Variation of geometrical and physicochemical properties in protein binding pockets and their ligands

BMC Bioinformatics

Volumn 8, Issue SUPPL. 8, 2007, Pages

  Kahraman, Abdullah ^a   Morris, Richard J ^b   Laskowski, Roman A ^a   Thornton, Janet M ^a  

^a EUROPEAN BIOINFORMATICS INSTITUTE   (United Kingdom)

^b JOHN INNES CENTRE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

PHYSICOCHEMICAL PROPERTY; PROTEIN BINDING;

BIOCHEMISTRY;

LIGAND; PROTEIN;

ALGORITHM; BINDING SITE; CONFERENCE PAPER; GEOMETRY; HYDROPHOBICITY; LIGAND BINDING; PHYSICAL CHEMISTRY; PROTEIN BINDING; PROTEIN DETERMINATION; PROTEIN VARIANT; SIMULATION;

EID: 47649087869     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-8-S8-S1     Document Type: Conference Paper

References (4)

1. Livesay DR Jambeck P Rojnuckarin A Subramaniam S Conservation of electrostatic properties within enzyme families and superfamilies Biochemistry 2003 42 12 3464-3473 10.1021/bi026918f 12653550
2. Kahraman A Morris RJ Laskowski RA Thornton JM Shape variation in protein binding pockets and their ligands J Mol Biol 2007 368 283-301 10.1016/ j.jmb.2007.01.086 17337005
3. Berman HM Westbrook J Feng Z Gilliland G Bhat TN Weissig H Shindyalov IN Bourne PE The Protein Data Bank Nucleic Acids Res 2000 28 235-242 102472 10592235 10.1093/nar/28.1.235
4. Conti E Stachelhaus T Marahiel MA Brick P Structural basis for the activation of phenylalanine in the non-ribosomal biosynthesis of gramicidin S Embo J 1997 16 4174-4183 1170043 9250661 10.1093/emboj/ 16.14.4174