Mesoscopic Monte Carlo simulations of stochastic encounters between photoactivated rhodopsin and transducin in disc membranes

Journal of Physical Chemistry B

Volumn 112, Issue 14, 2008, Pages 4419-4426

  Dell'Orco, Daniele ^a,b   Schmidt, Henning ^c  

^a UNIVERSITY OF MODENA AND REGGIO EMILIA   (Italy)

^b DULBECCO TELETHON INSTITUTE   (Italy)

^c UNIVERSITY OF ROSTOCK   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

COSMIC RAY DETECTORS; DIMERS; METALLIC MATRIX COMPOSITES; MOLECULES; MONTE CARLO METHODS; OLIGOMERS; STOCHASTIC PROGRAMMING; SUPERCONDUCTING MATERIALS; TIME MEASUREMENT;

AMERICAN CHEMICAL SOCIETY (ACS); CROWDING EFFECTS; DIFFUSION COEFFICIENTS; HIGH-DENSITY; KINETIC (POLYM.); MEMBRANE PATCH; MESOSCOPIC; MOLECULAR ORGANIZATIONS; MOLECULAR SIZES; MONTE CARLO (MC); MONTE CARLO SIMULATION (MCS); OUTER SEGMENTS (OS); PHOTORESPONSE (PR); PHOTOTRANSDUCTION; RHODOPSIN (RHO); STRUCTURAL ORGANIZATIONS; STRUCTURAL UNITS; TEMPORAL RESPONSES; TRANSDUCIN;

PHOTOACOUSTIC EFFECT;

RHODOPSIN; TRANSDUCIN;

ALGORITHM; ANIMAL; ARTICLE; BIOLOGICAL MODEL; CHEMISTRY; DIFFUSION; MEMBRANE; MONTE CARLO METHOD; PHOTOTRANSDUCTION; RETINA ROD OUTER SEGMENT; STATISTICS; ULTRASTRUCTURE;

ALGORITHMS; ANIMALS; DIFFUSION; MEMBRANES; MODELS, BIOLOGICAL; MONTE CARLO METHOD; PHOTOTRANSDUCTION; RHODOPSIN; ROD OUTER SEGMENTS; STOCHASTIC PROCESSES; TRANSDUCIN;

EID: 46449137096     PISSN: 15206106     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp709963f     Document Type: Article

References (37)

1. Baylor, D. A.; Lamb, T. D.; Yau, K. W. J. Physiol. 1979, 288, 613.
2. Kahlert, M.; Hofmann, K. P. Biophys. J. 1991, 59, 375.
3. Lamb, T. D.; Pugh, E. N., Jr. J. Physiol. 1992, 449, 719.
4. Pugh, E. N., Jr.; Lamb, T. D. Biochim. Biophys. Acta 1993, 1141, 111.
5. Pugh, E. N., Jr.; Lamb, T. D. Phototransduction in Vertebrate Rods and Cones: Molecular Mechanisms of Amplification, Recovery and Light Adaptation; Elsevier Science B.V.: Amsterdam/New York, 2000; Vol. 3.
6. Felber, S.; Breuer, H. P.; Petruccione, F.; Honerkamp, J.; Hofmann, K. P. Biophys. J. 1996, 71, 3051.
7. Lamb, T. D. Biophys. J. 1994, 67, 1439.
8. Lamb, T. D. Proc. Natl Acad. Sci. U.S.A. 1996, 93, 566.
9. Laitko, U.; Hofmann, K. P. Biophys. J. 1998, 74, 803.
10. Hamer, R. D.; Nicholas, S. C.; Tranchina, D.; Lamb, T. D.; Jarvinen, J. L. Visual Neurosci. 2005, 22, 417.
11. Hamer, R. D.; Nicholas, S. C.; Tranchina, D.; Liebman, P. A.; Lamb, T. D. J. Gen. Physiol. 2003, 122, 419.
12. Palczewski, K.; Kumasaka, T.; Hori, T.; Behnke, C. A.; Motoshima, H.; Fox, B. A.; Le Trong, I.; Teller, D. C.; Okada, T.; Stenkamp, R. E.; Yamamoto, M.; Miyano, M. Science 2000, 289, 739.
13. Cherezov, V.; Rosenbaum, D. M.; Hanson, M. A.; Rasmussen, S. G.; Thian, F. S.; Kobilka, T. S.; Choi, H. J.; Kuhn, P.; Weis, W. I.; Kobilka, B. K.; Stevens, R. C. Science 2007, 318 (5854), 1258-65.
14. Fanelli, F.; De Benedetti, P. G. Chem. Rev. 2005, 105, 3297.
15. Chabre, M.; Cone, R.; Saibil, H. Nature 2003, 426, 30.
16. Fotiadis, D.; Liang, Y.; Filipek, S.; Saperstein, D. A.; Engel, A.; Palczewski, K. Nature 2003, 421, 127.
17. Liang, Y.; Fotiadis, D.; Filipek, S.; Saperstein, D. A.; Palczewski, K.; Engel, A. J. Biol Chem. 2003, 278, 21655.
18. Cone, R. A. Nat. New Biol. 1972, 236, 39.
19. Liebman, P. A.; Entine, G. Science 1974, 185, 457.
20. Liebman, P. A.; Weiner, H. L.; Drzymala, R. E. Methods Enzymol. 1982, 81, 660.
21. Bruckert, F.; Chabre, M.; Vuong, T. M. Biophys. J. 1992, 63, 616.
22. Norisuye, T.; Hoffman, W. F.; Yu, H. Biochemistry 1976, 15, 5678.
23. Okada, T.; Sugihara, M.; Bondar, A. N.; Elstner, M.; Entel, P.; Buss, V. J. Mol. Biol. 2004, 342, 571.
24. Lambright, D. G.; Sondek, J.; Bohm, A.; Skiba, N. P.; Hamm, H. E.; Sigler, P. B. Nature 1996, 379, 311.
25. Dell'Orco, D.; Seeber, M.; Fanelli, F. FEBS Lett. 2007, 581, 944.
26. Nickell, S.; Park, P. S.; Baumeister, W.; Palczewski, K. J. Cell Biol. 2007, 177, 917.
27. Saxton, M. J.; Owicki, J. C Biochim. Biophys. Acta 1989, 979, 27.
28. Calvert, P. D.; Govardovskii, V. I.; Krasnoperova, N.; Anderson, R. E.; Lem, J.; Makino, C. L. Nature 2001, 411, 90.
29. Lamb, T. D.; Pugh, E. N., Jr. Trends Neurosci. 1992, 15, 291.
30. Gupta, B. D.; Williams, T. P. J. Physiol. 1990, 430, 483.
31. Hamm, H. E.; Bownds, M. D. Biochemistry 1986, 25, 4512.
32. Kerov, V.; Rubin, W. W.; Natochin, M.; Melling, N. A.; Burns, M. E.; Artemyev, N. O. J. Neurosci. 2007, 27, 10270.
33. Lamb, T. D.; Pugh, E. N., Jr. Prog. Retin. Eye Res. 2004, 23, 307.
34. Lamb, T. D.; Pugh, E. N., Jr. Invest. Ophthalmol Visual Sci. 2006, 47, 5137.
35. Jastrzebska, B.; Fotiadis, D.; Jang, G. F.; Stenkamp, R. E.; Engel, A.; Palczewski, K. J. Biol. Chem. 2006, 281, 11917.
36. Fanelli, F.; Dell'Orco, D. Biochemistry 2005, 44, 14695.
37. Niu, S. L.; Mitchell, D. C. Biophys. J. 2005, 89, 1833.