Calcium ions are involved in the unusual red shift of the light-harvesting 1 Qy transition of the core complex in thermophilic purple sulfur bacterium Thermochromatium tepidum

Journal of Biological Chemistry

Volumn 283, Issue 20, 2008, Pages 13867-13873

  Kimura, Yukihiro ^a,c   Hirano, Yu ^a   Yu, Long Jiang ^a   Suzuki, Hiroaki ^a   Kobayashi, Masayuki ^b   Wang, Zheng Yu ^a  

^a IBARAKI UNIVERSITY   (Japan)

^b ARIAKE NATIONAL COLLEGE OF TECHNOLOGY   (Japan)

^c KOBE UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ABSORPTION; AMINATION; AMINES; AMINO ACIDS; ASTROPHYSICS; BINDING ENERGY; BIOCHEMISTRY; CALCIUM; DOPPLER EFFECT; HARVESTING; METAL RECOVERY; METAL REFINING; ORGANIC ACIDS; PORT TERMINALS; POSITIVE IONS; SULFUR; VOLUMETRIC ANALYSIS;

ACIDIC AMINO ACIDS; AMINO ACID SEQUENCES; BINDING CONSTANTS; BINDING PROTEINS; BLUE SHIFTS; CALCIUM IONS; CONFORMATIONAL CHANGES; CORE COMPLEXES; HARVESTING COMPLEXES; HIGH AFFINITIES; ISOTHERMAL TITRATION CALORIMETRIES; MEMBRANE INTERFACES; MESOPHILIC COUNTERPARTS; METAL CATIONS; REACTION CENTERS; RED SHIFTS; STOICHIOMETRIC RATIOS; TERMINAL REGIONS; TIME CONSTANTS;

BINDING SITES;

AMINO ACID; CALCIUM ION; POLYPEPTIDE; CALCIUM; CATION; EDETIC ACID; ION;

ARTICLE; BACTERIAL GROWTH; CONFORMATIONAL TRANSITION; ISOTHERMAL TITRATION CALORIMETRY; LIGHT ABSORPTION; LIGHT HARVESTING SYSTEM; NONHUMAN; PRIORITY JOURNAL; RED SHIFT; SPECTROSCOPY; STOICHIOMETRY; SULFUR BACTERIUM; THERMOCHROMATIUM TEPIDUM; THERMOPHILIC BACTERIUM; AMINO ACID SEQUENCE; BINDING SITE; BIOLOGICAL MODEL; CHEMISTRY; CHROMATIACEAE; CIRCULAR DICHROISM; COMPUTER PROGRAM; METABOLISM; MOLECULAR GENETICS; PROTEIN BINDING; SPECTROPHOTOMETRY; THERMODYNAMICS;

BACTERIA (MICROORGANISMS); THERMOCHROMATIUM TEPIDUM;

AMINO ACID SEQUENCE; BINDING SITES; CALCIUM; CATIONS; CHROMATIACEAE; CIRCULAR DICHROISM; EDETIC ACID; IONS; LIGHT-HARVESTING PROTEIN COMPLEXES; MODELS, BIOLOGICAL; MOLECULAR SEQUENCE DATA; PROTEIN BINDING; SOFTWARE; SPECTROPHOTOMETRY; THERMODYNAMICS;

EID: 46649111231     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M800256200     Document Type: Article

References (49)

1. Madigan, M. T. (1984) Science 225, 313-315
2. Madigan, M. T. (2003) Photosynth. Res. 76, 157-171
3. Nogi, T., Fathir, I., Kobayashi, M., Nozawa, T., and Miki, K. (2000) Proc. Natl. Acad. Sci. U. S. A. 97, 13561-13566
4. Deisenhofer, J., Epp, O., Miki, K., Huber, R., and Michel, H. (1984) J. Mol. Biol. 180, 385-398
5. Allen, J. P., Feher, G., Yeates, T. O., Komiya, H., and Rees, D. C. (1987) Proc. Natl. Acad. Sci. U. S. A. 84, 5730-5734
6. Fathir, I., Ashikaga, M., Tanaka, K., Katano, T., Nirasawa, T., Kobayashi, M., Wang, Z.-Y., and Nozawa, T. (1998) Photosynth. Res. 58, 193-202
7. Wang, Z.-Y., Shimonaga, M., Suzuki, H., Kobayashi, M., and Nozawa, T. (2003) Photosynth. Res. 78, 133-141
8. Nozawa, T., Fukuda, T., Hatano, M., and Madigan, M. T. (1986) Biochim. Biophys. Acta 852, 191-197
9. Kramer, H., and Amesz, J. (1996) Photosynth. Res. 49, 237-244
10. McDermott, G., Prince, D. M., Freer, A. A., Hawthornthwaite-Lawless, A. M., Papiz, M. Z., Cogdell, R. J., and Isaac, N. W. (1995) Nature 374, 517-521
11. Koepke, J., Hu, X., Muenke, C., Schulten, K., and Michel, H. (1996) Structure 4, 581-597
12. McLuskey, K., Prince, S. M., Cogdell, R. J., and Isaac, N. W. (2001) Biochemistry 40, 8783-8789
13. Allen, J. P., Feher, G., Yeates, T. O., Rees, D. C., Deisenhofer, J., Michel, H., and Huber, R. (1986) Proc. Natl. Acad. Sci. U. S. A. 83, 8589-8593
14. Karrasch, S., Bullough, P. A., and Ghosh, R. (1995) EMBO J. 14, 631-638
15. Jungas, C., Ranck, J.-L., Rigaud, J.-L., Joliot, P., and Vermeglio, A. (1999) EMBO J. 18, 534-542
16. Jamieson, S. J., Wang, P., Qian, P., Kirkland, J. Y., Conroy, M. J., Hunter, C. N., and Bullough, P. A. (2002) EMBO J. 21, 3927-3935
17. Roszak, A. W., Howard, T. D., Southall, J., Gardiner, A. T., Law, C. J., Isaac, N. W., and Cogdell, R. J. (2003) Science 302, 1969-1972
18. Scheuring, S., Seguin, J., Marco, S., Levy, D., Robert, B., and Rigaud, J.-L. (2003) Proc. Natl. Acad. Sci. U. S. A. 100, 1690-1693
19. Scheuring, S., Francia, F., Busselez, J., Melandris, B. A., Rigaud, J.-L., and Levy, D. (2004) J. Biol. Chem. 279, 3620-3626
20. Qian, P., Hunter, C. N., and Bullough, P. A. (2005) J. Mol. Biol. 349, 948-960
21. Suzuki, H., Hirano, Y., Kimura, Y., Takaichi, S., Kobayashi, M., Miki, K., and Wang, Z.-Y. (2007) Biochim. Biophys. Acta 1767, 1057-1063
22. Kobayashi, M., Fujioka, Y., Mori, T., Terashima, M., Suzuki, H., Shimada, Y., Saito, T., Wang, Z.-Y., and Nozawa, T. (2005) Biosci. Biotechnol. Biochem. 69, 1130-1136
23. Permentier, H. P., Neerken, S., Overmann, J., and Amesz, J. (2001) Biochemistry 40, 5573-5578
24. Glaeser, J., and Overmann, J. (1999) Arch. Microbiol. 171, 405-416
25. Tuschat, C., Beatty, J. T., and Overmann, J. (2004) Photosynth. Res. 81, 181-199
26. Fowler, G. J. S., Visschers, R. W., Grief, G. G., van Grondelle, R., and Hunter, C. N. (1992) Nature 355, 848-850
27. Olsen, J. D., Sockalingum, G. D., Robert, B., and Hunter, C. N. (1994) Proc. Natl. Acad. Sci. U. S. A. 91, 7124-7128
28. Sturgis, J. N., Jirsakova, V., Reiss-Husson, F., Cogdell, R. J., and Robert, B. (1995) Biochemistry 34, 517-523
29. Cogdell, R. J., Howard, T. D., Isaac, N. W., McLuskey, K., and Gardiner, A. T. (2002) Photosynth. Res. 74, 135-141
30. Clayton, R. K., and Clayton, B. J. (1981) Proc. Natl. Acad. Sci. U. S. A. 78, 5583-5587
31. Schwarz, F. P., Puri, K. D., Bhat, R. G., and Surolia, A. (1993) J. Biol. Chem. 268, 7668-7677
32. Ogawa, Y., and Tanokura, M. (1986) J. Biochem. 99, 81-89
33. Georgakopoulou, S., van Grondelle, R., and van der Zwan, G. (2006) J. Phys. Chem. B 110, 3344-3353
34. Georgakopoulou, S., van Grondelle, R., and van der Zwan, G. (2006) J. Phys. Chem. B 110, 3354-3361
35. Grabarek, Z. (2006) J. Mol. Biol. 359, 509-525
36. Yamniuk, A. P., Nguyen, L. T., Hoang, T. T., and Vogel, H. J. (2004) Biochemistry 43, 2558-2568
37. Ogawa, Y., and Tanokura, M. (1984) J. Biochem. 95, 19-28
38. Tanokura, M., and Yamada, K. (1984) J. Biochem. 95, 643-649
39. Milos, M., Schaer, J.-J., Comte, M., and Cox, J. A. (1986) Biochemistry 25, 6279-6287
40. Tanokura, M., and Yamada, K. (1993) J. Biol. Chem. 268, 7090-7092
41. Potter, J. D., Hsu, F.-J., and Pownall, H. J. (1977) J. Biol. Chem. 252, 2452-2454
42. Yamada, K., and Kometani, K. (1982) J. Biochem. 92, 1505-1517
43. Imaizumi, M., Tanokura, M., and Yamada, K. (1987) J. Biol. Chem. 262, 7963-7966
44. Tanokura, M., Imaizumi, M., and Yamada, K. (1986) FEBS Lett. 209, 77-82
45. Tanokura, M., and Yamada, K. (1987) Biochemistry 26, 7668-7674
46. Klee, C. B. (1977) Biochemistry 16, 1017-1024
47. Wolff, D. J., Poirier, P. G., Brostrom, C. O., and Brostrom, M. A. (1977) J. Biol. Chem. 252, 4108-4117
48. Cox, J. A., Ferraz, C., Demaile, J. G., Perez, R. O., van Tuinen, D., and Marme, D. (1982) J. Biol. Chem. 257, 10694-10700
49. Dudev, T., and Lim, C. (2007) Acc. Chem. Res. 40, 85-93