Induced stepwise conformational change of human serum albumin on carbon nanotube surfaces

Biomaterials

Volumn 29, Issue 28, 2008, Pages 3847-3855

  Shen, Jia Wei ^a   Wu, Tao ^a   Wang, Qi ^a   Kang, Yu ^a  

^a ZHEJIANG UNIVERSITY   (China)

Author keywords

Carbon nanotube; Human serum albumin; Protein adsorption; Protein surface interaction; Stepwise conformational change

Indexed keywords

ADSORPTION; BODY FLUIDS; CARBON; DYNAMICS; FLOW INTERACTIONS; MODEL STRUCTURES; MOLECULAR DYNAMICS; MOLECULAR MECHANICS; MOLECULES; NANOCOMPOSITES; NANOPORES; NANOSTRUCTURED MATERIALS; NANOSTRUCTURES; NANOTECHNOLOGY; NANOTUBES; OPTICAL DESIGN; QUANTUM CHEMISTRY;

(1 1 1) ORIENTATION; (111) TEXTURE; (PL) PROPERTIES; ADSORPTION DYNAMICS; ADSORPTION PROCESSES; BIOLOGICAL ACTIVITIES; CARBON NANOTUBE SURFACES; CONFORMATIONAL CHANGES; COVALENT ADSORPTION; ELSEVIER (CO); HUMAN SERUM ALBUMIN (HSA); INTERACTION CURVE; MOLECULAR LEVELS; MOLECULAR-DYNAMICS (MD) SIMULATIONS; NANO STRUCTURE FABRICATION; POTENTIAL APPLICATIONS; PROTEIN-SURFACE INTERACTIONS; RANDOM COILS; SECONDARY STRUCTURES (SS); STEPWISE ADSORPTION; SUB DOMAINS; TERTIARY STRUCTURES;

CARBON NANOTUBES;

CARBON NANOTUBE; HUMAN SERUM ALBUMIN;

ADSORPTION; ARTICLE; BIOLOGICAL ACTIVITY; CONFORMATIONAL TRANSITION; MOLECULAR DYNAMICS; PRIORITY JOURNAL; PROTEIN INTERACTION; PROTEIN STRUCTURE;

ADSORPTION; AMINO ACID SEQUENCE; COATED MATERIALS, BIOCOMPATIBLE; COMPUTER SIMULATION; HUMANS; MATERIALS TESTING; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NANOTUBES, CARBON; PROTEIN CONFORMATION; SERUM ALBUMIN; SURFACE PROPERTIES;

EID: 47849126897     PISSN: 01429612     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.biomaterials.2008.06.013     Document Type: Article

References (51)

1. Iijima S. Helical microtubules of graphitic carbon. Nature 354 (1991) 56-58
2. Guldi D.M., Rahman G.M.A., Sgobba V., and Ehli C. Multifunctional molecular carbon materials - from fullerenes to carbon nanotubes. Chem Soc Rev 35 (2006) 471-487
3. Goldberger J., Fan R., and Yang P.D. Inorganic nanotubes: a novel platform for nanofluidics. Acc Chem Res 39 (2006) 239-248
4. Chen R.J., Bangsaruntip S., Drouvalakis K.A., Kam N.W.S., Shim M., Li Y.M., et al. Noncovalent functionalization of carbon nanotubes for highly specific electronic biosensors. Proc Natl Acad Sci U S A 100 (2003) 4984-4989
5. Zhang Y.-B., Kanungo M., Ho A.J., Freimuth P., van der Lelie D., Chen M., et al. Functionalized carbon nanotubes for detecting viral proteins. Nano Lett 7 (2007) 3086-3091
6. Baughman R.H., Cui C.X., Zakhidov A.A., Iqbal Z., Barisci J.N., Spinks G.M., et al. Carbon nanotube actuators. Science 284 (1999) 1340-1344
7. Kam N.W.S., Jessop T.C., Wender P.A., and Dai H. Nanotube molecular transporters: internalization of carbon nanotube-protein conjugates into mammalian cells. J Am Chem Soc 126 (2004) 6850-6851
8. Kam N.W.S., Liu Z., and Dai H. Functionalization of carbon nanotubes via cleavable disulfide bonds for efficient intracellular delivery of siRNA and potent gene silencing. J Am Chem Soc 127 (2005) 12492-12493
9. Zhao W., Song C., and Pehrsson P.E. Water-soluble and optically pH-sensitive single-walled carbon nanotubes from surface modification. J Am Chem Soc 124 (2002) 12418-12419
10. Hirsch A. Functionalization of single-walled carbon nanotubes. Angew Chem Int Ed Engl 41 (2002) 1853-1859
11. Georgakilas V., Kordatos K., Prato M., Guldi D.M., Holzinger M., and Hirsch A. Organic functionalization of carbon nanotubes. J Am Chem Soc 124 (2002) 760-761
12. Boul P.J., Liu J., Mickelson E.T., Huffman C.B., Ericson L.M., Chiang I.W., et al. Reversible sidewall functionalization of buckytubes. Chem Phys Lett 310 (1999) 367-372
13. Liu Y.C., Shen J.W., Gubbins K.E., Moore J.D., Wu T., and Wang Q. Diffusion dynamics of water controlled by topology of potential energy surface inside carbon nanotubes. Phys Rev B 77 (2008) 125438
14. Liu Y.C., and Wang Q. Dynamic behaviors on zadaxin getting into carbon nanotubes. J Chem Phys 126 (2007) 124901
15. Kang Y., Wang Q., Liu Y.C., Wu T., Chen Q., and Guan W.J. Dynamic mechanism of collagen-like peptide encapsulated into carbon nanotubes. J Phys Chem B 112 (2008) 4801-4807
16. Davis J.J., Green M.L.H., Hill H.A.O., Leung Y.C., Sadler P.J., Sloan J., et al. The immobilisation of proteins in carbon nanotubes. Inorg Chim Acta 272 (1997) 261-266
17. Karajanagi S.S., Yang H., Asuri P., Sellitto E., Dordick J.S., and Kane R.S. Protein-assisted solubilization of single-walled carbon nanotubes. Langmuir 22 (2006) 1392-1395
18. Kurppa K., Jiang H., Szilvay G.R., Nasibulin A.G., Kauppinen E.I., and Linder M.B. Controlled hybrid nanostructures through protein-mediated noncovalent functionalization of carbon nanotubes. Angew Chem Int Ed Engl 46 (2007) 6446-6449
19. Kam N.W.S., and Dai H. Carbon nanotubes as intracellular protein transporters: generality and biological functionality. J Am Chem Soc 127 (2005) 6021-6026
20. Wang S.Q., Humphreys E.S., Chung S.-Y., Delduco D.F., Lustig S.R., Wang H., et al. Peptide with selective affinity for carbon nanotubes. Nat Mater 2 (2003) 196-200
21. Witus L.S., Rocha J.-D.R., Yuwono V.M., Paramonov S.E., Weisman R.B., and Hartgerink J.D. Peptides that non-covalently functionalize single-walled carbon nanotubes to give controlled solubility characteristics. J Mater Chem 17 (2007) 1909-1915
22. Karajanagi S.S., Vertegel A.A., Kane R.S., and Dordick J.S. Structure and function of enzymes adsorbed onto single-walled carbon nanotubes. Langmuir 20 (2004) 11594-11599
23. Su Z.D., Leung T., and Honek J.F. Conformational selectivity of peptides for single-walled carbon nanotubes. J Phys Chem B 110 (2006) 23623-23627
24. Agashe M., Raut V., Stuart S.J., and Latour R.A. Molecular simulation to characterize the adsorption behavior of a fibrinogen γ-chain fragment. Langmuir 21 (2005) 1103-1117
25. Raffaini G., and Ganazzoli F. Surface ordering of proteins adsorbed on graphite. J Phys Chem B 108 (2004) 13850-13854
26. Cormack A.N., Lewis R.J., and Goldstein A.H. Computer simulation of protein adsorption to a material surface in aqueous solution: biomaterials modeling of a ternary system. J Phys Chem B 108 (2004) 20408-20418
27. - claws. J Phys Chem C 111 (2007) 1284-1290
28. Dong X.L., Wang Q., Wu T., and Pan H.H. Understanding adsorption-desorption dynamics of BMP-2 on hydroxyapatite (001) surface. Biophys J 93 (2007) 750-759
29. Zhou H.L., Wu T., Dong X.L., Wang Q., and Shen J.W. Adsorption mechanism of BMP-7 on hydroxyapatite (001) surfaces. Biochem Biophys Res Commun 361 (2007) 91-96
30. Shen J.W., Wu T., Wang Q., and Pan H.H. Molecular simulation of protein adsorption and desorption on hydroxyapatite surfaces. Biomaterials 29 (2008) 513-532
31. Chen X., Wu T., Wang Q., and Shen J.W. Shield effect of silicate on adsorption of protein onto silicon-doped hydroxyapatite (100) surface. Biomaterials 29 (2008) 2423-2432
32. Phillips J.C., Braun R., Wang W., Gumbart J., Tajkhorshid E., Villa E., et al. Scalable molecular dynamics with NAMD. J Comput Chem 26 (2005) 1781-1802
33. MacKerell Jr. A.D., Bashford D., Bellott M., Dunbrack Jr. R.L., Evanseck J.D., Field M.J., et al. All-atom empirical potential for molecular modeling and dynamics studies of proteins. J Phys Chem B 102 (1998) 3586-3616
34. Walther J.H., Jaffe R., Halicioglu T., and Koumoutsakos P. Carbon nanotubes in water: structural characteristics and energetics. J Phys Chem B 105 (2001) 9980-9987
35. Gao H.J., and Kong Y. Simulation of DNA-nanotube interactions. Annu Rev Mater Res 34 (2004) 123-150
36. Ravichandran S., Madura J.D., and Talbot J. A Brownian dynamics study of the initial stages of hen egg-white lysozyme adsorption at a solid interface. J Phys Chem B 105 (2001) 3610-3613
37. Humphrey W., Dalke A., and Schulten K. VMD: visual molecular dynamics. J Mol Graphics 14 (1996) 33-38
38. Zielkiewicz J. Structural properties of water: comparison of the SPC, SPCE, TIP4P, and TIP5P models of water. J Chem Phys 123 (2005) 104501
39. Jorgensen W.L., Chandrasekhar J., and Madura J.D. Comparison of simple potential functions for simulating liquid water. J Chem Phys 79 (1983) 926-935
40. Höchtl P., Boresch S., Bitomsky W., and Steinhauser O. Rationalization of the dielectric properties of common three-site water models in terms of their force field parameters. J Chem Phys 109 (1998) 4927-4937
41. Valenti L.E., Fiorito P.A., García C.D., and Giacomelli C.E. The adsorption-desorption process of bovine serum albumin on carbon nanotubes. J Colloid Interface Sci 307 (2007) 349-356
42. Matsuura K., Saito T., Okazaki T., Ohshima S., Yumura M., and Iijima S. Selectivity of water-soluble proteins in single-walled carbon nanotube dispersions. Chem Phys Lett 429 (2006) 497-502
43. 60-fullerene and a native blood protein. ChemBioChem 7 (2006) 1783-1789
44. Raffaini G., and Ganazzoli F. Molecular dynamics simulation of the adsorption of a fibronectin module on a graphite surface. Langmuir 20 (2004) 3371-3378
45. Gao H.J., Kong Y., and Cui D.X. Spontaneous insertion of DNA oligonucleotides into carbon nanotubes. Nano Lett 3 (2003) 471-473
46. Yang M.J., Koutsos V., and Zaiser M. Interactions between polymers and carbon nanotubes: a molecular dynamics study. J Phys Chem B 109 (2005) 10009-10014
47. Snow E.S., Perkins F.K., Houser E.J., Badescu S.C., and Reinecke T.L. Chemical detection with a single-walled carbon nanotube capacitor. Science 307 (2005) 1942-1945
48. Woods L.M., Badescu S.C., and Reinecke T.L. Adsorption of simple benzene derivatives on carbon nanotubes. Phys Rev B 75 (2007) 155415
49. Chen R.J., Zhan Y.G., Wang D.W., and Dai H.J. Noncovalent sidewall functionalization of single-walled carbon nanotubes for protein immobilization. J Am Chem Soc 123 (2001) 3838-3839
50. Roach P., Farrar D., and Perry C.C. Surface tailoring for controlled protein adsorption: effect of topography at the nanometer scale and chemistry. J Am Chem Soc 128 (2006) 3939-3945
51. Dutta D., Sundaram S.K., Teeguarden J.G., Joseph B., Fifield L.S., and Jacobs J.M. Adsorbed proteins influence the biological activity and molecular targeting of nanomaterials. Toxicol Sci 100 (2007) 303-315