Molecular phylogeny and distribution of three Apodemus species (Muridae, Rodentia) in Serbia

Journal of Zoological Systematics and Evolutionary Research

Volumn 46, Issue 3, 2008, Pages 278-286

  Bugarski Stanojevic V ^a   Blagojevic J ^a   Adnadevic T ^a   Jojic V ^a   Vujosevic M ^a  

^a UNIVERSITY OF BELGRADE   (Serbia)

Author keywords

AP PCR; Apodemus; C banding; Geographic distribution; Phylogeny

Indexed keywords

CHROMOSOME; ESTIMATION METHOD; GENETIC VARIATION; LAST GLACIATION; MOLECULAR ANALYSIS; PHYLOGENY; POLYMERASE CHAIN REACTION; REFUGE; RODENT; SPATIAL DISTRIBUTION;

BALKANS; EURASIA; EUROPE; SERBIA; SOUTHERN EUROPE;

APODEMUS; APODEMUS AGRARIUS; APODEMUS FLAVICOLLIS; APODEMUS SYLVATICUS; MURIDAE; RODENTIA;

EID: 46749155894     PISSN: 09475745     EISSN: 14390469     Source Type: Journal    
DOI: 10.1111/j.1439-0469.2007.00452.x     Document Type: Article

References (66)

1. Dulić B, Tvrtković N (1974) Some problems of taxonomy of Apodemus sylvaticus Linné, 1758 and Apodemus flavicollis Melchior, 1834 in Yugoslavia. In:Kratochvíl J, Obrtel R (eds Symposium Theriologicum II. Proceedings of the International Symposium on Species and Zoogeography of European Mammals, Brno 1971. Academia, Praha, pp 183 189.
2. Amori G, Contoli L (1994) Morphotypic, craniometric and genotypic diversification in Apodemus flavicollis and Apodemus sylvaticus. Boll Zool 61:353 357.
3. Atienzar AF, Jha NA (2006) The random amplified polymorphic DNA (RAPD) assay and related techniques applied to genotoxicity and carcinogenesis studies: A critical review. Mut Res 613:76 102.
4. Barčiová L, Macholán M (2006) Morphometric study of two species of wood mice Apodemus sylvaticus and A. flavicollis (Rodentia: Muridae): traditional and geometric morphometric approach. Acta Theriol 51:15-27. E (2004) A phylogenetic study of the genus Apodemus by sequencing the mitochondrial DNA control region. J Zool Sys Evol Res 42:289 297.
5. Bellinvia E, Munclinger P, Flegr J (1999) Application of the RAPD technique for a study of the phylogenetic relationships among eight species of the genus Apodemus. Folia Zool 48:241 248.
6. Blagojević J, Vujošević M (2000) Do B chromosomes affect morphometric characters in yellow-necked mice Apodemus flavicollis (Rodentia, Mammalia)? Acta Theriol 45:129 137.
7. Borowsky RL, McClelland M, Cheng R, Welsh J (1995) Arbitrarily primed DNA fingerprinting for phylogenetic reconstruction in vertebrates: Xiphophorus model. Mol Biol Evol 12:1022 1032.
8. Britton-Davidian J, Vahdati M, Benmehdi F, Gros P, Nancé V, Croset H, Guerassimov S, Triantaphyllidis C (1991) Genetic differentiation in four species of Apodemus from southern Europe: A. sylvaticus, A. flavicollis, A. agrarius and A. mystacinus (Muridae, Rodentia). Z Saugetierkd 56:25 33.
9. Chelomina GN (1996) DNA restriction fragment length polymorphism in European and Asiatic wood mice species of the genus Apodemus. Genetika 32:1382 1386.
10. Chelomina GN, Suzuki H, Tsuchiya K, Moriwaki K, Lyapunova EA, Vorontsov NN (1998) Sequencing of the mtDNA cytochrome b gene and reconstruction of the maternal relationships of wood and field mice of the genus Apodemus (Muridae, Rodentia). Russ J Genet 34:529 539.
11. Cobb BD, Clarkson JM (1994) A simple procedure for optimizing the polymerase chain reaction (PCR) using modified Taguchi methods. Nucleic Acids Res 22:3801 3805.
12. Çolak R, Çolak E, Yiǧit N (2005) Morphometric, karyotypic and electrophoretic analysis of the genus Apodemus Kaup, 1829 (Mammalia: Rodentia) in Thrace. Turk J Zool 29:147 153.
13. Corbet G, Ovenden D (1980) The Mammals of Britain and Europe. William Collins Sons and Co., Ltd, Glasgow.
14. Csaikl F, Engel W, Schmidtke J (1980) On the biochemical systematics of three Apodemus species. Comp Biochem Physiol 65:411 414.
15. Csaikl F, Habering M, Csaikl U (1990) A comparative restriction endonuclease analysis of nuclear DNA from Austrian Apodemus species: intraspecific variability in middle repetitive DNA families contrast isoenzyme data. Z Saugetierkd 55:55 59.
16. Engel W, Vogel W, Voiculescu I, Ropers HH, Zenzes MT, Bender K (1973) Cytogenetic and biochemical differences between Apodemus sylvaticus and Apodemus flavicollis, possibly responsible for the failure to interbreed. Comp Biochem Physiol 4:1163 1173.
17. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783 791.
18. Felsenstein J (1993) PHYLIP: Phylogeny Inference Package, version 3.6. University of Washington, Seattle.
19. Filippucci MG (1992) Allozyme variation and divergence among European, Middle Eastern and North African species of the genus Apodemus (Rodentia, Muridae). Israel J Zool 38:193 218.
20. Filippucci MG, Cristaldi M, Tizi L, Conotli L (1984) Dati morfologici e morfometrici in popolazioni di. Apodemus (Sylvaemus) dell'Italia centro-meridionale determinati elettroforeticamente. In:Contoli L, Cristaldi M, Filippucci MG, Tizi L, Vigna-Taglianti A (eds Recenti acquisizionisul genere Apodemus in Italia. Supplemento alle Ricerche di Biologia della Selvaggina IX, Bologna, pp 85 126.
21. Filippucci MG, Macholán M, Michaux JR (2002) Genetic variation and evolution in the genus Apodemus (Muridae: Rodentia). Biol J Linnean Soc 75:395 419.
22. Gébczyński M, Nielsen JT, Simonsen V (1986) An electrophoretic comparison between three sympatric species of rodents from Jutland, Denmark. Hereditas 104:55 59.
23. Gemmeke H (1980) Proteinvariation und Taxonomie in der Gattung Apodemus (Mammalia, Rodentia). Z Saugetierkd 46:348 365.
24. Gemmeke H, Radtke M, Niethammer J (1987) Zur innerartlichen Proteinvariation bei der Waldmaus (Apodemus sylvaticus). Z Säugetierkd 52:242 247.
25. Hewitt GM (1999) Post-glacial recolonisation of European biota. Biol J Linnean Soc 58:87 112.
26. Hirning U, Schulz WA, Just W, Adolph S, Vogel W (1989) A Comparative study of the heterochromatin of Apodemus sylvaticus and Apodemus flavicollis. Chromosoma 98:450 455.
27. Kotlik F, Deffontaine V, Mascheretti S, Zima J, Michaux RJ, Searl BJ (2006) A northern glacial refugium for bank voles (Clethrionomys glareolus). Proc Natl Acad Sci USA 103:14860 14864.
28. Kryštufek B, Stojanovski L (1996) Apodemus sylvaticus stankovici is a synonym of Apodemus flavicollis. Folia Zool 45:1 7.
29. Kuramoto T, Mashimo T, Serikawa T (1995) Fourteen anonymous DNA markers of laboratory rats identified with arbitrarily primed polymerase chain reaction (AP-PCR). Exp Anim 44:119 125.
30. Libois RM, Michaux JR, Ramalhinho MG, Maurois C, Sarà M (2001) On the origin and systematics of the northern African wood mouse (Apodemus sylvaticus) populations: a comparative study of mtDNA restriction patterns. Can J Zool 79:1503 1511.
31. Ling Y, Lu W-F, Lu F, Wang Y-G, Chen J-K, Zhang W-J (2006) PCR-RFLP and AP-PCR of rbcL and ITS of rDNA Show That × Taxodiomeria peizhongii (Taxodium × Cryptomeria) is not an intergeneric hybrid. J Integrative Plant Biol 48:468 472.
32. Liu X, Wei F, Li M, Jiang X, Feng Z, Hu J (2004) Molecular phylogeny and taxonomy of wood mice (genus Apodemus Kaup, 1829) based on complete mtDNA cytochrome b sequences, with emphasis on Chinese species. Mol Phylogenet Evol 33:1 15.
33. Macholán M, Filippucci MG, Benda P, Frynta D, Sá dlová J (2001) Allozyme variation and systematics of the genus Apodemus (Muridae, Rodentia) in Asia Minor and Iran. J Mammal 82:799 813.
34. Maniatis T, Fritsch E, Sambrook J (1982) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
35. Martin Y, Gerlach G, Schlötterer C, Meyer A (2000) Molecular phylogeny of European muroid rodents based on complete Cytochrome b sequences. Mol Phylogenet Evol 16:37 47.
36. Martino V (1939) Materials for ecology and zoogeography of the mammals of S. Serbia. Zap Russ Nauč Inst 14:85 106.
37. McClelland M, Welsh J (1994) DNA fingerprinting by arbitrarily primed PCR. PCR Methods Appl 4:59 65.
38. Michaux JR, Filippucci MG, Libois RM, Fons R, Matagne RF (1996) Biogeography and taxonomy of Apodemus sylvaticus (the woodmouse) in the Tyrrhenian region: enzymatic variations and mitochondrial DNA restriction pattern analysis. Heredity 76:267 277.
39. Michaux JR, Libois R, Ramalhinho MG, Maurois C (1998) On the mtDNA restriction patterns variation of the iberian wood mouse (Apodemus sylvaticus). Comparison with other west Mediterranean populations. Hereditas 129:187 194.
40. Michaux JR, Kinet S, Filippucci MG, Libois R, Besnard A, Catzeflis F (2001) Molecular identification of three sympatric species of wood mice (Apodemus sylvaticus, A. flavicollis, A. alpicola) in western Europe (Muridae, Rodentia). Mol Ecol Notes 1:260 263.
41. Michaux JR, Chevret P, Filippucci MG, Macholán M (2002) Phylogeny of the genus Apodemus with a special emphasis on the subgenus Sylvaemus using the nuclear IRBP gene and two mitochondrial markers: cytochrome b and 12S rRNA. Mol Phylogenet Evol 23:123 136.
42. Michaux JR, Magnanou E, Paradis E, Nieberding C, Libois RM (2003) Mitochondrial phylogeography of the woodmouse (Apodemus sylvaticus) in the Western Palearctic region. Mol Ecol 12:685 697.
43. Michaux JR, Libois R, Filippucci MG (2005) So close and so different: comparative phylogeography of two small mammal species, the yellow-necked fieldmouse (Apodemus flavicollis) and the woodmouse (Apodemus sylvaticus) in the Western Palearctic region. Heredity 94:52 63.
44. Musser GG, Carleton MD (1993) Family Muridae. In:Wilson DE, Reeder DAM (eds Mammal Species of the World. 2nd edn. Smithsonian Institution Press, Washington and London, pp 501 755.
45. Nei M, Li WH (1979) Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sci USA 76:5269 5273.
46. Orlov VN, Bulatova NSH, Nadjafova RS, Kozlovsky AI (1996) Evolutionary classification of European wood mice of the subgenus Sylvaemus based on allozyme and chromosome data. Bonn zool Beitr 46:191 202.
47. Page RDM (1996) TREEVIEW: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12:357 358.
48. Pavlíèek A, Hrdá Š, Flegr J (1999) FreeTree program for construction of phylogenetic trees on the basis of distance data for bootstrap/jacknife analysis of the tree robustness. Application in the RAPD analysis of the genus Frankelia. Folia Biol 45:97 99.
49. Petrov BM (1992) Mammals of Yugoslavia - Insectivores and Rodents. Natural History Museum, Supplementa 37, Belgrade.
50. Prieto C, Jara C, Mas A, Romero J (2007) Application of molecular methods for analysing the distribution and diversity of acetic acid bacteria in Chilean vineyards. Int J Food Microbiol 115:348 355.
51. Reutter BA, Nová P, Vogel P, Zima J (2001) Karyotypic variation between wood mouse species: banded chromosomes of Apodemus alpicola and A. microps. Acta Theriol 46:353 362.
52. Reutter BA. Petit E, Brünner H, Vogel P (2003) Cytochrome b haplotipe divergences in West European Apodemus. Mammal Biol 68:153 164.
53. Saitou N, Nei M (1987) The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406 425.
54. Serizawa K, Suzuki H, Tsuchiya K (2000) A phylogenetic view on species radiation in Apodemus inferred from variation of nuclear and mitochondrial genes. Biochem Genet 38:27 40.
55. Sommer RS, Nadachowski A (2006) Glacial refugia of mammals in Europe: evidence from fossil records. Mammal Rev 36:251 265.
56. Stépniak E, Zagalska MM, Świtoński M (2002) Use of RAPD technique in evolution studies of four species in the family Canidae. J Appl Genet 43:489 499.
57. Sumner AT (1972) A simple technique for demonstrating centromeric heterochromatin. Exp Cell Res 75:166 168.
58. Suzuki H, Sato JJ, Tsuchiya K, Luo J, Zhang Y-P, Wang Y-X, Jiang X-L (2003) Molecular phylogeny of wood mice (Apodemus, Muridae) in East Asia. Biol J Linnean Soc 80:469 481.
59. Todorović M, Mikeš M, Savić I (1971) Biometric Analysis of the Genus Apodemus in Vojvodina (Yugoslavia). In:Kratochvíl J, Obrtel R (eds Symposium Theriologicum II. Proceedings of the International Symposium on Species and Zoogeography of European Mammals, Brno 1971. Academia, Praha, pp 173 181.
60. Tyler KD, Wang G, Tyler SD, Johnson WM (1997) Factors affecting reliability and reproducibility of amplification-based DNA fingerprinting of representative bacterial pathogens. J Clin Microbiol 35:339 346.
61. Vidigal THDA, Dias Neto E, Spatz L, Nunes DN, Pires ER, Simpson AJG, Carvalho OS (1998) Genetic variability and identification of the intermediate snail hosts of Schisostoma mansoni. Mem Inst Oswaldo Cruz 93:103 110.
62. Vujošević M, Blagojević J (2004) B chromosomes in populations of mammals. Cytogenet Genome Res 106:247 256.
63. Vujošević M, Rimsa D, Živković S (1984) Patterns of G- and C-bands distribution on chromosomes of three Apodemus species. Z Saugetierkd 49:234 238.
64. Welsh J, McClelland M (1990) Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res 18:7213 7218.
65. Welsh J, Petersen C, McClelland M (1991) Polymorphisms generated by arbitrarily primed PCR in the mouse: application to strain identification and genetic mapping. Nucleic Acids Res 19:303 306.
66. Williams JGK, Kubelik AR, Levak KJ, Rafelsky JA, Tringey SV (1990) DNA polymorphism amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res 18:6531 6535.