Association of spin-labeled lipids with β-barrel proteins from the outer membrane of Escherichia coli

Biochemistry

Volumn 43, Issue 37, 2004, Pages 11630-11636

  Ramakrishnan, Muthu ^a   Pocanschi, Cosmin L ^b   Kleinschmidt, Jörg H ^b   Marsh, Derek ^a  

^a MAX PLANCK INSTITUTE FOR BIOPHYSICAL CHEMISTRY   (Germany)

^b UNIVERSITY OF KONSTANZ   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ALCOHOLS; BIOLOGICAL MEMBRANES; CELLS; LIPIDS; PARAMAGNETIC RESONANCE; STOICHIOMETRY;

INTEGRAL PROTEINS; LIPID SELECTIVITY; SPIN-LEBELED LIPIDS; TRANSMEMBRANES (TM);

PROTEINS;

BACTERIAL PROTEIN; BETA BARREL PROTEIN; DIMYRISTOYLPHOSPHATIDYLGLYCEROL; FERRICHROME; FERRICHROME IRON RECEPTOR FHUA; LIPID; MEMBRANE PROTEIN; OUTER MEMBRANE PROTEIN; OUTER MEMBRANE PROTEIN A; PHOSPHATIDYLGLYCEROL; PHOSPHOLIPID; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL OUTER MEMBRANE; ELECTRON SPIN RESONANCE; ESCHERICHIA COLI; NONHUMAN; PRIORITY JOURNAL; PROTEIN LIPID INTERACTION; SPIN LABELING; STOICHIOMETRY; TEMPERATURE DEPENDENCE;

BACTERIAL OUTER MEMBRANE PROTEINS; ELECTRON SPIN RESONANCE SPECTROSCOPY; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; LIPID BILAYERS; LIPID METABOLISM; LIPIDS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; RECEPTORS, VIRUS; SPIN LABELS; TEMPERATURE;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; NEGIBACTERIA;

EID: 4644327779     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi048858e     Document Type: Article

References (38)

1. Marsh, D. (1989) Experimental methods in spin-label spectral analysis, in Biological Magnetic Resonance (Berliner, L. J., and Reuben, J., Eds.) Vol. 8, pp 255-303, Plenum Publishing Corp., New York.
2. Marsh, D., and Horváth, L. I. (1989) Spin-label studies of the structure and dynamics of lipids and proteins in membranes, in Advanced EPR. Applications in Biology and Biochemistry (Hoff, A. J., Ed.) pp 707-752, Elsevier, Amsterdam.
3. Marsh, D., and Horváth, L. I. (1998) Structure, dynamics and composition of the lipid-protein interface. Perspectives from spin-labelling, Biochim. Biophys. Acta 1376, 267-296.
4. Marsh, D., and Páli, T. (2004) The protein-lipid interface: perspectives from magnetic resonance and crystal structures, Biochim. Biophys. Acta (accepted for publication).
5. + channel-associated peptide in a lipid bilayer: conformation, lipid-protein interactions, and rotational diffusion, Biochemistry 34, 3893-3898.
6. + channel-associated peptide in the β-conformation: spin label electron spin resonance studies, Biophys. J. 73, 2588-2594.
7. Wolfs, C. J. A. M., Horváth, L. I., Marsh, D., Watts, A., and Hemminga, M. A. (1989) Spin-label ESR of bacteriophage M13 coat protein in mixed lipid bilayers. Characterization of molecular selectivity of charged phospholipids for the bacteriophage coat protein in lipid bilayers, Biochemistry 28, 9995-10001.
8. Lee, A. G. (2003) Lipid-protein interactions in biological membranes: a structural perspective, Biochim. Biophys. Acta 1612, 1-40.
9. Pautsch, A., and Schulz, G. E. (2000) High-resolution structure of the OmpA membrane domain, J. Mol. Biol. 298, 273-282.
10. Ferguson, A. D., Hofmann, E., Coulton, J. W., Diederichs, K., and Welte, W. (1998) Siderophore-mediated iron transport: crystal structure of FhuA with bound lipopolysaccharide, Science 282, 2215-2220.
11. Surrey, T., and Jähnig, F. (1992) Refolding and oriented insertion of a membrane protein into a lipid bilayer, Proc. Natl. Acad. Sci U.S.A. 89, 7457-7461.
12. Ferguson, A. D., Breed, J., Diederichs, K., Weite, W., and Coulton, J. W. (1998) An internal affinity-tag for purification and crystallization of the siderophore receptor FhuA, integral outer membrane protein from Escherichia coli K-12, Protein Sci. 7, 1636-1638.
13. Hubbell, W. L., and McConnell, H. M. (1971) Molecular motion in spin-labeled phospholipids and membranes, J. Am. Chem. Soc. 93, 314-326.
14. Marsh, D., and Watts, A. (1982) Spin-labeling and lipid-protein interactions in membranes, in Lipid-Protein Interactions (Jost, P. C., and Griffith, O. H., Eds.) Vol. 2, pp 53-126, Wiley-Interscience, New York.
15. Kleinschmidt, J. H., Wiener, M. C., and Tamm, L. K. (1999) Outer membrane protein A of E. coli folds into detergent micelles, but not in the presence of monomeric detergent, Protein Sci. 8, 2065-2071.
16. Laemmli, U. K. (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4, Nature (London) 227, 680-685.
17. Rouser, G., Fleischer, S., and Yamamoto, A. (1970) Two dimensional thin layer Chromatographic separation of polar lipids and determination of phospholipids by phosphorus analysis of spots, Lipids 5, 494-496.
18. Lowry, O. H., Rosebrough, N. J., Farr, L., and Randall, R. J. (1951) Protein measurement with the Folin phenol reagent, J. Biol. Chem. 193, 265-275.
19. Marsh, D. (1982) Electron spin resonance: spin label probes, in Techniques in Lipid and Membrane Biochemistry (Metcalfe, J. C., and Hesketh, T. R., Eds.) Vol. B4/II, pp B426-1-B426/44, Elsevier, Amsterdam.
20. Marsh, D. (1981) Electron spin resonance: spin labels, in Membrane Spectroscopy. Molecular Biology, Biochemistry and Biophysics (Grell, E., Ed.) Vol. 31, pp 51-142, Springer-Verlag, Berlin, Heidelberg, and New York.
21. Brotherus, J. R., Griffith, O. H., Brotherus, M. O., Jost, P. C., Silvius, J. R., and Hokin, L. E. (1981) Lipid-protein multiple binding equilibria in membranes, Biochemistry 20, 5261-5267.
22. Marsh, D. (1985) ESR spin label studies of lipid-protein interactions, in Progress in Protein-Lipid Interactions (Watts, A., and de Pont, J. J. H. H. M., Eds.) Vol. 1, pp 143-172, Elsevier, Amsterdam.
23. Marsh, D. (1997) Stoichiometry of lipid-protein interaction and integral membrane protein structure, Eur. Biophys. J. 26, 203-208.
24. Fraser, R. D. B., and MacRae, T. P. (1973) Conformation in Fibrous Proteins and Related Synthetic Peptides, Academic Press, New York.
25. Páli, T., and Marsh, D. (2001) Tilt, twist and coiling in β-barrel membrane proteins: relation to infrared dichroism, Biophys. J. 80, 2789-2797.
26. Ramakrishnan, M., Pocanschi, C. L., Kleinschmidt, J. H., and Marsh, D. (2004) Orientation of β-barrel proteins OmpA and FhuA in lipid membranes. Chain length dependence from infrared dichroism (to be submitted for publication).
27. Pautsch, A., and Schulz, G. E. (1998) Structure of the outer membrane protein A transmembrane domain, Nat. Struct. Biol. 5, 1013-1017.
28. Guex, N., and Peitsch, M. C. (1997) Swiss model and the Swiss-Pdb viewer: An environment for comparative protein modeling, Electrophoresis 18, 2714-2723.
29. Koradi, R., Billeter, M., and Wüthrich, K. (1996) MOLMOL: a program for display and analysis of macromolecular structures, J. Mol. Graphics 14, 51-55.
30. Kota, Z., Páli, T., and Marsh, D. (2004) Orientation and lipid-peptide interactions of gramicidin A in lipid membranes: polarized ATR infrared spectroscopy and spin-label electron spin resonance, Biophys. J. 86, 1521-1531.
31. Sankaram, M. B., Brophy, P. J., Jordi, W., and Marsh, D. (1990) Fatty acid pH titration and the selectivity of interaction with extrinsic proteins in dimyristoylphosphatidylglycerol dispersions. Spin label ESR studies, Biochim. Biophys. Acta 1021, 63-69.
32. 31P-NMR studies of the cubic and inverted hexagonal phases of dimyristoylphosphatidylcholine/myristic acid (1:2, mol/mol) mixtures, Biochim. Biophys. Acta 1024, 89-94.
33. Schorn, K., and Marsh, D. (1996) Lipid chain dynamics and molecular location of diacylglycerol in hydrated binary mixtures with phosphatidylcholine: spin label ESR studies, Biochemistry 35, 3831-3836.
34. Locher, K. P., Rees, B., Koebnik, R., Mitschler, A., Moulinier, L., Rosenbusch, J. P., and Moras, D. (1998) Transmembrane signaling across the ligand-gated FhuA receptor: crystal structures of free and ferrichrome-bound states reveal allosteric changes, Cell 95, 771-778.
35. Kramer, R. A., Brandenburg, K., Vandeputte-Rutten, L., Werkhoven, M., Gros, P., Dekker, N., and Egmond, M. R. (2002) Lipopolysaccharide regions involved in the activation of Escherichia coli outer membrane protease OmpT, Eur. J. Biochem. 269, 1746-1752.
36. de Cock, H., Brandenburg, K., Wiese, A., Holst, O., and Seydel, U. (1999) Non-lamellar structure and negative charges of lipopolysaccharides required for efficient folding of outer membrane protein PhoE of Escherichia coli, J. Biol. Chem. 274, 5114-5119.
37. de Cock, H., Pasveer, M., Tommassen, J., and Bouveret, E. (2001) Identification of phospholipids as new components that assist in the in vitro trimerization of a bacterial pore protein, Eur. J. Biochem. 268, 865-875.
38. Bulieris, P. V., Behrens, S., Holst, O., and Kleinschmidt, J. H. (2003) Folding and insertion of the outer membrane protein OmpA is assisted by the chaperone Skp and by lipopolysaccharide, J. Biol. Chem. 278, 9092-9099.