Sequence, evolution and tissue expression patterns of an epidermal type 1 keratin from the shark Scyliorhinus stellaris

European Journal of Cell Biology

Volumn 83, Issue 7, 2004, Pages 359-368

  Schaffeld, Michael ^a   Höffling, Simon ^a   Markl, Jürgen ^a  

^a JOHANNES GUTENBERG UNIVERSITY   (Germany)

Author keywords

Evolution; Intermediate filaments; Keratin; Shark; Trout; Vertebrates; Zebrafish

Indexed keywords

CYTOSKELETON PROTEIN; KERATIN; KERATIN ANTIBODY; MONOCLONAL ANTIBODY; POLYACRYLAMIDE GEL;

AMINO ACID SEQUENCE; ANIMAL TISSUE; ARTICLE; CONTROLLED STUDY; CYTOSKELETON; DNA FINGERPRINTING; DNA SEQUENCE; EPIDERMIS; EPITHELIUM; FISH; FROZEN SECTION; GENETIC CODE; IMMUNOBLOTTING; IMMUNODETECTION; IMMUNOFLUORESCENCE MICROSCOPY; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; ORTHOLOGY; PHYLOGENETIC TREE; PRIORITY JOURNAL; PROTEIN EXPRESSION; SEPARATION TECHNIQUE; SHARK; TELEOST; THELAZIA; VERTEBRATE;

ANIMALIA; CHONDRICHTHYES; DANIO RERIO; EUKARYOTA; PETROMYZONTIDAE; PISCES; SALMONIDAE; SCYLIORHINUS; SCYLIORHINUS STELLARIS; TELEOSTEI; TETRAPODA; THELAZIA; VERTEBRATA;

EID: 4744341366     PISSN: 01719335     EISSN: None     Source Type: Journal    
DOI: 10.1078/0171-9335-00395     Document Type: Article

References (40)

1. Altschul, S. F., Gish, W., Miller, W., Myers, E. W., Lipman, D. J., 1990. Basic local alignment search tool. J. Mol. Biol. 215, 403-410.
2. Arnason, U., Gullberg, A., Janke, A., 2001. Molecular phylogenetics of gnathostomous (jawed) fishes: old bones, new cartilage. Zool. Scripta 30, 249-255.
3. Chirgwin, J. M., Przybyla, A. E., MacDonald, R. J., Rutter, W. J., 1979. Isolation of biologically active ribonucleic acid from sources enriched in ribonuclease. Biochemistry 18, 5294-5299.
4. Conrad, M., Lemb, K., Schubert, T., Markl, J., 1998. Biochemical identification and tissue-specific expression patterns of keratins in the zebrafish Danio rerio. Cell Tissue Res. 293, 195-205.
5. Felsenstein, J., 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
6. Felsenstein, J., 2000. PHYLIP (phylogeny inference package). Version 3.6 alpha. Distributed by the author, Department of Genetics, University of Washington, Seattle.
7. Fishelson, L., Baranes, A., 1997. Ontogenesis and cytomorphology of the nasal olfactory organs in the Oman shark, Iago omanensis (Triakidae), in the Gulf of Aqaba, Red Sea. Anal. Rec. 249, 409-421.
8. Fishelson, L., Baranes, A. (1998a): Morphological and cytological ontogenesis of the Ampullae of Lorenzini and lateral line canals in the Oman shark, Iago omanensis Norman 1939 (Triakidae), from the Gulf of Aqaba, Red Sea. Anat. Rec. 252, 532-545.
9. Fishelson, L., Baranes, A., 1998b. Distribution, morphology, and cytology of Ampullae of Lorenzini in the Oman shark, Iago omanensis (Triakidae), from the Gulf of Aqaba, Red Sea. Anat. Rec. 251, 417-430.
10. Fouquet, B. (1991). Expression von Intermediärfilament-Proteinen in Xenopus laevis. PhD thesis. pp. 1-175. Faculty of Biology, University of Heidelberg, Heidelberg, Germany.
11. Groff, J. M., Nayan, D. K., Higgins, R. J., 1997. Cytokeratin-filament expression in epithelial and non-epithelial tissues of the common carp (Cyprinus carpio). Cell Tissue Res. 287, 375-384.
12. Herrmann, H., Fouquet, B., Franke, W. W., 1989. Expression of intermediate filament proteins during development of Xenopus laevis. I. cDNA clones encoding different forms of vimentin. Development 105, 279-298.
13. Hesse, M., Magin, T. M., Weber, K., 2001. Genes for intermediate filament proteins and the draft sequence of the human genome: novel keratin genes and a surprisingly high number of pseudogenes related to keratin genes 8 and 18. J. Cell Sci. 114, 2569-2575.
14. Higgins, D. G., Thompson, J. D., Gibson, T. J., 1996. Using CLUSTAL for multiple sequence alignments. Methods Enzymol. 266, 383-402.
15. Jones, D. T., Taylor, W. R., Thornton, J. M., 1992. The rapid generation of mutation data matrices from protein sequences. Comput. Appl. Biosci. 8, 275-282.
16. Kirfel, J., Magin, T. M., Reichelt, J., 2003. Keratins: a structural scaffold with emerging functions. Cell. Mol. Life Sci. 60, 56-71.
17. Lazarides, E., 1982. Intermediate filaments: a chemically heterogeneous, developmentally regulated class of proteins. Annu. Rev. Biochem. 51, 219-250.
18. Markl, J., Franke, W. W., 1988. Localization of cytokeratins in tissues of the rainbow trout: fundamental differences in expression pattern between fish and higher vertebrates. Differentiation 39, 97-122.
19. Markl, J., Winter, S., Franke, W. W., 1989. The catalog and the expression complexity of cytokeratins in a lower vertebrate: biochemical identification of cytokeratins in a teleost fish, the rainbow trout. Eur. J. Cell Biol. 50, 1-16.
20. Markl, J., Schechter, N., 1998. Fish intermediate filament proteins in structure, function and evolution. Subcell. Biochem. 31, 1-33.
21. Moll, R., Franke, W. W., Schiller, D. L., Geiger, B., Krepler, R., 1982. The catalog of human cytokeratins: patterns of expression in normal epithelia, tumors and cultured cells. Cell 31, 11-24.
22. Omary, M. B., Ku, N. O., Liao, J., Price, D., 1998. Keratin modifications and solubility properties in epithelial cells and in vitro. Subcell. Biochem. 31, 105-140.
23. Page, R. D. M., 1996. TREEVIEW: an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12, 357-358.
24. Paramio, J. M., Casanova, M. L., Segrelles, C., Mittnacht, S., Lane, E. B., Jorcano, J. L., 1999. Modulation of cell proliferation by cytokeratins K10 and K16. Mol. Cell. Biol. 19, 3086-3094.
25. Paramio, J. M., Segrelles, C., Ruiz, S., Jorcano, J. L., 2001. Inhibition of protein kinase B (PKB) and PKCzeta mediates keratin K10-induced cell cycle arrest. Mol. Cell. Biol. 21, 7449-7459.
26. Paramio, J. M., Jorcano, J. L., 2002. Beyond structure: do intermediate filaments modulate cell signalling? Bioessays 24, 836-844.
27. Rasmussen, A. S., Janke, A., Arnason, U., 1998. The mitochondrial DNA molecule of the hagfish (Myxine glutinosa) and vertebrate phylogeny. J. Mol. Evol. 46, 382-388.
28. Rasmussen, A. S., Arnason, U., 1999a. Molecular studies suggest that cartilaginous fishes have a terminal position in the piscine tree. Proc. Natl. Acad. Sci. USA 96, 2177-2182.
29. Rasmussen, A. S., Arnason, U., 1999b. Phylogenetic studies of complete mitochondrial DNA molecules place cartilaginous fishes within the tree of bony fishes. J. Mol. Evol. 48, 118-123.
30. Saitou, N., Nei, M., 1987. The neighbor-joining method: a new method for reconstructing phylogenctic trees. Mol. Biol. Evol. 4, 1406-1425.
31. Schaffeld, M., Löbbecke, A., Lieb, B., Markl, J., 1998. Tracing keratin evolution: Catalog, expression patterns and primary structure of shark (Scyliorhinus stellaris) keratins. Eur. J. Cell Biol. 77, 69-80.
32. Schaffeld, M., Herrmann, H., Schultess, J., Markl, J., 2001. Vimentin and desmin of a cartilaginous fish, the shark Scyliorhinus stellaris: Sequence, expression patterns and in vitro assembly. Eur. J. Cell Biol. 80, 692-702.
33. Schaffeld, M., Haberkamp, M., Braziulis, E., Lieb, B., Markl, J., 2002a. Type II keratin cDNAs from the rainbow trout: Implications for keratin evolution. Differentiation 70, 282-291.
34. Schaffeld, M., Höffling, S., Haberkamp, M., Conrad, M., Markl, J., 2002b. Type I keratin cDNAs from the rainbow trout: independent radiation of keratins in fish. Differentiation 70, 292-299.
35. Schaffeld, M., Knappe, M., Hunzinger, C., Markl, J., 2003. cDNA sequences of the authentic keratins 8 and 18 in zebrafish. Differentiation 71, 73-82.
36. Schultess, J., Schaffeld, M., Markl, J., 2001. Intermediate filament protein sequences of the cyclostome Lampetra fluviatilis. Abstract, First Joint French-German Congress on Cell Biology. Biol. Cell 93, 235.
37. Thompson, J. D., Higgins, D. G., Gibson, T. J., 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680.
38. Thompson, J. D., Gibson, T. J., Plewniak, E, Jeanmougin, E, Higgins, D. G., 1997. The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools, Nucleic Acids Res. 25, 4876-4882.
39. Zardoya, R., Meyer, A., 2001. Vertebrate phylogeny: limits of inference of mitochondrial genome and nuclear rDNA sequence data due to an adverse phylogenetic signal/noise ratio, in: Ahlberg, E. (Ed.), Major events in early vertebrate evolution. Taylor and Francis, London and New York, pp. 135-155.
40. Zimek, A., Stick, R., Weber, K., 2003. Genes coding for intermediate filament proteins: common features and unexpected differences in the genomes of humans and the teleost fish Fugu rubripes. J. Cell Sci. 116, 2295-2302