Desulfoluna butyratoxydans gen. nov., sp. nov., a novel Gram-negative, butyrate-oxidizing, sulfate-reducing bacterium isolated from an estuarine sediment in Japan

International Journal of Systematic and Evolutionary Microbiology

Volumn 58, Issue 4, 2008, Pages 826-832

  Suzuki, Daisuke ^a   Ueki, Atsuko ^a   Amaishi, Aya ^a,b   Ueki, Katsuji ^a  

^a YAMAGATA UNIVERSITY   (Japan)

^b TAISEI CORPORATION   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ALANINE; ALCOHOL; ASPARTIC ACID; BUTANOL; BUTYRIC ACID; CATALASE; FATTY ACID; FORMIC ACID; FUMARIC ACID; GENOMIC DNA; GLUTAMIC ACID; GLYCEROL; GLYCINE; HYDROGEN; LACTIC ACID; MALIC ACID; MENAQUINONE; METHANOL; OXIDOREDUCTASE; PROPANOL; PROPIONIC ACID; PYRUVIC ACID; RNA 16S; SERINE; SODIUM CHLORIDE; SUCCINIC ACID; SULFATE; SULFITE; THIOSULFATE; BACTERIAL DNA; BACTERIAL RNA;

ANAEROBIC BACTERIUM; ARTICLE; BACTERIAL GROWTH; BACTERIAL METABOLISM; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CONTROLLED STUDY; DELTAPROTEOBACTERIA; DESULFOFRIGUS FRAGILE; DESULFOFRIGUS OCEANENSE; DESULFOLUNA BUTYRATOXYDANS; DNA CONTENT; ESTUARINE SPECIES; FERMENTATION; GRAM NEGATIVE BACTERIUM; JAPAN; MESOPHILIC BACTERIUM; MICROBIAL MORPHOLOGY; MOLECULAR PHYLOGENY; NEW GENUS; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PRIORITY JOURNAL; RNA SEQUENCE; SEDIMENT; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SPECIES COMPARISON; STRAIN DIFFERENCE; SULFATE REDUCING BACTERIUM; TYPE STRAIN; BACTERIAL GENE; CHEMISTRY; CLASSIFICATION; DNA BASE COMPOSITION; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; NOMENCLATURE; OXIDATION REDUCTION REACTION; PHYLOGENY; SPECIES DIFFERENCE;

BACTERIA (MICROORGANISMS); DELTAPROTEOBACTERIA; DESULFOFRIGUS FRAGILE; DESULFOFRIGUS OCEANENSE; NEGIBACTERIA;

BASE COMPOSITION; BUTYRIC ACID; DELTAPROTEOBACTERIA; DNA, BACTERIAL; FATTY ACIDS; GENES, BACTERIAL; GEOLOGIC SEDIMENTS; JAPAN; MOLECULAR SEQUENCE DATA; OXIDATION-REDUCTION; PHENOTYPE; PHYLOGENY; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SPECIES SPECIFICITY; SULFATES; TERMINOLOGY AS TOPIC;

EID: 47249118826     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65306-0     Document Type: Article

References (30)

1. Akasaka, H., Izawa, T., Ueki, K. & Ueki, A. (2003a). Phylogeny of numerically abundant culturable anaerobic bacteria associated with degradation of rice plant residue in Japanese paddy field soil. FEMS Microbiol Ecol 43, 149-161.
2. Akasaka, H., Ueki, A., Hanada, S., Kamagata, Y. & Ueki, K. (2003b). Propionicimonas paludicola gen. nov., sp. nov., a novel facultatively anaerobic, Gram-positive, propionate-producing bacterium isolated from plant residue in irrigated rice-field soil. Int J Syst Evol Microbiol 53, 1991-1998.
3. Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
4. Blenden, D. C. & Goldberg, H. S. (1965). Silver impregnation stain for Leptospira and flagella. J Bacteriol 89, 899-900.
5. Castro, H. F., Williams, N. H. & Ogram, A. (2000). Phylogeny of sulfate-reducing bacteria. FEMS Microbiol Ecol 31, 1-9.
6. Felsenstein, J. (2006). PHYLIP (phylogeny inference package), version 3.66. Department of Genome Sciences, University of Washington, Seattle, USA.
7. Hansen, T. A. (1993). Carbon metabolism in sulfate-reducing bacteria. In The Sulfate-Reducing Bacteria, pp. 21-40. Edited by J. M. Odom & R. Singleton. New York: Springer.
8. Hungate, R. E. (1966). The Rumen and its Microbes. New York: Academic Press.
9. Jørgensen, B. B. (1982). Mineralization of organic matter in the sea bed - the role of sulphate reduction. Nature 296, 643-645.
10. Knoblauch, C., Sahm, K. & Jorgensen, B. B. (1999). Psychrophilic sulfate-reducing bacteria isolated from permanently cold Arctic marine sediments: description of Desulfofrigus oceanense gen. nov., sp. nov., Desulfofrigus fragile sp. nov., Desulfofaba gelida gen. nov., sp. nov., Desulfotalea psychrophila gen. nov., sp. nov. and Desulfotalea arctica sp. nov. Int J Syst Bacteriol 49, 1631-1643.
11. Komagata, K. & Suzuki, K. (1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
12. Kuever, J., Rainey, F. A. & Widdel, F. (2005). Class IV. Deltaproteobacteria class nov. In Bergey's Manual of Systematic Bacteriology, vol. 2, part C, 2nd edn, pp. 922-1144. Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G. M. Garrity. New York: Springer.
13. Miller, L. T. (1982). Single derivatization method for routine analysis of bacterial whole-cell fatty acid methyl esters, including hydroxy acids. J Clin Microbiol 16, 584-586.
14. Miyagawa, E., Azuma, R. & Suto, E. (1979). Cellular fatty acid composition in Gram-negative obligately anaerobic rods. J Gen Appl Microbiol 25, 41-51.
15. Moore, L. V. H., Bourne, D. M. & Moore, W. E. C. (1994). Comparative distribution and taxonomic value of cellular fatty acids in thirty-three genera of anaerobic gram-negative bacilli. Int J Syst Bacteriol 44, 338-347.
16. Nakamoto, M., Ueki, A. & Ueki, K. (1996). Physiological properties of a sulfate-reducing bacterium isolated from municipal sewage sludge and its possible role as a syntrophic acidogen in the ecosystem. J Gen Appl Microbiol 42, 109-120.
17. Rabus, R., Hansen, T. & Widdel, F. (2000). Dissimilatory sulfate- and sulfur-reducing prokaryotes. In The Prokaryotes: An Evolving Electronic Resource for the Microbiological Community, 3rd edn. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K.-H. Schleifer & E. Stackebrandt. New York: Springer.
18. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
19. Sørensen, J., Christensen, D. & Jørgensen, B. B. (1981). Volatile fatty acids and hydrogen as substrates for sulfate-reducing bacteria in anaerobic marine sediment. Appl Environ Microbiol 42, 5-11.
20. Suzuki, D., Ueki, A., Amaishi, A. & Ueki, K. (2007a). Desulfopila aestuarii gen. nov., sp. nov., a novel, Gram-negative, rod-like, sulfate-reducing bacterium isolated from an estuarine sediment in Japan. Int J Syst Evol Microbiol 57, 520-526.
21. Suzuki, D., Ueki, A., Amaishi, A. & Ueki, K. (2007b). Desulfobulbus japonicus sp. nov., a novel, Gram-negative, propionate-oxidizing, sulfate-reducing bacterium isolated from an estuarine sediment in Japan. Int J Syst Evol Microbiol 57, 849-855.
22. Suzuki, D., Ueki, A., Amaishi, A. & Ueki, K. (2007c). Diversity of substrate utilization and growth characteristics of sulfate-reducing bacteria isolated from estuarine sediment in Japan. J Gen Appl Microbiol 53, 119-132.
23. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
24. Ueki, A. & Suto, T. (1979). Cellular fatty acid composition of sulfate-reducing bacteria. J Gen Appl Microbiol 25, 185-196.
25. Ueki, A., Minato, H., Azuma, R. & Suto, T. (1980). Enumeration and isolation of anaerobic bacteria in sewage digester fluids: enumeration of sulfate-reducers by the anaerobic roll tube method. J Gen Appl Microbiol 26, 25-35.
26. Ueki, A., Matsuda, K. & Ohtsuki, C. (1986). Sulfate reduction in the anaerobic digestion of animal waste. J Gen Appl Microbiol 32, 111-123.
27. Ueki, A., Akasaka, H., Suzuki, D., Hattori, S. & Ueki, K. (2006a). Xylanibacter oryzae gen. nov., sp. nov., a novel strictly anaerobic, Gram-negative, xylanolytic bacterium isolated from rice-plant residue in flooded rice-field soil in Japan. Int J Syst Evol Microbiol 56, 2215-2221.
28. Ueki, A., Akasaka, H., Suzuki, D. & Ueki, K. (2006b). Paludibacter propionicigenes gen. nov., sp. nov., a novel strictly anaerobic, Gram-negative, propionate-producing bacterium isolated from rice-plant residue in irrigated rice-field soil in Japan. Int J Syst Evol Microbiol 56, 39-44.
29. Widdel, F. & Bak, F. (1992). Gram-negative mesophilic sulfate-reducing bacteria. In The Prokaryotes, pp. 3352-3378. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K.-H. Schleifer. New York: Springer.
30. Widdel, F., Kohring, G.-W. & Mayer, F. (1983). Studies of dissimilatory sulfate-reducing bacteria that decompose fatty acids. III. Characterization of the filamentous gliding Desulfonema limicola gen. nov. and sp. nov. and Desulfonema magnum sp. nov. Arch Microbiol 134, 286-294.