Marmoricola bigeumensis sp. nov., a member of the family Nocardioidaceae

International Journal of Systematic and Evolutionary Microbiology

Volumn 58, Issue 5, 2008, Pages 1060-1063

  Dastager, Syed G ^a   Lee , Jae Chan ^a   Ju, Yoon Jung ^a   Park, Dong Jin ^a   Kim, Chang Jin ^a  

^a Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CYTOSINE; DIAMINOPIMELIC ACID; FATTY ACID; GUANINE; MENAQUINONE; PEPTIDOGLYCAN; RNA 16S;

ARTICLE; BACTERIAL CELL; BACTERIAL GENE; BACTERIAL GROWTH; BACTERIAL STRAIN; CHEMOTAXONOMY; CLADISTICS; CONTROLLED STUDY; DNA CONTENT; GENE SEQUENCE; GENUS; GRAM POSITIVE BACTERIUM; KOREA; MARMORICOLA AEQUOREUS; MARMORICOLA AURANTIACUS; MARMORICOLA BIGEUMENSIS; NEW SPECIES; NOCARDIOIDACEAE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; STRAIN DIFFERENCE; STRAIN IDENTIFICATION; ACTINOMYCETALES; BACTERIUM IDENTIFICATION; CLASSIFICATION; DNA SEQUENCE; GENETICS; GENOTYPE; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; PHYSIOLOGY; RNA GENE; SPECIES DIFFERENCE;

COCCOIDEA; MARMORICOLA; MARMORICOLA AURANTIACUS; NOCARDIOIDACEAE; POSIBACTERIA;

ACTINOMYCETALES; BACTERIAL TYPING TECHNIQUES; DNA, BACTERIAL; GENES, RRNA; GENOTYPE; MOLECULAR SEQUENCE DATA; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; SPECIES SPECIFICITY;

EID: 47049119230     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65576-0     Document Type: Article

References (19)

1. Chun, J., Lee, J.-H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y. W. (2007). EzTaxon: A web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
2. Cui, X. L., Mao, P. H., Tseng, M., Li, W. J., Zhang, L. P., Xu, L. H. & Jiang, C. L. (2001). Streptomonospora gen. nov., a new member of the family Nocardiopsaceae. Int J Syst Evol Microbiol 51, 357-363.
3. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
4. Felsenstein, J. (1985). Confidence limits on phylogenetics: an approach using the bootstrap. Evolution 39, 783-791.
5. Fitch, W. M. & Margoliash, E. (1967). Construction of phylogenetic trees: a method based on mutation distances as estimated from cytochrome c sequences is of general applicability. Science 155, 279-284.
6. Groth, I., Schumann, P., Rainey, F. A., Martin, K., Schuetze, B. & Augsten, K. (1997). Demetria terragena gen. nov., sp. nov., a new genus of actinomycetes isolated from compost soil. Int J Syst Bacteriol 47, 1129-1133.
7. Kämpfer, P., Kroppenstedt, R. M. & Dott, W. (1991). A numerical classification of the genera Streptomyces and Streptoverticillium using miniaturized physiological tests. J Gen Microbiol 137, 1831-1891.
8. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequence. J Mol Evol 16, 111-120.
9. Kroppenstedt, R. M. (1982). Separation of bacterial menaquinones by HPLC using reverse phase (RP 18) and a silver loaded ion exchanger as stationary phases. J Liq Chromatogr 5, 2359-2367.
10. Lee, S. D. (2007). Marmoricola aequoreus sp. nov., a novel actinobacterium isolated from marine sediment. Int J Syst Evol Microbiol 57, 1391-1395.
11. Mandel, M. & Marmur, J. (1968). Use of ultraviolet absorbance-temperature profile for determining the guanine plus cytosine content of DNA. Methods Enzymol 12B, 195-206.
12. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
13. Miller, L. T. (1982). Single derivatization method for routine analysis of bacterial whole cell-fatty acid methyl esters, including hydroxy acids. J Clin Microbiol 16, 584-586.
14. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, K. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
15. Reasoner, D. J. & Geldreich, E. E. (1985). A new medium for the enumeration and subculture of bacteria from potable water. Appl Environ Microbiol 49, 1-7.
16. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313-340.
17. Staneck, J. L. & Roberts, G. D. (1974). Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28, 226-231.
18. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24, 4876-4882.
19. Urzì C., Salamone, P., Schumann, P. & Stackebrandt, E. (2000). Marmoricola aurantiacus gen. nov., sp. nov., a coccoid member of the family Nocardioidaceae isolated from a marble statue. Int J Syst Evol Microbiol 50, 529-536.