Analysis of the phylogenetic diversity of estrone-degrading bacteria in activated sewage sludge using microautoradiography-fluorescence in situ hybridization

Systematic and Applied Microbiology

Volumn 31, Issue 3, 2008, Pages 206-214

  Zang, Kaisai ^a   Kurisu, Futoshi ^a   Kasuga, Ikuro ^a   Furumai, Hiroaki ^a   Yagi, Osami ^b  

^a UNIVERSITY OF TOKYO   (Japan)

^b NIHON UNIVERSITY   (Japan)

Author keywords

Activated sludge; Estrone degrading bacteria; Microautoradiography fluorescence in situ hybridization

Indexed keywords

ESTRONE;

ACTINOBACTERIA; ACTIVATED SLUDGE; ALPHAPROTEOBACTERIA; ARTICLE; AUTORADIOGRAPHY; BACTERIUM; BACTERIUM ISOLATE; BACTEROIDETES; BETAPROTEOBACTERIA; CHLOROFLEXI; CLUSTER ANALYSIS; CONTROLLED STUDY; CYTOPHAGA; FLAVOBACTERIUM; FLUORESCENCE IN SITU HYBRIDIZATION; GAMMAPROTEOBACTERIA; HORMONE SYNTHESIS; IN SITU HYBRIDIZATION; MICROBIAL COMMUNITY; MICROBIAL DIVERSITY; NITROSPIRA; NONHUMAN; PHYLOGENY; PHYLUM; PLANCTOMYCETES; PRIORITY JOURNAL;

AUTORADIOGRAPHY; BACTERIA; BETAPROTEOBACTERIA; BIODIVERSITY; DNA, RIBOSOMAL; ESTRONE; GAMMAPROTEOBACTERIA; IN SITU HYBRIDIZATION, FLUORESCENCE; OLIGONUCLEOTIDE PROBES; PHYLOGENY; RNA, RIBOSOMAL, 16S; RNA, RIBOSOMAL, 23S; SEWAGE; WASTE DISPOSAL, FLUID;

ACTINOBACTERIA; ALPHAPROTEOBACTERIA; BACTERIA (MICROORGANISMS); BACTEROIDETES; BETAPROTEOBACTERIA; CHLOROFLEXI; CHLOROFLEXI (CLASS); CYTOPHAGA; FLAVOBACTERIUM; GAMMAPROTEOBACTERIA; NITROSPIRA; PLANCTOMYCETES;

EID: 46849113847     PISSN: 07232020     EISSN: 16180984     Source Type: Journal    
DOI: 10.1016/j.syapm.2008.03.005     Document Type: Article

References (47)

1. Amann R.I., Binder B.J., Olson R.J., Chisholm S.W., Devereux R., and Stahl D.A. Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl. Environ. Microbiol. 56 (1990) 1919-1925
2. Amann R.I., Ludwig W., Schulze R., Spring S., Moore E., and Schleifer K.-H. rRNA-targeted oligonucleotide probes for the identification of genuine and former pseudomonads. Syst. Appl. Microbiol. 19 (1996) 501-509
3. Amann R.I., Snaidr J., Wagner M., Ludwig W., and Schleifer K.-H. In situ visualization of high genetic diversity in a natural microbial community. J. Bacteriol. 178 (1996) 3496-3500
4. Auriol M., Filali-Meknassi Y., Tyagi R.D., Adams C.D., and Surampali R.Y. Endocrine disrupting compounds removal from wastewater, a new challenge. Process Biochem. 41 (2006) 525-539
5. Baronti C., Curini R., d'Ascenzo G., Corcia A.D., Gentili A., and Samperi R. Monitoring natural and synthetic estrogens at activated sludge sewage treatment plants and in a receiving river water. Environ. Sci. Technol. 34 (2000) 5059-5066
6. Bathe S., and Hausner M. Design and evaluation of 16S rRNA sequence based oligonucleotide probes for the detection and quantification of Comamonas testosteroni in mixed microbial communities. BMC Microbiol. 6 (2006) 54
7. Björnsson L., Hugenholtz P., Tyson G.W., and Blackall L.L. Filamentous Chloroflexi (green non-sulfur bacteria) are abundant in wastewater treatment processes with biological nutrient removal. Microbiology 148 (2002) 2309-2318
8. Chao Y., Kurisu F., Satoh S., and Yagi O. Degradation of 17β-estradiol by Sphingomonas sp. strain D12 isolated from soil. J. Environ. Biotechnol. 3 (2004) 89-94
9. Cole J.R., Chai B., Farris R.J., Wang Q., Kulam-Syed-Mohideen A.S., McGarrell D.M., Bandela A.M., Cardenas E., Garrity G.M., and Tiedje J.M. The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data. Nucleic Acids Res. 35 Database issue (2007) D169-D172 10.1093/nar/gkl889
10. Daims H., Brühl A., Amann R., Schleifer K.-H., and Wagner M. The domain-specific probe EUB338 is insufficient for the detection of all bacteria: development and evaluation of a more comprehensive probe set. Syst. Appl. Microbiol. 22 (1999) 434-444
11. Daims H., Nielsen J.L., Nielsen J.P., Schleifer K.-H., and Wagner M. In situ characterization of Nitrospira-like nitrite-oxidizing bacteria active in wastewater treatment plants. Appl. Environ. Microbiol. 67 (2001) 5273-5284
12. Fujii K., Kikuchi S., Satomi M., Ushio-Sata N., and Morita N. Degradation of 17β-estradiol by a Gram-negative bacterium isolated from activated sludge in a sewage treatment plant in Tokyo, Japan. Appl. Environ. Microbiol. 68 (2002) 2057-2060
13. Gich F., Garcia-Gil J., and Overmann J. Previously unknown and phylogenetically diverse members of the green nonsulfur bacteria are indigenous to freshwater lakes. Arch. Microbiol. 177 (2001) 1-10
14. Ginige M.P., Keller J., and Blackall L.L. Investigation of an acetate-fed denitrifying microbial community by stable isotope probing, full-cycle rRNA analysis and fluorescent in situ hybridization-microautoradiography. Appl. Environ. Technol. 71 (2005) 8683-8691
15. Hashimoto T., Onda K., Nakamura Y., Tada K., Miya A., and Mishina F. Fate and behavior of endocrine disrupters in wastewater treatment plants. J. Jpn. Soc. Water Environ. 27 (2004) 797-802
16. Johnson A.C., Aerni H.-R., Gerritsen A., et al. Comparing steroid estrogen, and nonylphenol content across a range [sic] of European sewage plants with different treatment and management practices. Water Res. 39 (2005) 47-58
17. Joss A., Andersen H., Ternes T., Richle P.R., and Siegrist H. Removal of estrogens in municipal wastewater treatment under aerobic and anaerobic conditions: consequences for plant optimisation. Environ. Sci. Technol. 38 (2004) 3047-3055
18. Juretschko S., Timmermann G., Schmid M., Schleifer K.-H., Pommerening-Röser A., Koops H.-P., and Wagner M. Combined molecular and conventional analyses of nitrifying bacterium diversity in activated sludge: Nitrosococcus mobilis and Nitrospira-like bacteria as dominant populations. Appl. Environ. Microbiol. 64 (1998) 3042-3051
19. Kindaichi T., Ito T., and Okabe S. Ecophysiological interaction between nitrifying bacteria and heterotrophic bacteria in autotrophic nitrifying biofilms as determined by microautoradiography-fluorescence in situ hybridisation. Appl. Environ. Microbiol. 70 (2004) 1641-1650
20. Komori K., Tanaka H., Okayasu Y., Yasojima M., and Sato C. Analysis and occurrence of estrogen in wastewater in Japan. Water Sci. Technol. 50 (2004) 93-100
21. Kong Y., Nielsen J.L., and Nielsen P.H. Identity and ecophysiology of uncultured Actinobacterial polyphosphate-accumulating organisms in full-scale enhanced biological phosphorus removal plants. Appl. Environ. Microbiol. 71 (2005) 4076-4085
22. Larsson D.G.J., Adolfsson-Erici M., Parkkonen J., Pettersson M., Berg A.H., Olsson P.E., and Forlin L. Ethinylestradiol - an undesired fish contraceptive?. Aquat. Toxicol. 45 (1999) 91-97
23. Lee N., Nielsen P.H., Andreasen K.H., Juretschko S., Nielsen J.P., Schleifer K.-H., and Wagner M. Combination of fluorescent in situ hybridization and microautoradiography - a new tool for structure-function analyses in microbial ecology. Appl. Environ. Microbiol. 65 (1999) 1289-1297
24. Li F., Yuasa A., Obara A., and Mathews A.P. Aerobic batch degradation of 17-β estradiol (E2) by activated sludge: effects of spiking E2 concentrations, MLVSS and temperatures. Water Res. 39 (2005) 2065-2075
25. Loy A., Maixner F., Wagner M., and Horn M. Probe base - an online resource for rRNA-targeted oligonucleotide probes: new features 2007. Nucleic Acids Res. 35 (2007) D800-D804
26. Manz W., Amann R., Ludwig W., Vancanneyt M., and Schleifer K.-H. Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum Cytophaga-Flavobacter-Bacteroides in the natural environment. Microbiology 142 (1996) 1097-1106
27. Manz W., Amann R., Ludwig W., Wagner M., and Schleifer K.-H. Phylogenetic oligodeoxynucleotide probes for the major subclasses of Proteobacteria: problems and solutions. Syst. Appl. Microbiol. 15 (1992) 593-600
28. A. Neef, Anwendung der in situ Einzelzell-Identifizierung von Bakterien zur Populationsanalyse in komplexen mikrobiellen Biozönosen. Doctoral Thesis, Technische Universität München, Germany, 1997.
29. Neef A., Amann R., Schlesner H., and Schleifer K.-H. Monitoring a widespread bacterial group: in situ detection of planctomycetes with 16S rRNA-targeted probes. Microbiology 144 (1998) 3257-3266
30. Nielsen P.H., Andreasen K., Lee N., Wagner M., Blackall L.L., Lemmer H., and Seviour R.J. Variability of type 021N in activated sludge as determined by in situ substrate uptake pattern and in situ hybridization with fluorescent rRNA targeted probes. Water Sci. Technol. 37 (1998) 423-430
31. Nielsen J.L., and Nielsen P.H. Advances in microscopy: microautoradiography of single cells. In: Leadbetter J.R. (Ed). Methods in Enzymology vol. 397 (2005), Academic Press, San Diego 237-256
32. Okabe S., and Ito T. MAR-FISH - an ecophysiological approach to link phylogenetic affiliation and in situ metabolic activity of microorganisms at a single-cell resolution. Microbes Environ. 19 (2004) 83-98
33. J. Pernthaler, F.O. Glöckner, W. Schönhuber, R. Amann, Fluorescence in situ hybridization, in: J. Paul (Ed.), Methods in Microbiology: Marine Microbiology, vol.30, Academic Press Ltd., London.
34. Ren H., Ji S., ud din Ahmed N., Wang D., and Cui C. Degradation characteristics and metabolic pathway of 17alpha-ethynylestradiol by Sphingobacterium sp. JCR5. Chemosphere 66 2 (2007) 340-346
35. Rodgers-Gray T.P., Jobling S., Morris S., Kelly C., Kirby S., Janbakhsh A., Harries J.E., Waldock M.J., Sumpter J.P., and Tyler C.R. Long-term temporal changes in the estrogenic composition of treated sewage effluent and its biological effects on fish. Environ. Sci. Technol. 34 (2000) 1521-1528
36. Roller C., Wagner M., Amann R., Ludwig W., and Schleifer K.-H. In situ probing of Gram-positive bacteria with high DNA G+C content using 23S rRNA-targeted oligonucleotides. Microbiology 140 (1994) 2849-2858
37. Routledge E.J., Sheahan D., Desbrow C., Brighty G.C., Waldock M., and Sumpter J.P. Identification of estrogenic chemicals of STW effluent. 2. In vivo responses in trout and roach. Environ. Sci. Technol. 32 (1998) 1559-1565
38. Saino H., Yamagata H., Nakajima H., Shigemura H., and Suzuki Y. Removal of endocrine disrupters in wastewater by SRT control. J. Jpn. Soc. Water Environ. 27 (2004) 61-67
39. Schleifer K.-H., Amann R., Ludwig W., Rothemund C., Springer N., and Dorn S. Nucleic acid probes for the identification and in situ detection of Pseudomonads. In: Galli E., Silver S., and Witholt B. (Eds). Pseudomonas: Molecular Biology and Biotechnology (1992), American Society for Microbiology, Washington, DC 127-134
40. Snaidr J., Amann R., Huber I., Ludwig W., and Schleifer K.-H. Phylogenetic analysis and in situ identification of bacteria in activated sludge. Appl. Environ. Microbiol. 63 (1997) 2884-2896
41. Svenson A., Allard A.-S., and Ek M. Removal of estrogenicity in Swedish municipal sewage treatment plants. Water Res. 37 (2003) 4433-4443
42. Ternes T.A., Kreckel P., and Muellur J. Behavior and occurrence of estrogens in municipal sewage treatment plants: II. Aerobic batch experiments with activated sludge,. Sci. Total Environ. 225 (1999) 91-99
43. Ternes T.A., Stumpf M., Muellur J., Haberer K., Willken R.D., and Servos M. Behavior occurrence of estrogens in municipal sewage treatment plants: I. Investigations in Germany, Canada and Brazil. Sci. Total Environ. 225 (1999) 81-90
44. Weber S., Leuschner P., Kämpfer P., Dott W., and Hollender J. Degradation of estradiol and ethylestradiol by activated sludge and by a defined mixed culture. Appl. Microbiol. Biotechnol. 67 (2005) 106-112
45. Yoshimoto T., Nagai F., Fujimoto J., Watanabe K., Mizukoshi H., Makino T., Kimura K., Saino H., Sawada H., and Omura H. Degradation of estrogens by Rhodococcus zopfii and Rhodococcus equi isolates from activated sludge in wastewater treatment plants. Appl. Environ. Microbiol. 70 (2004) 5283-5289
46. Yu C.-P., Roh H., and Chu K.-H. 17β-Estradiol-degrading bacteria isolated from activated sludge. Environ. Sci. Technol. 41 (2007) 486-492
47. Zeillinger R., and Spona J. Pseudomonas testosteroni: new data about growth and steroid metabolism. FEMS Microbiol. Lett. 37 (1986) 231-235