Isolation and characterisation of an isoproturon-mineralising Methylopila sp. TES from French agricultural soil

FEMS Microbiology Letters

Volumn 239, Issue 1, 2004, Pages 103-110

  Sebai, Talaat El ^a,b   Lagacherie, Bernard ^a   Soulas, Guy ^a,c   Martin Laurent, Fabrice ^a  

^a UNIVERSITÉ DE BOURGOGNE   (France)

^b NATIONAL RESEARCH CENTRE   (Egypt)

^c UNIVERSITÉ DE BORDEAUX   (France)

Author keywords

Biodegradation; Isoproturon; Methylopila sp.; Phenylurea

Indexed keywords

CARBON DIOXIDE; CHLORTOLURON; ISOPROTURON; LINURON; MONOLINURON;

AGRICULTURE; ARTICLE; BACTERIAL STRAIN; BACTERIUM CULTURE; BACTERIUM ISOLATION; BIOMASS; DNA SEQUENCE; FRANCE; GENE AMPLIFICATION; METHYLOPHILUS; MINERALIZATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PLASMID; PRIORITY JOURNAL; SOIL;

AGRICULTURE; BACTERIAL TYPING TECHNIQUES; BIODEGRADATION, ENVIRONMENTAL; CULTURE MEDIA; DNA, RIBOSOMAL; FRANCE; HERBICIDES; METHYLOCYSTACEAE; MOLECULAR SEQUENCE DATA; PHENYLUREA COMPOUNDS; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY;

BACTERIA (MICROORGANISMS); METHYLOPILA; METHYLOPILA SP. TES;

EID: 4644327650     PISSN: 03781097     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.femsle.2004.08.017     Document Type: Article

References (40)

1. S.R. Sorensen, G.D. Bending, C.S. Jacobsen, A. Walker, and J. Aamand Microbial degradation of IPU and related phenylurea herbicides in and below agricultural fields FEMS Microbiol. Ecol. 45 2003 1 11
2. J.A. Field, R.L. Reed, T.E. Sawyer, and M. Martinez Diuron and its metabolites in surface water and ground water by solid phase extraction and in-vial elution J. Agric. Food Chem. 45 1997 3897 3902
3. E.M. Thurman, K.C. Bastian, and T.U. Mollhagen Occurrence of cotton herbicides and insecticides in playa lakes of the High Plains of West Texas Sci. Tot. Environ. 248 2000 189 200
4. L. Nitchke, and W. Schussler Surface water pollution by herbicides from effluents of wastewater treatment plants Chemosphere 36 1998 35 41
5. F. Pérés, D. Florin, T. Grollier, A. Feurtet-Mazel, M. Coste, F. Ribeyre, M. Ricard, and A. Boudou Effect of the phenylurea herbicide IPU on periphytic diatom communities in freshwater indoor microcosms Environ. Pollut. 94 1996 141 152
6. A. Remde, and W. Traunspurger A method to assess the toxicity of pollutants on anaerobic microbial degradation activity in sediments Environ. Toxicol. Water Qual. 9 1994 293 298
7. B.C. Behera, and S.P. Bhunya Genotoxic effects of IPU (herbicide) as revealed by three mammalian in vivo mutagenic bioassays Ind. J. Exp. Biol. 28 1990 862 867
8. Brown, A.E. (1999) Pesticides and cancer. Pesticide Information Leaflet no. 33. Pesticides and Cancer, pp. 1-14. Entomology Department, U. MD
9. L. Cox, A. Walker, and S.J. Welch Evidence for the enhanced biodegradation of IPU in soils Pest. Sci. 48 1996 253 260
10. M. Pieuchot, C. Perrin-Garnier, J.M. Portal, and M. Schiavon Study on the mineralization and degradation of IPU in three soils Chemosphere 33 1996 467 478
11. A.C. Johnson, C.D. Hughes, R.J. Williams, and P.J. Chilton Potential for aerobic IPU biodegradation and sorption in the unsaturated and saturated zones of a chalk aquifer J. Contamin. Hydrol. 30 1998 281 297
12. B.M. Berger Factors influencing transformation rates and formation of products of phenylurea herbicides in soil J. Agric. Food Chem. 47 1999 3389 3396
13. L. Larsen, S.R. Sorensen, and J. Aamand Mecoprop, IPU, and atrazine in and above a sandy aquifer: vertical distribution of mineralization potential Environ. Sci. Technol. 34 2000 2426 2430
14. G.B. Kristensen, S.R. Soerensen, and J. Aamand Mineralization of 2,4-D, mercoprop, IPU, and terbuthylazine in a chalk aquifer Chemosphere 45 2001 927 934
15. S.R. Sorensen, and J. Aamand Biodegradation of the phenylurea herbicide IPU and its metabolites in agricultural soils Biodegradation 12 2001 69 77
16. J.E. Cullington, and A. Walker Rapid biodegradation of diuron and other phenylurea herbicides by a soil bacterium Soil Biol. Biochem. 31 1999 677 686
17. G.D. Bending, E. Shaw, and A. Walker Spatial heterogeneity in the metabolism and dynamics of IPU-degrading microbial communities in soil Biol. Fert. Soils 33 2001 484 489
18. S.R. Sorensen, and J. Aamand Rapid mineralisation of the herbicide IPU in soil from a previously treated Danish agricultural field Pest Manag. Sci. 59 2003 1118 1124
19. S.R. Sorensen, Z. Ronen, and J. Aamand Isolation from agricultural soil and characterization of a Sphingomonas sp. able to mineralize the phenylurea herbicide IPU Appl. Environ. Microbiol. 67 2001 5403 5409
20. S. Lehr, W.E. Glässgen, H. Sandermann, F.J. Besse, and I. Scheunert Metabolism of IPU in soils originating from different agricultural systems and in cultures of isolated soil bacteria Int. J. Environ. Anal. Chem. 65 1996 231 243
21. G.A. Turnbull, J.E. Cullington, A. Walker, and J.A.W. Morgan Identification and characterization of a diuron degrading bacterium Biol. Fertil. Soils 33 2001 472 476
22. G.A. Turnbull, M. Ousley, A. Walker, E. Shaw, and J.A.W. Morgan Degradation of substituted phenylurea herbicides by Arthrobacter globiformis strain D47 and characterization of plasmid-associated hydrolase gene puhA Appl. Environ. Microbiol. 67 2001 2270 2275
23. El-Sebaï, T., Lagacherie, B., Cooper, J.F., Soulas, G. and Martin-Laurent, F. (2004) Enhanced IPU mineralisation in a clay silt loam agricultural soil. Agronomie (in press)
24. S. Rousseaux, A. Hartmann, and G. Soulas Isolation and characterization of new Gram-negative and Gram-positive atrazine-degrading bacteria from different French soils FEMS Microbiol. Ecol. 36 2001 211 222
25. B. Combourieu, P. Besse, M. Sancelme, H. Veschambre, A. Delort, P. Poupin, and N. Truffaut Morpholine degradation pathway of Mycobacterium aurum MO1: direct evidence of intermediates by in situ 1H Nuclear Magnetic Resonance Appl. Environ. Microbiol. 64 1998 153 158
26. 2O in two soils Biol. Fertil. Soils 28 1998 19 26
27. V. Gurtler, and V.A. Stanisich New approaches to typing and identification of bacteria using the 16S-23S rDNA spacer region Microbiol. 142 1996 3 16
28. W.G. Weisburg, S.M. Barns, D.A. Pelletier, and D.J. Lane 16S ribosomal DNA amplification for phylogenetic study J. Bact. 173 1991 697 703
29. T. Eckhardt A rapid method for the identification of plasmid desoxyribonucleic acid in bacteria Plasmid 1 1978 584 588
30. R. Wheatcroft, D.G. McRae, and R.W. Miller Changes in the Rhizobium meliloti genome and the ability to detected supercoiled plasmids during bacteroid development Mol. Plant Microb. Interact. 3 1990 9 17 31
31. L. Ranjard, and A. Richaume Quantitative and qualitative microscale distribution of bacteria in soil Res. Microbiol. 152 2001 707 716
32. T.K. Ralebitso-Senior, C. Costa, W.F.M. Röling, M. Braster, and E. Senior Atrazine catabolism by a combined bacterial association (KRA30) under carbon- and nitrogen-limitations in a retentostat J. Appl. Microbiol. 94 2003 1043 1051
33. N.V. Doronina, Y.A. Trotsenko, V.I. Krausova, E.S. Boulygina, and T.P. Tourova Methylopila capsulata gen. nov., sp. nov., a novel non-pigmented aerobic facultatively methylotrophic bacterium Int. J. Syst. Bacteriol. 48 1998 1313 1321
34. N.V. Doronina, Y.A. Trotsenko, T.P. Tourova, B.B. Kuznetsov, and T. Leisinger Methylopila helvetica sp. nov. and Methylobacterium dichloromethanicum sp. nov. - novel aerobic facultatively methylotrophic bacteria utilizing dichloromethane Syst. Appl. Microbiol. 23 2000 210 218
35. E.M. Top, and D. Springael The role of mobile genetic elements in bacterial adaptation to xenobiotic organic compounds Curr. Opin. Biotechnol. 14 2003 262 269
36. S.J. Roberts, A. Walker, L. Cox, and S.J. Welch Isolation of IPU-degrading bacteria from treated soil via three different routes J. Appl. Microbiol. 85 1998 309 316
37. P. Widehem, S. Ait-Aissa, C. Tixier, M. Sancelme, H. Veschambre, and N. Truffaut Isolation, characterization and diuron transformation capacities of a bacterial strain Arthrobacter sp. N2 Chemosphere 46 2002 527 534
38. W. Dejonghe, J. Goris, S. El-Fantroussi, P. De Vos, W. Verstraete, and E.M. Top Microbiological and genetic characterization of a linuron degrading consortium Med. Fac. Landb. Univ. Gent. 65 2000 69 73
39. S.R. Sorensen, Z. Ronen, and J. Aamand Growth in co-culture stimulates metabolism of the phenylurea herbicide IPU by Sphingomonas sp. strain SRS2 Appl. Environ. Microbiol. 68 2002 3478 3485
40. G.D. Bending, S.D. Lincoln, S.R. Sorensen, J.A.W. Morgan, J. Aamand, and A. Walker In-field spatial variability in the degradation of the phenyl-urea herbicide is the result of interactions between degradative Sphingomonas sp. and soil pH Appl. Environ. Microbiol. 69 2003 827 834