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Volumn 54, Issue 1, 2004, Pages 198-211

RNase HI overproduction is required for efficient full-length RNA synthesis in the absence of topoisomerase I in Escherichia coli

Author keywords

[No Author keywords available]

Indexed keywords

DNA TOPOISOMERASE; DNA TOPOISOMERASE (ATP HYDROLYSING); MESSENGER RNA; RIBONUCLEASE H;

EID: 4744343661     PISSN: 0950382X     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-2958.2004.04258.x     Document Type: Article
Times cited : (34)

References (40)
  • 1
    • 0017868340 scopus 로고
    • Control of transcription termination
    • Adhya, S., and Gottesman, M. (1978) Control of transcription termination. Annu Rev Biochem 47: 967-996.
    • (1978) Annu Rev Biochem , vol.47 , pp. 967-996
    • Adhya, S.1    Gottesman, M.2
  • 2
    • 0014371028 scopus 로고
    • The nature of mutants in the lac promoter region
    • Arditti, R.R., Scaife, J.G., and Beckwith, J.R. (1968) The nature of mutants in the lac promoter region. J Mol Biol 38: 421-426.
    • (1968) J Mol Biol , vol.38 , pp. 421-426
    • Arditti, R.R.1    Scaife, J.G.2    Beckwith, J.R.3
  • 3
    • 0026620949 scopus 로고
    • Dramatic changes in Fis levels upon nutrient upshift in Escherichia coli
    • Ball, C.A., Osuna, R., Ferguson, K.C., and Johnson, R.C. (1992) Dramatic changes in Fis levels upon nutrient upshift in Escherichia coli. J Bacteriol 174: 8043-8056.
    • (1992) J Bacteriol , vol.174 , pp. 8043-8056
    • Ball, C.A.1    Osuna, R.2    Ferguson, K.C.3    Johnson, R.C.4
  • 5
    • 0034923502 scopus 로고    scopus 로고
    • DNA topoisomerases: Structure, function, and mechanism
    • Champoux, J.J. (2001) DNA topoisomerases: structure, function, and mechanism. Annu Rev Biochem 70: 369-413.
    • (2001) Annu Rev Biochem , vol.70 , pp. 369-413
    • Champoux, J.J.1
  • 6
    • 0035075387 scopus 로고    scopus 로고
    • Revisiting the stringent response, ppGpp and starvation signaling
    • Chatterji, D., and Ojha, A.K. (2001) Revisiting the stringent response, ppGpp and starvation signaling. Curr Opin Microbiol 4:160-165.
    • (2001) Curr Opin Microbiol , vol.4 , pp. 160-165
    • Chatterji, D.1    Ojha, A.K.2
  • 7
    • 0142062412 scopus 로고    scopus 로고
    • RNase H overproduction allows the expression of stress-induced genes in the absence of topoisomerase I
    • Cheng, B., Rui, S., Ji, C., Gong, V.W., Van Dyk, T.K., Drolet, M., and Tse-Dinh, Y.C. (2003a) RNase H overproduction allows the expression of stress-induced genes in the absence of topoisomerase I. FEMS Microbiol Lett 221: 237-242.
    • (2003) FEMS Microbiol Lett , vol.221 , pp. 237-242
    • Cheng, B.1    Rui, S.2    Ji, C.3    Gong, V.W.4    Van Dyk, T.K.5    Drolet, M.6    Tse-Dinh, Y.C.7
  • 8
    • 0042733395 scopus 로고    scopus 로고
    • Direct interaction between E. coli RNA polymerase and the zinc ribbon domains of DNA topoisomerase I
    • Cheng, B., Zhu, C.X., Ji, C., Ahumada, A., and Tse-Dinh, Y.C. (2003b) Direct interaction between E. coli RNA polymerase and the zinc ribbon domains of DNA topoisomerase I. J Biol Chem 278: 30705-30710.
    • (2003) J Biol Chem , vol.278 , pp. 30705-30710
    • Cheng, B.1    Zhu, C.X.2    Ji, C.3    Ahumada, A.4    Tse-Dinh, Y.C.5
  • 9
    • 0020426677 scopus 로고
    • Escherichia coli DNA topoisomerase I mutants have compensatory mutations in DNA gyrase genes
    • DiNardo, S., Voelkel, K.A., Sternglanz, R., Reynolds, A.E., and Wright, A. (1982) Escherichia coli DNA topoisomerase I mutants have compensatory mutations in DNA gyrase genes. Cell 31: 43-51.
    • (1982) Cell , vol.31 , pp. 43-51
    • DiNardo, S.1    Voelkel, K.A.2    Sternglanz, R.3    Reynolds, A.E.4    Wright, A.5
  • 10
    • 0003395950 scopus 로고
    • Polynucleotide phosphorylase and ribonuclease II are required for cell viability and mRNA turnover in Escherichia coli K12
    • Donovan, W.P., and Kushner, S.R. (1986) Polynucleotide phosphorylase and ribonuclease II are required for cell viability and mRNA turnover in Escherichia coli K12. Proc Natl Acad Sci USA 83: 120-124.
    • (1986) Proc Natl Acad Sci USA , vol.83 , pp. 120-124
    • Donovan, W.P.1    Kushner, S.R.2
  • 11
    • 0028966185 scopus 로고
    • Overexpression of RNase H partially complements the growth defect of an Escherichia coli delta topA mutant: R-loop formation is a major problem in the absence of DNA topoisomerase I
    • Drolet, M., Phoenix, P., Menzel, R., Massé, E., Liu, L.F., and Crouch, R.J. (1995) Overexpression of RNase H partially complements the growth defect of an Escherichia coli delta topA mutant: R-loop formation is a major problem in the absence of DNA topoisomerase I. Proc Natl Acad Sci USA 92: 3526-3530.
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 3526-3530
    • Drolet, M.1    Phoenix, P.2    Menzel, R.3    Massé, E.4    Liu, L.F.5    Crouch, R.J.6
  • 13
    • 0037582107 scopus 로고    scopus 로고
    • Regulation of crp transcription by oscillation between distinct nucleoprotein complexes
    • Gonzalez-Gil, G., Kahmann, R., and Muskhelishvili, G. (1998) Regulation of crp transcription by oscillation between distinct nucleoprotein complexes. EMBO J 17: 2877-2885.
    • (1998) EMBO J , vol.17 , pp. 2877-2885
    • Gonzalez-Gil, G.1    Kahmann, R.2    Muskhelishvili, G.3
  • 14
    • 0033538419 scopus 로고    scopus 로고
    • Characterization of structural features important for T7 RNAP elongation complex stability reveals competing complex conformations and a role for the non-template strand in RNA displacement
    • Gopal, V., Brieba, L.G., Guajardo, R., McAllister, W.T. and Sousa, R. (1999) Characterization of structural features important for T7 RNAP elongation complex stability reveals competing complex conformations and a role for the non-template strand in RNA displacement. J Mol Sci 290: 411-431.
    • (1999) J Mol Sci , vol.290 , pp. 411-431
    • Gopal, V.1    Brieba, L.G.2    Guajardo, R.3    McAllister, W.T.4    Sousa, R.5
  • 15
    • 0034646628 scopus 로고    scopus 로고
    • RNase H overproduction corrects a defect at the level of transcription elongation during rRNA synthesis in the absence of DNA topoisomerase I in Escherichia coli
    • Hraiky, C., Raymond, M.A., and Drolet, M. (2000) RNase H overproduction corrects a defect at the level of transcription elongation during rRNA synthesis in the absence of DNA topoisomerase I in Escherichia coli. J Biol Chem 275: 11257-11263.
    • (2000) J Biol Chem , vol.275 , pp. 11257-11263
    • Hraiky, C.1    Raymond, M.A.2    Drolet, M.3
  • 16
    • 0141819093 scopus 로고    scopus 로고
    • Cotranscriptionally formed DNA: RNA hybrids mediate transcription elongation impairment and transcription-associated recombination
    • Huertas, P., and Aguilera, A. (2003) Cotranscriptionally formed DNA: RNA hybrids mediate transcription elongation impairment and transcription-associated recombination. Mol Cell 12: 711-721.
    • (2003) Mol Cell , vol.12 , pp. 711-721
    • Huertas, P.1    Aguilera, A.2
  • 17
    • 0033613914 scopus 로고    scopus 로고
    • Degradation of FinP antisense RNA from F-like plasmids: The RNA-binding protein, FinO, protects FinP from ribonuclease E
    • Jerome, L.J., van Biesen, T., and Frost, L.S. (1999) Degradation of FinP antisense RNA from F-like plasmids: the RNA-binding protein, FinO, protects FinP from ribonuclease E. J Mol Biol 285: 1457-1473.
    • (1999) J Mol Biol , vol.285 , pp. 1457-1473
    • Jerome, L.J.1    Van Biesen, T.2    Frost, L.S.3
  • 18
    • 0023433855 scopus 로고
    • Supercoiling of the DNA template during transcription
    • Liu, L.F., and Wang, J.C. (1987) Supercoiling of the DNA template during transcription. Proc Natl Acad Sci USA 84: 7024-7027.
    • (1987) Proc Natl Acad Sci USA , vol.84 , pp. 7024-7027
    • Liu, L.F.1    Wang, J.C.2
  • 19
    • 0032568544 scopus 로고    scopus 로고
    • Translation inhibitors stabilize Escherichia coli mRNAs independently of ribosome protection
    • Lopez, P.J., Marchand, I., Yarchuk, O., and Dreyfus, M. (1998) Translation inhibitors stabilize Escherichia coli mRNAs independently of ribosome protection. Proc Natl Acad Sci USA 95: 6067-6072.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 6067-6072
    • Lopez, P.J.1    Marchand, I.2    Yarchuk, O.3    Dreyfus, M.4
  • 20
    • 0033523016 scopus 로고    scopus 로고
    • Relaxation of transcription-induced negative supercoiling is an essential function of Escherichia coli DNA topoisomerase I
    • Massé, E., and Drolet, M. (1999a) Relaxation of transcription-induced negative supercoiling is an essential function of Escherichia coli DNA topoisomerase I. J Biol Chem 274: 16654-16658.
    • (1999) J Biol Chem , vol.274 , pp. 16654-16658
    • Massé, E.1    Drolet, M.2
  • 21
    • 0033522905 scopus 로고    scopus 로고
    • Escherichia coli DNA topoisomerase I inhibits R-loop formation by relaxing transcription-induced negative supercoiling
    • Massé, E., and Drolet, M. (1999b) Escherichia coli DNA topoisomerase I inhibits R-loop formation by relaxing transcription-induced negative supercoiling. J Biol Chem 274: 16659-16664.
    • (1999) J Biol Chem , vol.274 , pp. 16659-16664
    • Massé, E.1    Drolet, M.2
  • 22
    • 0033607485 scopus 로고    scopus 로고
    • R-loop-dependent hypernegative supercoiling in Escherichia coli topA mutants preferentially occurs at low temperatures and correlates with growth inhibition
    • Massé, E. and Drolet, M. (1999c) R-loop-dependent hypernegative supercoiling in Escherichia coli topA mutants preferentially occurs at low temperatures and correlates with growth inhibition. J Mol Biol 294: 321-332.
    • (1999) J Mol Biol , vol.294 , pp. 321-332
    • Massé, E.1    Drolet, M.2
  • 23
    • 0030995436 scopus 로고    scopus 로고
    • DNA topoisomerases regulate R-loop formation during transcription of the rrnB operon in Escherichia coli
    • Massé, E., Phoenix, P., and Drolet, M. (1997) DNA topoisomerases regulate R-loop formation during transcription of the rrnB operon in Escherichia coli. J Biol Chem 272: 12816-12823.
    • (1997) J Biol Chem , vol.272 , pp. 12816-12823
    • Massé, E.1    Phoenix, P.2    Drolet, M.3
  • 24
    • 0003842951 scopus 로고
    • Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press
    • Miller, J.H. (1992) A Short Course in Bacterial Genetics. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press.
    • (1992) A Short Course in Bacterial Genetics
    • Miller, J.H.1
  • 25
    • 0035947613 scopus 로고    scopus 로고
    • CRP modulates fis transcription by alternate formation of activating and repressing nucleoprotein complexes
    • Nasser, W., Schneider, R., Travers, A., and Muskhelishvili, G. (2001) CRP modulates fis transcription by alternate formation of activating and repressing nucleoprotein complexes. J Biol Chem 276: 17878-17886.
    • (2001) J Biol Chem , vol.276 , pp. 17878-17886
    • Nasser, W.1    Schneider, R.2    Travers, A.3    Muskhelishvili, G.4
  • 27
    • 0026569267 scopus 로고
    • The E. coli fis promoter is subject to stringent control and autoregulation
    • Ninnemann, O., Koch, C., and Kahmann, R. (1992) The E. coli fis promoter is subject to stringent control and autoregulation. EMBO J 11: 1075-1083.
    • (1992) EMBO J , vol.11 , pp. 1075-1083
    • Ninnemann, O.1    Koch, C.2    Kahmann, R.3
  • 28
    • 0021344444 scopus 로고
    • RNase H confers specificity in the dnaA-dependent initiation of replication at the unique origin of the Escherichia coli chromosome in vivo and in vitro
    • Ogawa, T., Pickett, G.G., Kogoma, T., and Kornberg, A. (1984) RNase H confers specificity in the dnaA-dependent initiation of replication at the unique origin of the Escherichia coli chromosome in vivo and in vitro. Proc Natl Acad Sci USA 81: 1040-1044.
    • (1984) Proc Natl Acad Sci USA , vol.81 , pp. 1040-1044
    • Ogawa, T.1    Pickett, G.G.2    Kogoma, T.3    Kornberg, A.4
  • 29
    • 0031028203 scopus 로고    scopus 로고
    • Roles of DNA topoisomerases in the regulation of R-loop formation in vitro
    • Phoenix, P., Raymond, M.A., Massé, E., and Drolet, M. (1997) Roles of DNA topoisomerases in the regulation of R-loop formation in vitro. J Biol Chem 272: 1473-1479.
    • (1997) J Biol Chem , vol.272 , pp. 1473-1479
    • Phoenix, P.1    Raymond, M.A.2    Massé, E.3    Drolet, M.4
  • 30
    • 0020426111 scopus 로고
    • Escherichia coli DNA topoisomerase I mutants: Increased supercoiling is corrected by mutations near gyrase genes
    • Pruss, G.J., Manes, S.H., and Drlica, K. (1982) Escherichia coli DNA topoisomerase I mutants: increased supercoiling is corrected by mutations near gyrase genes. Cell 31:35-42.
    • (1982) Cell , vol.31 , pp. 35-42
    • Pruss, G.J.1    Manes, S.H.2    Drlica, K.3
  • 31
    • 9444291891 scopus 로고    scopus 로고
    • Effect of the deletion of the sigma 32-dependent promoter (P1) of the Escherichia coli topoisomerase I gene on thermotolerance
    • Qi, H., Menzel, R., and Tse-Dinh, Y.C. (1996) Effect of the deletion of the sigma 32-dependent promoter (P1) of the Escherichia coli topoisomerase I gene on thermotolerance. Mol Microbiol 21: 703-711.
    • (1996) Mol Microbiol , vol.21 , pp. 703-711
    • Qi, H.1    Menzel, R.2    Tse-Dinh, Y.C.3
  • 32
    • 0033814887 scopus 로고    scopus 로고
    • The expression of the Escherichia coli fis gene is strongly dependent on the superhelical density of DNA
    • Schneider, R., Travers, A., and Muskhelishvili, G. (2000) The expression of the Escherichia coli fis gene is strongly dependent on the superhelical density of DNA. Mol Microbiol 38: 167-175.
    • (2000) Mol Microbiol , vol.38 , pp. 167-175
    • Schneider, R.1    Travers, A.2    Muskhelishvili, G.3
  • 33
    • 0035970285 scopus 로고    scopus 로고
    • Charging levels of four tRNA species in Escherichia coli Rel(+) and Rel(-) strains during amino acid starvation: A simple model for the effect of ppGpp on translational accuracy
    • Sorensen, M.A. (2001) Charging levels of four tRNA species in Escherichia coli Rel(+) and Rel(-) strains during amino acid starvation: a simple model for the effect of ppGpp on translational accuracy. J Mol Biol 307: 785-798.
    • (2001) J Mol Biol , vol.307 , pp. 785-798
    • Sorensen, M.A.1
  • 34
    • 0028220191 scopus 로고
    • High concentrations of ppGpp decrease the RNA chain growth rate. Implications for protein synthesis and translational fidelity during amino acid starvation in Escherichia coli
    • Sorensen, M.A., Jensen, K.F., and Pedersen, S. (1994) High concentrations of ppGpp decrease the RNA chain growth rate. Implications for protein synthesis and translational fidelity during amino acid starvation in Escherichia coli. J Mol Biol 236: 441-454.
    • (1994) J Mol Biol , vol.236 , pp. 441-454
    • Sorensen, M.A.1    Jensen, K.F.2    Pedersen, S.3
  • 35
    • 0021233262 scopus 로고
    • Bacterial chromosome segregation: Evidence for DNA gyrase involvement in decatenation
    • Steck, T.R., and Drlica, K. (1984) Bacterial chromosome segregation: evidence for DNA gyrase involvement in decatenation. Cell 36: 1081-1088.
    • (1984) Cell , vol.36 , pp. 1081-1088
    • Steck, T.R.1    Drlica, K.2
  • 36
    • 0027410057 scopus 로고
    • Guanosine tetraphosphate inhibits protein synthesis in vivo. A possible protective mechanism for starvation stress in Escherichia coli
    • Svitil, A.L., Cashel, M., and Zyskind, J.W. (1993) Guanosine tetraphosphate inhibits protein synthesis in vivo. A possible protective mechanism for starvation stress in Escherichia coli. J Biol Chem 268: 2307-2311.
    • (1993) J Biol Chem , vol.268 , pp. 2307-2311
    • Svitil, A.L.1    Cashel, M.2    Zyskind, J.W.3
  • 37
    • 0033966498 scopus 로고    scopus 로고
    • Increased sensitivity to oxidative challenges associated with topA deletion in Escherichia coli
    • Tse-Dinh, Y.C. (2000) Increased sensitivity to oxidative challenges associated with topA deletion in Escherichia coli. J Bacteriol 182: 829-832.
    • (2000) J Bacteriol , vol.182 , pp. 829-832
    • Tse-Dinh, Y.C.1
  • 38
    • 0036719293 scopus 로고    scopus 로고
    • Factors affecting start site selection at the Escherichia coli fis promoter
    • Walker, K.A., and Osuna, R. (2002) Factors affecting start site selection at the Escherichia coli fis promoter. J Bacteriol 184: 4783-4791.
    • (2002) J Bacteriol , vol.184 , pp. 4783-4791
    • Walker, K.A.1    Osuna, R.2
  • 39
    • 0030014783 scopus 로고    scopus 로고
    • DNA topoisomerases
    • Wang, J.C. (1996) DNA topoisomerases. Annu Rev Biochem 65: 635-692.
    • (1996) Annu Rev Biochem , vol.65 , pp. 635-692
    • Wang, J.C.1
  • 40
    • 0034625237 scopus 로고    scopus 로고
    • 6S RNA regulates E. coli RNA polymerase activity
    • Wassarman, K.M., and Storz, G. (2000) 6S RNA regulates E. coli RNA polymerase activity. Cell 101: 613-623.
    • (2000) Cell , vol.101 , pp. 613-623
    • Wassarman, K.M.1    Storz, G.2


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