Maine. Ecol. Indicat. 8 (2008) 338-350
40. Hilsenhoff W.L. An improved biotic index of organic stream pollution. Great Lakes Entomol. 20 (1987) 31-39
41. Hily, C., 1984. Variabilité de la macrofauna benthique dans les milieux hypertrophiques de la Rade de Brest. Thése de Doctorat d'Etat, Univ. Bretagne Occidentale, vol. 1, 359 pp; vol. 2, 337 pp.
42. Hurlbert S.H. The nonconcept of species diversity: a critique and alternative parameters. Ecology 52 (1971) 577-586
43. Hyatt E. Editorial. Ecol. Indicat. 1 (2001) 1-2
44. Jameson S.C., Erdmann M.V., Karr J.R., Gibson Jr. G.R., and Potts K.W. Charting a course toward diagnostic monitoring: a continuing review of coral reef attributes and a research strategy for creating coral reef indexes of biotic integrity. Bull. Mar. Sci. 69 (2001) 701-744
45. Jeffrey D.W., Wilson J.G., Harris C.R., and Tomlinson D.L. The application of two simple indices to Irish estuary pollution status. In: Wilson J.G., and Halcrow W. (Eds). Estuarine Management and Quality Assessment (1985), Plenum Press, London
46. Jenkins, S., Burrows, M., Garbary, D., Hawkins, S., Ingolffson, A., Moore, P., Sebens, K., Snelgrove, P., Wethey, D., Woodin, S., 2007. Comparisons of the Ecology of Shores Across the North Atlantic: Do Differences in Players Matter for Process? Special Feature. http://www.biology.duke.edu/corona/Ecology/Jenkins.et.al.pdf.
47. Karr J.R. Biological integrity: a long neglected aspect of water resource management. Ecol. Appl. 1 (1991) 66-84
48. Karr J., and Chu E.W. Biological monitoring: essential foundation for ecological risk assessment. Hum. Ecol. Risk Assess. 3 (1997) 993-1004
49. Kennish M.J. Ecology of Estuaries: Anthropogenic Effects. Marine Science Series (1992), CRC Press, Boca Raton, FL
50. Kennish M.J. Pollution Impacts on Marine Biotic Communities (1997), CRC Press
51. Labrune C., Amouroux J.M., Sarda R., Dutrieux E., Thorin S., Rosenberg R., and Grémare A. Characterization of the ecological quality of the coastal Gulf of Lions (NW Mediterranean). A comparative approach based on three biotic indices. Mar. Pollut. Bull. 52 (2006) 34-47
52. Landis J.R., and Koch G.G. The measurement of observer agreement for categorical data. Biometrics 33 (1977) 159-174
53. Lerberg S.B., Holland F., and Sanger D.M. Responses of tidal creek macrobenthic communities to the effects of watershed development. Estuaries 23 (2000) 838-853
54. Llansó, R.J., 2002. Methods for Calculating the Chesapeake Bay Benthic Index of Biotic Integrity. http://sci.odu.edu/chesapeakebay/data/benthic/BIBIcalc.pdf.
55. Llansó R.J., Scott L.C., Dauer D.M., Hyland J.L., and Russell D.E. An estuarine benthic index of biotic integrity for the Mid-Atlantic Region of the United States. I. Classification of assemblages and habitat definition. Estuaries 25 6A (2002) 1219-1230
56. Llansó R.J., Scott L.C., Hyland J.L., Dauer D.M., Russell D.E., and Kurtz F.W. An estuarine benthic index of biotic integrity for the Mid-Atlantic Region of the United States. II. Index development. Estuaries 25 6A (2002) 1231-1242
57. Mancinelli G., Fazi S., and Rossi L. Sediment structural properties mediating dominant feeding type's patterns in soft-bottom macrobenthos of the Northern Adriatic Sea. Hydrobiologia 367 1-3 (1998) 211-222
58. Marín-Guirao L., Cesar A., Marín A., Lloret J., and Vita R. Establishing the ecological quality status of soft-bottom mining-impacted coastal water bodies in the scope of the Water Framework Directive. Mar. Pollut. Bull. 50 4 (2005) 374-387
59. Marques J.C., Maranhão P., and Pardal M.A. Human impact assessment on the subtidal macrobenthic community structure in the Mondego estuary (Western Portugal). Estuar. Coast. Shelf Sci. 37 (1993) 403-419
60. Marques J.C., Nielsen S.N., Pardal M.A., and Jørgensen S.E. Impact of eutrophication and river management within a framework of ecosystems theories. Ecol. Model. 166 (2003) 147-168
61. Maurer D., Nguyen H., Robertson G., and Gerlinger T. The infaunal trophic index (ITI): its suitability for marine environment monitoring. Ecol. Appl. 9 2 (1999) 699-713
62. Muniz P., Venturini N., Pires-Vanin A.M.S., Tommasi L.R., and Borja A. Testing the applicability of a marine biotic index (AMBI) to assessing the ecological quality of soft-bottom benthic communities, South America Atlantic region. Mar. Pollut. Bull. 50 (2005) 624-637
63. Muxika I., Borja A., and Bonne W. The suitability of the marine biotic index (AMBI) to new impact sources along European coasts. Ecol. Indicat. 5 (2005) 19-31
64. Muxika I., Borja A., and Bald J. Using historical data, expert judgement and multivariate analysis in assessing reference conditions and benthic ecological status, according to the European Water Framework Directive. Mar. Pollut. Bull. 55 1-6 (2007) 16-29
65. Nilsson H.C., and Rosenberg R. Benthic habitat quality assessment of an oxygen stressed fjord by surface and sediment profile images. J. Mar. Syst. 11 (1997) 249-264
66. Nilsson H.C., and Rosenberg R. Succession in marine benthic habitat and fauna in response to oxygen deficiency: analysed by sediment profile-imaging and by grab samples. Mar. Ecol. Prog. Ser. 197 (2000) 139-149
67. NRC (National Research Council). Ecological Indicators for the Nation (2000), National Academy Press, Washington D.C. 180 pp.
68. O'Connor B.D.S., Costolloe J., Keegan B.F., and Rhoads D.C. The use of REMOTS technology in monitoring coastal enrichment resulting from mariculture. Mar. Pollut. Bull. 20 (1989) 384-390
69. Ott W.R. Environmental Indices, Theory and Practise (1978), Ann Arbour Science, Ann Arbour, MI
70. Patrício J., Ulanowick R., Pardal M.A., and Marques J.C. Ascendancy as an ecological indicator: a case study of estuarine pulse eutrophication. Estuar. Coast. Shelf Sci. 60 (2004) 23-35
71. Paul J.F. Developing and applying an index of environmental integrity for the US Mid-Atlantic region. J. Environ. Manage. 67 (2003) 175-185
72. Paul J.F., Scott K.J., Campbell D.E., Gentile J.H., Strobel C.S., Valente R.M., Weisberg S.B., Holland A.F., and Ranasinghe J.A. Developing and applying a benthic index of estuarine condition for the Virginian biogeographic province. Ecol. Indicat. 1 (2001) 83-99
73. Pearson T.H., and Rosenberg R. Macrobenthic succession in relation to organic enrichment and pollution of the marine environment. Oceanogr. Mar. Biol., Annu. Rev. 16 (1978) 229-311
74. Pereira P., Vale C., Ferreira A.M., Pereira E., Pardal M.A., and Marques J.C. Seasonal variation of surface sediments composition in Mondego River estuary. J. Environ. Sci. Health A40 (2005) 1-13
75. Pinn E.H., and Robertson M.R. Macro-infaunal biodiversity and analysis of associated feeding guilds in the Greater Minch area, Scottish west coast. J. Mar. Biol. Assoc. 83 (2003) 433-443
76. Rakocinski C.F., Brown S.S., Gaston G.R., Heard R.W., Walker W.W., and Summers J.K. Macrobenthic responses to natural and contaminant-related gradients in northern Gulf of Mexico estuaries. Ecol. Appl. 7 (1997) 1278-1298
77. Reiss H., and Kröncke I. Seasonal variability of benthic indices: an approach to test the applicability of different indices for ecosystem quality assessment. Mar. Pollut. Bull. 50 (2005) 1490-1499
78. Rhoads D.C., and Germano J.C. Characterization of organism-sediment relations using sediment profile imaging: an efficient method of remote ecological monitoring of the sea floor (REMOTS™ System). Mar. Ecol. Prog. Ser. 8 (1982) 115-128
79. Rhoads D.C., and Germano J.C. Interpreting long- term changes in benthic community structure: a new protocol. Hydrobiologia 142 (1986) 291-308
80. Roberts R.D., Gregory M.R., and Foster B.A. Developing an efficient macrofauna monitoring index from an impact study-a dredge spoil example. Mar. Pollut. Bull. 36 3 (1998) 231-235
81. Rosenberg R., Blomquist M., Nilsson H.C., Cederwall H., and Dimming A. Marine quality assessment by use of benthic species-abundance distribution: a proposed new protocol within the European Union Water framework Directive. Mar. Pollut. Bull. 49 (2004) 728-739
82. Rygg, B., 2002. Indicator species index for assessing benthic ecological quality in marine waters of Norway. Norwegian Institute for Water Research, Report no. 40114, pp. 1-32.
83. Salas F., Neto J.M., Borga A., and Marques J.C. Evaluation of the applicability of a marine biotic index to characterize the status of estuarine ecosystems: the case of Mondego estuary (Portugal). Ecol. Indicat. 4 (2004) 215-225
84. Salas F., Marcos C., Neto J.M., Patrício J., Pérez-Ruzafa A., and Marques J.C. User-friendly guide for using benthic ecological indicators in coastal and marine quality assessment. Ocean Coast. Manage. 49 (2006) 308-331
85. Schimmel S.C., Benyi S.J., and Strobel C.J. An assessment of the ecological condition of Long Island Sound, 1990-1993. Environ. Monit. Assess. 56 (1999) 27-49
86. Schlacher T.A., and Wooldridge T.H. How sieve mesh size affects sample estimates of estuarine benthic macrofauna. J. Exp. Mar. Biol. Ecol. 201 (1996) 159-171
87. Schroeder, A., 2003. Community dynamics and development of soft bottom macrozoobenthos in the German Bight (North Sea) 1969-2000. PhD Dissertation. Bremen University.
88. Seegert G. The development, use, and misuse of biocriteria with an emphasis on the index of biotic integrity. Environ. Sci. Policy 3 (2000) S51-S58
89. Simboura N., and Zenetos A. Benthic indicators to use in ecological quality classification of Mediterranean soft bottom marine ecosystems, including a new biotic index. Mediterr. Mar. Sci. 3 (2002) 77-111
90. Simboura N., Panayotidis P., and Papathanassiou E. A synthesis of the biological quality elements for the implementation of the European Water Framework Directive in the Mediterranean ecoregion: the case of Saronikos Gulf. Ecol. Indicat. 5 (2005) 253-266
91. Simboura N., Papathanassiou E., and Sakellariou D. The use of a biotic index (Bentix) in assessing long-term effects of dumping coarse metalliferous waste on soft bottom benthic communities. Ecol. Indicat. 7 (2007) 164-180
92. Smith, R.W., Bergen, M., Weisberg, S.B., Cadien, D., Dalkey, A., Montagne, D., Stull, J.K., Velarde, R.G., 1998. Southern California Bight Pilot Project: Benthic Response Index for Assessing Infaunal Communities on the Mainland Shelf of Southern California. Southern California Coastal Water Research Project. http://www.sccwrp.org.
93. Smith R.W., Bergen M., Weisberg S.B., Cadien D., Dankey A., Montagne D., Stull J.K., and Velarde R.G. Benthic response index for assessing infaunal communities on the Mainland Shelf of Southern California. Ecol. Appl. 11 (2001) 1073-1087
94. Strickland J.D.H., and Parsons T.R. A practical handbook of seawater analysis. Bulletin Fisheries Research Board of Canada. 2nd ed. vol. 167 (1972) 311 pp.
95. Teixeira H., Salas F., Borja A., Neto J.M., and Marques J.C. A benthic perspective in assessing the ecological status of estuaries: the case of the Mondego estuary (Portugal). Ecol. Indicat. 8 (2008) 404-416
96. USEPA, 2006. National Coastal Assessment, Northeast website. http://www.epa.gov/emap/nca/html/regions/northeast.html.
97. USEPA, 2007. National Coastal Condition Report III. U.S. Environmental Protection Agency, Washington, DC.
98. Vale, C., Ferreira, A., Caetano, M., Brito, P., 2002. Elemental composition and contaminants in surface sediments of the Mondego river estuary, pp. 541-550. In: Pardal, M.A., Marques, J.C., Graça, M.A. (Eds.), Aquatic Ecology of the Mondego River Basin: Global Importance of Local Experience. Coimbra Imprensa da Universidade, 576 pp.
99. Valente R.M., Rhoads D.C., and Germano J.D. Mapping of benthic enrichment patterns in Narragansett Bay. Rhode Island Estuar. 15 (1992) 1-17
100. Van Dolah R.F., Hyland J.L., Holland A.F., Rosen J.S., and Snoots T.R. A benthic index of biological integrity for assessing habitat quality in estuaries of the south-eastern USA. Mar. Environ. Res. 48 (1999) 269-283
101. WCED (World Commission on Environment Development). Our Common Future (1987), Oxford University Press, Oxford 383 pp.
102. Weisberg S.B., Ranasinghe J.A., Dauer D.M., Schaffner L.C., Díaz R.J., and Frithsen J.B. An estuarine benthic index of biotic integrity (B-IBI) for Chesapeake Bay. Estuaries 20 (1997) 149-158
103. Wildish D.J., Hargrave B.T., MacLeod C., and Crawforl C. Detection of organic enrichment near finfish net-pens by sediment profile imaging at SCUBA-accessible depths. J. Exp. Mar. Biol. Ecol. 285/286 (2003) 403-413
104. Wilson J.G. Evaluation of estuarine quality status at system level using the biological quality index and the pollution load index. Biol. Environ.: Proc. R. Irish Acad. 103B 2 (2003) 49-57
105. Word, J.Q., 1978. The infaunal trophic index. Coastal Water Research Project Annual Report, Southern California Coastal Water Research Project, El Segundo, CA, pp. 19-39.
106. Word, J.Q., 1980. Classification of benthic invertebrates into infaunal trophic index feeding groups. Biennial Report, 1979-80, Coastal Water Research Project, Los Angeles, pp. 103-121.
107. Word J.Q., 1990. The infaunal trophic index, a functional approach to benthic community analyses. PhD Dissertation. University of Washington, Seattle, Washington, USA.
108. Zenetos A., Chadjianestis I., Lantzouni M., Simboura M., Sklivagou E., and Arvanitakis G. The Eurobulker oil spill: midterm changes of some ecosystem indicators. Mar. Pollut. Bull. 48 1/2 (2004) 121-131
109. Zettler M.L., Schiedek D., and Bobertz B. Benthic biodiversity indices versus salinity gradient in the southern Baltic Sea. Mar. Pollut. Bull. 55 (2007) 258-270