메뉴 건너뛰기




Volumn 48, Issue 16, 2008, Pages 1695-1704

Adaptive evolution of cone opsin genes in two colorful cyprinids, Opsariichthys pachycephalus and Candidia barbatus

Author keywords

max; Nuptial coloration; Opsin gene; Reflectance spectra; Spectral shift

Indexed keywords

OPSIN; VISUAL PIGMENT;

EID: 46749109939     PISSN: 00426989     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.visres.2008.04.026     Document Type: Article
Times cited : (12)

References (68)
  • 2
    • 0034898019 scopus 로고    scopus 로고
    • Cone opsin genes of African cichlid fishes: Tuning spectral sensitivity by differential gene expression
    • Carleton K.L., and Kocher T.D. Cone opsin genes of African cichlid fishes: Tuning spectral sensitivity by differential gene expression. Molecular Biology and Evolution 18 (2001) 1540-1550
    • (2001) Molecular Biology and Evolution , vol.18 , pp. 1540-1550
    • Carleton, K.L.1    Kocher, T.D.2
  • 4
    • 0012441158 scopus 로고
    • A review of Opsariichthine cyprinid fishes
    • Chen Y.Y. A review of Opsariichthine cyprinid fishes. Oceanologia et Limnologia Sinica 13 (1982) 293-299
    • (1982) Oceanologia et Limnologia Sinica , vol.13 , pp. 293-299
    • Chen, Y.Y.1
  • 6
    • 0037296550 scopus 로고    scopus 로고
    • Gene duplication and spectral diversification of cone visual pigments of zebrafish
    • Chinen A., Hamaoka T., Yamada Y., and Kawamura S. Gene duplication and spectral diversification of cone visual pigments of zebrafish. Genetics 163 (2003) 663-675
    • (2003) Genetics , vol.163 , pp. 663-675
    • Chinen, A.1    Hamaoka, T.2    Yamada, Y.3    Kawamura, S.4
  • 7
    • 16344373736 scopus 로고    scopus 로고
    • Reconstitution of ancestral green visual pigments of zebrafish and molecular mechanism of their spectral differentiation
    • Chinen A., Matsumoto Y., and Kawamura S. Reconstitution of ancestral green visual pigments of zebrafish and molecular mechanism of their spectral differentiation. Molecular Biology and Evolution 22 (2005) 1001-1010
    • (2005) Molecular Biology and Evolution , vol.22 , pp. 1001-1010
    • Chinen, A.1    Matsumoto, Y.2    Kawamura, S.3
  • 8
    • 15744366405 scopus 로고    scopus 로고
    • Spectral differentiation of blue opsins between phylogenetically close but ecologically distant goldfish and zebrafish
    • Chinen A., Matsumoto Y., and Kawamura S. Spectral differentiation of blue opsins between phylogenetically close but ecologically distant goldfish and zebrafish. The Journal of Biological Chemistry 280 (2005) 9460-9466
    • (2005) The Journal of Biological Chemistry , vol.280 , pp. 9460-9466
    • Chinen, A.1    Matsumoto, Y.2    Kawamura, S.3
  • 10
    • 0037076530 scopus 로고    scopus 로고
    • Spectral tuning and evolution of short wave-sensitive cone pigments in cottoid fish from Lake Baikal
    • Cowing J.A., Poopalasundaram S., Wilkie S.E., Bowmaker J.K., and Hunt D.M. Spectral tuning and evolution of short wave-sensitive cone pigments in cottoid fish from Lake Baikal. Biochemistry 41 (2002) 6019-6025
    • (2002) Biochemistry , vol.41 , pp. 6019-6025
    • Cowing, J.A.1    Poopalasundaram, S.2    Wilkie, S.E.3    Bowmaker, J.K.4    Hunt, D.M.5
  • 11
    • 0036796409 scopus 로고    scopus 로고
    • The molecular mechanism for the spectral shifts between vertebrate ultraviolet- and violet-sensitive cone visual pigments
    • Cowing J.A., Poopalasundaram S., Wilkie S.E., Robinson P.R., Bowmaker J.K., and Hunt D.M. The molecular mechanism for the spectral shifts between vertebrate ultraviolet- and violet-sensitive cone visual pigments. Biochemical Society 367 (2002) 129-135
    • (2002) Biochemical Society , vol.367 , pp. 129-135
    • Cowing, J.A.1    Poopalasundaram, S.2    Wilkie, S.E.3    Robinson, P.R.4    Bowmaker, J.K.5    Hunt, D.M.6
  • 13
    • 0024347990 scopus 로고
    • The spectral transmission of freshwater teleost ocular media-An interspecific comparison and a guide to potential ultraviolet sensitivity
    • Douglas R.H., and McGuigan C.M. The spectral transmission of freshwater teleost ocular media-An interspecific comparison and a guide to potential ultraviolet sensitivity. Vision Research 29 (1989) 871-879
    • (1989) Vision Research , vol.29 , pp. 871-879
    • Douglas, R.H.1    McGuigan, C.M.2
  • 15
    • 0022376704 scopus 로고
    • Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
    • Hasegawa M., Kishino H., and Yano T. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. Journal of Molecular Evolution 22 (1985) 160-174
    • (1985) Journal of Molecular Evolution , vol.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 16
    • 0026022703 scopus 로고
    • Ultraviolet photoreception in carp: Microspectrophotometry and behaviorally determined action spectra
    • Hawryshyn C.W., and Harosi F.I. Ultraviolet photoreception in carp: Microspectrophotometry and behaviorally determined action spectra. Vision Research 31 (1991) 567-576
    • (1991) Vision Research , vol.31 , pp. 567-576
    • Hawryshyn, C.W.1    Harosi, F.I.2
  • 19
    • 0029922071 scopus 로고    scopus 로고
    • Spectral tuning and molecular evolution of rod visual pigments in the species flock of cottoid fish in Lake Baikal
    • Hunt D.M., Fitzgibbon J., Slobodyyanyuk S.J., and Bowmaker J.K. Spectral tuning and molecular evolution of rod visual pigments in the species flock of cottoid fish in Lake Baikal. Vision Research 36 (1996) 1217-1224
    • (1996) Vision Research , vol.36 , pp. 1217-1224
    • Hunt, D.M.1    Fitzgibbon, J.2    Slobodyyanyuk, S.J.3    Bowmaker, J.K.4
  • 20
    • 0035912892 scopus 로고    scopus 로고
    • Engineering a functional blue-wavelength-shifted rhodopsin mutant
    • Janz J.M., and Farrens D.L. Engineering a functional blue-wavelength-shifted rhodopsin mutant. Biochemistry 40 (2001) 7219-7227
    • (2001) Biochemistry , vol.40 , pp. 7219-7227
    • Janz, J.M.1    Farrens, D.L.2
  • 22
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16 (1980) 111-120
    • (1980) Journal of Molecular Evolution , vol.16 , pp. 111-120
    • Kimura, M.1
  • 23
    • 0023812745 scopus 로고
    • Application of an invariant spectral form to the visual pigments of crustaceans-implications regarding the binding of the chromophore
    • Lipetz L.E., and Cronin T.W. Application of an invariant spectral form to the visual pigments of crustaceans-implications regarding the binding of the chromophore. Vision Research 28 (1988) 1083-1093
    • (1988) Vision Research , vol.28 , pp. 1083-1093
    • Lipetz, L.E.1    Cronin, T.W.2
  • 24
    • 0028279102 scopus 로고
    • A third, ultraviolet-sensitive, visual pigment in the today-gecko (Gekko gekko)
    • Loew E.R. A third, ultraviolet-sensitive, visual pigment in the today-gecko (Gekko gekko). Vision Research 34 (1994) 1427-1431
    • (1994) Vision Research , vol.34 , pp. 1427-1431
    • Loew, E.R.1
  • 25
    • 0042570782 scopus 로고    scopus 로고
    • Crypsis and communication functions of UV-visible coloration in two coral reef damselfish, Dascyllus aruanus and D. reticulates
    • Losey G.S. Crypsis and communication functions of UV-visible coloration in two coral reef damselfish, Dascyllus aruanus and D. reticulates. Animal Behaviour 66 (2003) 299-307
    • (2003) Animal Behaviour , vol.66 , pp. 299-307
    • Losey, G.S.1
  • 27
    • 0022451582 scopus 로고
    • A unifying presentation of photopigment spectra
    • MacNichil E.F.J. A unifying presentation of photopigment spectra. Vision Research 26 (1986) 1543-1556
    • (1986) Vision Research , vol.26 , pp. 1543-1556
    • MacNichil, E.F.J.1
  • 28
    • 33645788379 scopus 로고    scopus 로고
    • Functional characterization of visual opsin repertoire in Medaka (Oryzias latipes)
    • Matsumoto Y., Fukamachi S., Mitani H., and Kawamura S. Functional characterization of visual opsin repertoire in Medaka (Oryzias latipes). Gene 371 (2006) 268-278
    • (2006) Gene , vol.371 , pp. 268-278
    • Matsumoto, Y.1    Fukamachi, S.2    Mitani, H.3    Kawamura, S.4
  • 29
    • 11844259419 scopus 로고    scopus 로고
    • Molecular cloning of cone opsin genes and their expression in the retina of a smelt, Ayu (Plecoglossus altivelis, Teleostei)
    • Minamoto T., and Shimizu I. Molecular cloning of cone opsin genes and their expression in the retina of a smelt, Ayu (Plecoglossus altivelis, Teleostei). Comparative Biochemistry and Physiology. Part B, Biochemistry & Molecular Biology 140 (2005) 197-205
    • (2005) Comparative Biochemistry and Physiology. Part B, Biochemistry & Molecular Biology , vol.140 , pp. 197-205
    • Minamoto, T.1    Shimizu, I.2
  • 30
    • 0037076084 scopus 로고    scopus 로고
    • Isomer-specific interaction of the retinal chromophore with threonine-118 in rhodopsin
    • Nagata T., Oura T., Terakita A., Kandori H., and Shichida Y. Isomer-specific interaction of the retinal chromophore with threonine-118 in rhodopsin. Journal of Physical Chemistry A 106 (2002) 1969-1975
    • (2002) Journal of Physical Chemistry A , vol.106 , pp. 1969-1975
    • Nagata, T.1    Oura, T.2    Terakita, A.3    Kandori, H.4    Shichida, Y.5
  • 31
    • 0025162902 scopus 로고
    • Determinants of visual pigment absorbance identification of the retinylidene Schiff's base counterion in bovine rhodopsin
    • Nathans J. Determinants of visual pigment absorbance identification of the retinylidene Schiff's base counterion in bovine rhodopsin. Biochemistry 29 (1990) 9746-9752
    • (1990) Biochemistry , vol.29 , pp. 9746-9752
    • Nathans, J.1
  • 32
    • 0025012994 scopus 로고
    • Determinants of visual pigment absorbance role of charged amino acids in the putative transmembrane segments
    • Nathans J. Determinants of visual pigment absorbance role of charged amino acids in the putative transmembrane segments. Biochemistry 29 (1990) 937-942
    • (1990) Biochemistry , vol.29 , pp. 937-942
    • Nathans, J.1
  • 33
    • 0022388713 scopus 로고
    • Larval and adult visual pigments of the zebrafish, Brachydanio rerio
    • Nawrocki L., Bremiller R., Streisinger G., and Kapla M. Larval and adult visual pigments of the zebrafish, Brachydanio rerio. Vision Research 25 (1985) 1569-1576
    • (1985) Vision Research , vol.25 , pp. 1569-1576
    • Nawrocki, L.1    Bremiller, R.2    Streisinger, G.3    Kapla, M.4
  • 34
    • 19344364246 scopus 로고    scopus 로고
    • Convergent loss of an anciently duplicated, functionally divergent RH2 opsin gene in the fugu and Tetraodon pufferfish lineages
    • Neafsey D.E., and Hartl D.L. Convergent loss of an anciently duplicated, functionally divergent RH2 opsin gene in the fugu and Tetraodon pufferfish lineages. Gene 350 (2005) 161-171
    • (2005) Gene , vol.350 , pp. 161-171
    • Neafsey, D.E.1    Hartl, D.L.2
  • 35
    • 0003728605 scopus 로고
    • John Wiley & Sons, Inc, New York p. 630
    • Nelson J.S. Fishes of the world (1994), John Wiley & Sons, Inc, New York p. 630
    • (1994) Fishes of the world
    • Nelson, J.S.1
  • 38
    • 26244445167 scopus 로고    scopus 로고
    • Mix and match color vision: Tuning spectral sensitivity by differential opsin gene expression in Lake Malawi cichlids
    • Parry J.W.L., Carleton K.L., Spady T., Carboo A., Hunt D.M., and Bowmaker J.K. Mix and match color vision: Tuning spectral sensitivity by differential opsin gene expression in Lake Malawi cichlids. Current Biology 15 (2005) 1734-1739
    • (2005) Current Biology , vol.15 , pp. 1734-1739
    • Parry, J.W.L.1    Carleton, K.L.2    Spady, T.3    Carboo, A.4    Hunt, D.M.5    Bowmaker, J.K.6
  • 40
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: Testing the model of DNA substitution
    • Posada D., and Crandall K.A. Modeltest: Testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 42
    • 0031742491 scopus 로고    scopus 로고
    • Theoretical and experimental approaches to improve the accuracy of particulate absorption coefficients derived from the quantitative filter technique
    • Roesler C.S. Theoretical and experimental approaches to improve the accuracy of particulate absorption coefficients derived from the quantitative filter technique. Limnology and Oceanography 43 (1998) 1649-1660
    • (1998) Limnology and Oceanography , vol.43 , pp. 1649-1660
    • Roesler, C.S.1
  • 43
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou L., and Nei M. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4 (1987) 406-425
    • (1987) Molecular Biology and Evolution , vol.4 , pp. 406-425
    • Saitou, L.1    Nei, M.2
  • 47
    • 0035054406 scopus 로고    scopus 로고
    • Ocular media transmission of coral reef fish-Can coral reef fish see ultraviolet light?
    • Siebeck U.E., and Marshall N.J. Ocular media transmission of coral reef fish-Can coral reef fish see ultraviolet light?. Vision Research 41 (2001) 133-149
    • (2001) Vision Research , vol.41 , pp. 133-149
    • Siebeck, U.E.1    Marshall, N.J.2
  • 48
    • 0032788233 scopus 로고    scopus 로고
    • The photoreceptors and visual pigments in the retina of a boid snake, the ball python (Python regius)
    • Sillman A.J., Carver J.K., and Loew E.R. The photoreceptors and visual pigments in the retina of a boid snake, the ball python (Python regius). The Journal of Experimental Biology 202 (1999) 1931-1938
    • (1999) The Journal of Experimental Biology , vol.202 , pp. 1931-1938
    • Sillman, A.J.1    Carver, J.K.2    Loew, E.R.3
  • 49
  • 51
    • 0004248459 scopus 로고    scopus 로고
    • Sinauer Associates, Sunderland, Massachusetts
    • *and other methods) (2000), Sinauer Associates, Sunderland, Massachusetts
    • (2000) *and other methods)
    • Swofford, D.L.1
  • 52
    • 0012394062 scopus 로고    scopus 로고
    • Molecular basis of spectral tuning in the newt short wavelength sensitive visual pigment
    • Takahashi Y., and Ebrey T.G. Molecular basis of spectral tuning in the newt short wavelength sensitive visual pigment. Biochemistry 42 (2003) 6025-6034
    • (2003) Biochemistry , vol.42 , pp. 6025-6034
    • Takahashi, Y.1    Ebrey, T.G.2
  • 53
    • 32544455269 scopus 로고    scopus 로고
    • Genetic basis of spectral tuning in the violet-sensitive visual pigment of African clawed frog, Xenopus laevis
    • Takahashi Y., and Yokoyama S. Genetic basis of spectral tuning in the violet-sensitive visual pigment of African clawed frog, Xenopus laevis. Genetics 171 (2005) 1153-1160
    • (2005) Genetics , vol.171 , pp. 1153-1160
    • Takahashi, Y.1    Yokoyama, S.2
  • 54
    • 34447540212 scopus 로고    scopus 로고
    • Mechanisms of spectral tuning in the RH2 pigments of Tokay gecko and American chameleon
    • Takenaka N., and Yokoyama S. Mechanisms of spectral tuning in the RH2 pigments of Tokay gecko and American chameleon. Gene 399 (2007) 26-32
    • (2007) Gene , vol.399 , pp. 26-32
    • Takenaka, N.1    Yokoyama, S.2
  • 55
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22 (1994) 4673-4680
    • (1994) Nucleic Acids Research , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 57
    • 0000315750 scopus 로고
    • Distribution of the freshwater fishes of Taiwan
    • Tzeng C.S. Distribution of the freshwater fishes of Taiwan. Journal of Taiwan Museum 39 (1986) 127-146
    • (1986) Journal of Taiwan Museum , vol.39 , pp. 127-146
    • Tzeng, C.S.1
  • 58
    • 33750993474 scopus 로고    scopus 로고
    • Molecular evidence for the monophyly of East Asian groups of Cyprinidae (Teleostei: Cypriniformes) derived from the nuclear recombination activating gene 2 sequences
    • Wang X.H., Li C.F., and He S.P. Molecular evidence for the monophyly of East Asian groups of Cyprinidae (Teleostei: Cypriniformes) derived from the nuclear recombination activating gene 2 sequences. Molecular Phylogenetics and Evolution 42 (2007) 157-170
    • (2007) Molecular Phylogenetics and Evolution , vol.42 , pp. 157-170
    • Wang, X.H.1    Li, C.F.2    He, S.P.3
  • 59
    • 0028814603 scopus 로고
    • The reproductive biology of an endemic cyprinid, Zacco pachycephalus, in Taiwan
    • Wang J.T., Liu M.C., and Fang L.S. The reproductive biology of an endemic cyprinid, Zacco pachycephalus, in Taiwan. Environmental Biology of Fishes 43 (1995) 135-143
    • (1995) Environmental Biology of Fishes , vol.43 , pp. 135-143
    • Wang, J.T.1    Liu, M.C.2    Fang, L.S.3
  • 60
    • 34547110350 scopus 로고    scopus 로고
    • New insights on molecular systematics of opsariichthines based on cytochrome b sequencing
    • Wang H.Y., Wang C.F., Du S.Y., and Lee S.C. New insights on molecular systematics of opsariichthines based on cytochrome b sequencing. Journal of Fish Biology 71 (2007) 18-32
    • (2007) Journal of Fish Biology , vol.71 , pp. 18-32
    • Wang, H.Y.1    Wang, C.F.2    Du, S.Y.3    Lee, S.C.4
  • 62
    • 0034002482 scopus 로고    scopus 로고
    • Molecular evolution of vertebrate visual pigments
    • Yokoyama S. Molecular evolution of vertebrate visual pigments. Progress in Retinal and Eye Research 9 (2000) 385-419
    • (2000) Progress in Retinal and Eye Research , vol.9 , pp. 385-419
    • Yokoyama, S.1
  • 63
    • 0037202369 scopus 로고    scopus 로고
    • Molecular evolution of color vision in vertebrates
    • Yokoyama S. Molecular evolution of color vision in vertebrates. Gene 300 (2002) 68-79
    • (2002) Gene , vol.300 , pp. 68-79
    • Yokoyama, S.1
  • 64
    • 2642608655 scopus 로고    scopus 로고
    • The "Five-Sites" rule and the evolution of red and green color vision in mammals
    • Yokoyama S., and Radlwimmer F.B. The "Five-Sites" rule and the evolution of red and green color vision in mammals. Molecular Biology and Evolution 15 (1998) 560-567
    • (1998) Molecular Biology and Evolution , vol.15 , pp. 560-567
    • Yokoyama, S.1    Radlwimmer, F.B.2
  • 65
    • 34249280953 scopus 로고    scopus 로고
    • A novel spectral tuning in the short wavelength-sensitive (SWS1 and SWS2) pigments of bluefin killifish (Lucania goodei)
    • Yokoyama S., Takenaka N., and Blow N. A novel spectral tuning in the short wavelength-sensitive (SWS1 and SWS2) pigments of bluefin killifish (Lucania goodei). Gene 396 (2007) 196-202
    • (2007) Gene , vol.396 , pp. 196-202
    • Yokoyama, S.1    Takenaka, N.2    Blow, N.3
  • 66
    • 0030484359 scopus 로고    scopus 로고
    • Adaptive evolution of photoreceptors and visual pigments in vertebrates
    • Yokoyama S., and Yokoyama R. Adaptive evolution of photoreceptors and visual pigments in vertebrates. Annual Review of Ecology and Systematics 27 (1996) 543-567
    • (1996) Annual Review of Ecology and Systematics , vol.27 , pp. 543-567
    • Yokoyama, S.1    Yokoyama, R.2
  • 68
    • 0024362631 scopus 로고
    • Effect of carboxylic acid side chains on the absorption maximum of visual pigments
    • Zhukovsky E.A., and Oprian D.D. Effect of carboxylic acid side chains on the absorption maximum of visual pigments. Science 246 (1989) 928-930
    • (1989) Science , vol.246 , pp. 928-930
    • Zhukovsky, E.A.1    Oprian, D.D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.