메뉴 건너뛰기




Volumn 3, Issue 2, 2008, Pages

Use of cDNA Tiling Arrays for Identifying Protein Interactions Selected by In Vitro Display Technologies

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; OLIGONUCLEOTIDE; PROTEIN C JUN; TRANSCRIPTION FACTOR;

EID: 47049124842     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0001646     Document Type: Article
Times cited : (7)

References (34)
  • 1
    • 33846191182 scopus 로고    scopus 로고
    • Recent progress and future prospects in protein display technologies as tools for proteomics
    • Matsumura N, Doi N, Yanagawa H, (2006) Recent progress and future prospects in protein display technologies as tools for proteomics. Curr Proteomics 3: 199-215.
    • (2006) Curr Proteomics , vol.3 , pp. 199-215
    • Matsumura, N.1    Doi, N.2    Yanagawa, H.3
  • 2
    • 0021818675 scopus 로고
    • Filamentous fusion phage: novel expression vectors that display cloned antigens on the virion surface
    • Smith GP, (1985) Filamentous fusion phage: novel expression vectors that display cloned antigens on the virion surface. Science 228: 1315-1317.
    • (1985) Science , vol.228 , pp. 1315-1317
    • Smith, G.P.1
  • 3
    • 0028592703 scopus 로고
    • An in vitro polysome display system for identifying ligands from very large peptide libraries
    • Mattheakis LC, Bhatt RR, Dower WJ, (1994) An in vitro polysome display system for identifying ligands from very large peptide libraries. Proc Natl Acad Sci USA 91: 9022-9026.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 9022-9026
    • Mattheakis, L.C.1    Bhatt, R.R.2    Dower, W.J.3
  • 4
    • 0031574037 scopus 로고    scopus 로고
    • Antibody-ribosome-mRNA (ARM) complexes as efficient selection particles for in vitro display and evolution of antibody combining sites
    • He M, Taussig MJ, (1997) Antibody-ribosome-mRNA (ARM) complexes as efficient selection particles for in vitro display and evolution of antibody combining sites. Nucleic Acids Res 25: 5132-5134.
    • (1997) Nucleic Acids Res , vol.25 , pp. 5132-5134
    • He, M.1    Taussig, M.J.2
  • 5
    • 0030974119 scopus 로고    scopus 로고
    • In vitro selection and evolution of functional proteins by using ribosome display
    • Hanes J, Plückthun A, (1997) In vitro selection and evolution of functional proteins by using ribosome display. Proc Natl Acad Sci USA 94: 4937-4942.
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 4937-4942
    • Hanes, J.1    Plückthun, A.2
  • 6
    • 0032772534 scopus 로고    scopus 로고
    • STABLE: protein-DNA fusion system for screening of combinatorial protein libraries in vitro
    • Doi N, Yanagawa H, (1999) STABLE: protein-DNA fusion system for screening of combinatorial protein libraries in vitro. FEBS Lett 457: 227-230.
    • (1999) FEBS Lett , vol.457 , pp. 227-230
    • Doi, N.1    Yanagawa, H.2
  • 7
    • 0031559943 scopus 로고    scopus 로고
    • In vitro virus: bonding of mRNA bearing puromycin at the 3′-terminal end to the C-terminal end of its encoded protein on the ribosome in vitro
    • Nemoto N, Miyamoto-Sato E, Husimi Y, Yanagawa H, (1997) In vitro virus: bonding of mRNA bearing puromycin at the 3′-terminal end to the C-terminal end of its encoded protein on the ribosome in vitro. FEBS Lett 414: 405-408.
    • (1997) FEBS Lett , vol.414 , pp. 405-408
    • Nemoto, N.1    Miyamoto-Sato, E.2    Husimi, Y.3    Yanagawa, H.4
  • 8
    • 0030817279 scopus 로고    scopus 로고
    • RNA-peptide fusions for the in vitro selection of peptides and proteins
    • Roberts RW, Szostak JW, (1997) RNA-peptide fusions for the in vitro selection of peptides and proteins. Proc Natl Acad Sci USA 94: 12297-12302.
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 12297-12302
    • Roberts, R.W.1    Szostak, J.W.2
  • 9
    • 0043163705 scopus 로고    scopus 로고
    • Highly stable and efficient mRNA templates for mRNA-protein fusions and C-terminally labeled proteins
    • Miyamoto-Sato E, Takashima H, Fuse S, Sue K, Ishizaka M, et al.(2003) Highly stable and efficient mRNA templates for mRNA-protein fusions and C-terminally labeled proteins. Nucleic Acids Res 31: e78.
    • (2003) Nucleic Acids Res , vol.31
    • Miyamoto-Sato, E.1    Takashima, H.2    Fuse, S.3    Sue, K.4    Ishizaka, M.5
  • 10
    • 0035810165 scopus 로고    scopus 로고
    • Functional proteins from a random-sequence library
    • Keefe AD, Szostak JW, (2001) Functional proteins from a random-sequence library. Nature 410: 715-718.
    • (2001) Nature , vol.410 , pp. 715-718
    • Keefe, A.D.1    Szostak, J.W.2
  • 11
    • 0032564346 scopus 로고    scopus 로고
    • Ribosome display efficiently selects and evolves high-affinity antibodies in vitro from immune libraries
    • Hanes J, Jermutus L, Weber-Bornhauser S, Bosshard HR, Plückthun A, (1998) Ribosome display efficiently selects and evolves high-affinity antibodies in vitro from immune libraries. Proc Natl Acad Sci USA 95: 14130-14135.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 14130-14135
    • Hanes, J.1    Jermutus, L.2    Weber-Bornhauser, S.3    Bosshard, H.R.4    Plückthun, A.5
  • 13
    • 0035877791 scopus 로고    scopus 로고
    • In vitro selection and characterization of Bcl-X(L)-binding proteins from a mix of tissue-specific mRNA display libraries
    • Hammond PW, Alpin J, Rise CE, Wright M, Kreider BL, (2001) In vitro selection and characterization of Bcl-X(L)-binding proteins from a mix of tissue-specific mRNA display libraries. J Biol Chem 276: 20898-20906.
    • (2001) J Biol Chem , vol.276 , pp. 20898-20906
    • Hammond, P.W.1    Alpin, J.2    Rise, C.E.3    Wright, M.4    Kreider, B.L.5
  • 14
    • 21144480358 scopus 로고    scopus 로고
    • Cell-free cotranslation and selection using in vitro virus for high-throughput analysis of protein-protein interactions and complexes
    • Miyamoto-Sato E, Ishizaka M, Horisawa K, Tateyama S, Takashima H, et al.(2005) Cell-free cotranslation and selection using in vitro virus for high-throughput analysis of protein-protein interactions and complexes. Genome Res 15: 710-717.
    • (2005) Genome Res , vol.15 , pp. 710-717
    • Miyamoto-Sato, E.1    Ishizaka, M.2    Horisawa, K.3    Tateyama, S.4    Takashima, H.5
  • 15
    • 0035986682 scopus 로고    scopus 로고
    • Drug receptor identification from multiple tissues using cellular-derived mRNA display libraries
    • McPherson M, Yang Y, Hammond PW, Kreider BL, (2002) Drug receptor identification from multiple tissues using cellular-derived mRNA display libraries. Chem Biol 9: 691-698.
    • (2002) Chem Biol , vol.9 , pp. 691-698
    • McPherson, M.1    Yang, Y.2    Hammond, P.W.3    Kreider, B.L.4
  • 17
    • 0024406857 scopus 로고
    • A novel genetic system to detect protein-protein interactions
    • Fields S, Song O, (1989) A novel genetic system to detect protein-protein interactions. Nature 340: 245-246.
    • (1989) Nature , vol.340 , pp. 245-246
    • Fields, S.1    Song, O.2
  • 18
    • 0034841844 scopus 로고    scopus 로고
    • The tandem affinity purification (TAP) method: a general procedure of protein complex purification
    • Puig O, Caspary F, Rigaut G, Rutz B, Bouveret E, et al.(2001) The tandem affinity purification (TAP) method: a general procedure of protein complex purification. Methods 24: 218-229.
    • (2001) Methods , vol.24 , pp. 218-229
    • Puig, O.1    Caspary, F.2    Rigaut, G.3    Rutz, B.4    Bouveret, E.5
  • 19
    • 24044455869 scopus 로고    scopus 로고
    • Genome sequencing in microfabricated high-density picolitre reactors
    • Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, et al.(2005) Genome sequencing in microfabricated high-density picolitre reactors. Nature 437: 376-380.
    • (2005) Nature , vol.437 , pp. 376-380
    • Margulies, M.1    Egholm, M.2    Altman, W.E.3    Attiya, S.4    Bader, J.S.5
  • 22
    • 17044391149 scopus 로고    scopus 로고
    • Application of quantitative real-time PCR for monitoring the process of enrichment of clones on in vitro protein selection
    • Horisawa K, Doi N, Takashima H, Yanagawa H, (2005) Application of quantitative real-time PCR for monitoring the process of enrichment of clones on in vitro protein selection. J Biochem 137: 121-124.
    • (2005) J Biochem , vol.137 , pp. 121-124
    • Horisawa, K.1    Doi, N.2    Takashima, H.3    Yanagawa, H.4
  • 23
    • 7444267352 scopus 로고    scopus 로고
    • Global analysis of the expression patterns of transcriptional regulatory factors in formation of embryoid bodies using sensitive oligonucleotide microarray systems
    • Gunji W, Kai T, Sameshima E, Iizuka N, Katagi H, et al.(2004) Global analysis of the expression patterns of transcriptional regulatory factors in formation of embryoid bodies using sensitive oligonucleotide microarray systems. Biochem Biophys Res Commun 325: 265-275.
    • (2004) Biochem Biophys Res Commun , vol.325 , pp. 265-275
    • Gunji, W.1    Kai, T.2    Sameshima, E.3    Iizuka, N.4    Katagi, H.5
  • 25
    • 0036852098 scopus 로고    scopus 로고
    • Gene expression analysis using oligonucleotide arrays produced by maskless photolithography
    • Nuwaysir EF, Huang W, Albert TJ, Singh J, Nuwaysir K, et al.(2002) Gene expression analysis using oligonucleotide arrays produced by maskless photolithography. Genome Res 12: 1749-1755.
    • (2002) Genome Res , vol.12 , pp. 1749-1755
    • Nuwaysir, E.F.1    Huang, W.2    Albert, T.J.3    Singh, J.4    Nuwaysir, K.5
  • 26
    • 23844519339 scopus 로고    scopus 로고
    • A high-resolution map of active promoters in the human genome
    • Kim TH, Barrera LO, Zheng M, Qu C, Singer MA, et al.(2005) A high-resolution map of active promoters in the human genome. Nature 436: 876-880.
    • (2005) Nature , vol.436 , pp. 876-880
    • Kim, T.H.1    Barrera, L.O.2    Zheng, M.3    Qu, C.4    Singer, M.A.5
  • 27
    • 0035971433 scopus 로고    scopus 로고
    • Close encounters of many kinds: Fos-Jun interactions that mediate transcription regulatory specificity
    • Chinenov Y, Kerppola TK, (2001) Close encounters of many kinds: Fos-Jun interactions that mediate transcription regulatory specificity. Oncogene 20: 2438-2452.
    • (2001) Oncogene , vol.20 , pp. 2438-2452
    • Chinenov, Y.1    Kerppola, T.K.2
  • 29
    • 0027491776 scopus 로고
    • The T-cell transcription factor NFATp is a substrate for calcineurin and interacts with Fos and Jun
    • Jain J, McCaffrey PG, Miner Z, Kerppola TK, Lambert JN, et al.(1993) The T-cell transcription factor NFATp is a substrate for calcineurin and interacts with Fos and Jun. Nature 365: 352-355.
    • (1993) Nature , vol.365 , pp. 352-355
    • Jain, J.1    McCaffrey, P.G.2    Miner, Z.3    Kerppola, T.K.4    Lambert, J.N.5
  • 30
    • 0003656919 scopus 로고    scopus 로고
    • Biology, 4th Ed
    • New York, The Benjamin/Cummings Publishing Company Inc
    • Campbell NA, (1996) Biology, 4th Ed. New York The Benjamin/Cummings Publishing Company Inc.
    • (1996)
    • Campbell, N.A.1
  • 31
    • 2642549921 scopus 로고    scopus 로고
    • Liver-enriched transcription factors in liver function and development. Part II: the C/EBPs and D site-binding protein in cell cycle control, carcinogenesis, circadian gene regulation, liver regeneration, apoptosis, and liver-specific gene regulation
    • Schrem H, Klempnauer J, Borlak J, (2004) Liver-enriched transcription factors in liver function and development. Part II: the C/EBPs and D site-binding protein in cell cycle control, carcinogenesis, circadian gene regulation, liver regeneration, apoptosis, and liver-specific gene regulation. Pharmacol Rev. 56: 291-330.
    • (2004) Pharmacol Rev , vol.56 , pp. 291-330
    • Schrem, H.1    Klempnauer, J.2    Borlak, J.3
  • 32
    • 0029098998 scopus 로고
    • Cloning of the cDNA encoding human C/EBP gamma, a protein binding to the PRE-I enhancer element of the human interleukin-4 promoter
    • Davydov IV, Bohmann D, Krammer PH, Li-Weber M, (1995) Cloning of the cDNA encoding human C/EBP gamma, a protein binding to the PRE-I enhancer element of the human interleukin-4 promoter. Gene 161: 271-275.
    • (1995) Gene , vol.161 , pp. 271-275
    • Davydov, I.V.1    Bohmann, D.2    Krammer, P.H.3    Li-Weber, M.4
  • 33
    • 0030850014 scopus 로고    scopus 로고
    • Luman, a new member of the CREB/ATF family, binds to herpes simplex virus VP16-associated host cellular factor
    • Lu R, Yang P, O'Hare P, Misra V, (1997) Luman, a new member of the CREB/ATF family, binds to herpes simplex virus VP16-associated host cellular factor. Mol Cell Biol. 17: 5117-5126.
    • (1997) Mol Cell Biol , vol.17 , pp. 5117-5126
    • Lu, R.1    Yang, P.2    O'Hare, P.3    Misra, V.4
  • 34
    • 2942679506 scopus 로고    scopus 로고
    • The loss of circadian PAR bZip transcription factors results in epilepsy
    • Gachon F, Fonjallaz P, Damiola F, Gos P, Kodama T, et al.(2004) The loss of circadian PAR bZip transcription factors results in epilepsy. Genes Dev. 18: 1397-1412.
    • (2004) Genes Dev , vol.18 , pp. 1397-1412
    • Gachon, F.1    Fonjallaz, P.2    Damiola, F.3    Gos, P.4    Kodama, T.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.