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Volumn 59, Issue 4, 2004, Pages 520-527

Overlapping messages and survivability

Author keywords

Fitting landscape; Lethal mutation; Mutation rate; Survival

Indexed keywords

ARTICLE; CODON; COST; DNA SEQUENCE; GENE SEQUENCE; GENOME; LETHAL MUTANT; MOLECULAR EVOLUTION; MUTATION RATE; PHENOMENOLOGY; STRUCTURAL GENE; SURVIVAL RATE;

EID: 4644313330     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-004-2644-5     Document Type: Article
Times cited : (20)

References (38)
  • 1
    • 0021203305 scopus 로고
    • Is there a higher level genetic code that directs evolution?
    • Caporale LH (1984) Is there a higher level genetic code that directs evolution? Mol Cell Biochem 64:5-13
    • (1984) Mol Cell Biochem , vol.64 , pp. 5-13
    • Caporale, L.H.1
  • 2
    • 0036828866 scopus 로고    scopus 로고
    • Novel mitochondrial protein, Tar1p, is encoded on the antisense strand of the nuclear 25S rDNA
    • Coelho PS, Bryan AC, Kumar A, Shadel GS, Snyder MA (2002) Novel mitochondrial protein, Tar1p, is encoded on the antisense strand of the nuclear 25S rDNA. Genes Dev 16:2755-2760
    • (2002) Genes Dev , vol.16 , pp. 2755-2760
    • Coelho, P.S.1    Bryan, A.C.2    Kumar, A.3    Shadel, G.S.4    Snyder, M.A.5
  • 3
    • 0041802877 scopus 로고    scopus 로고
    • The gene structure and expression of human ABHD1: Overlapping polyadenylation signal sequence with Sec12
    • Edgar AJ (2003) The gene structure and expression of human ABHD1: Overlapping polyadenylation signal sequence with Sec12. BMC Genomics 4:18
    • (2003) BMC Genomics , vol.4 , pp. 18
    • Edgar, A.J.1
  • 4
    • 0024846372 scopus 로고
    • Functional analysis of CAR, the target sequence for the Rev protein of HIV-1
    • Dayton E, Powell D, Dayton A (1989) Functional analysis of CAR, the target sequence for the Rev protein of HIV-1. Science 246:1625-1629
    • (1989) Science , vol.246 , pp. 1625-1629
    • Dayton, E.1    Powell, D.2    Dayton, A.3
  • 5
    • 0036924931 scopus 로고    scopus 로고
    • Characterization of the frameshift stimulatory signal controlling a programmed -1 ribosomal frameshift in the human immunodeficiency virus type 1
    • Dulude D, Baril M, Brakier-Gingras L (2002) Characterization of the frameshift stimulatory signal controlling a programmed -1 ribosomal frameshift in the human immunodeficiency virus type 1. Nucleic Acids Res 30:5094-5102
    • (2002) Nucleic Acids Res , vol.30 , pp. 5094-5102
    • Dulude, D.1    Baril, M.2    Brakier-Gingras, L.3
  • 7
    • 0033561022 scopus 로고    scopus 로고
    • Comparative study of overlapping genes in the genomes of Mycoplasma genitalium, Mycoplasma pneumoniae
    • Fukuda Y, Washio T, Tomita M (1999) Comparative study of overlapping genes in the genomes of Mycoplasma genitalium, Mycoplasma pneumoniae. Nucleic Acids Res 27:1847-1853
    • (1999) Nucleic Acids Res , vol.27 , pp. 1847-1853
    • Fukuda, Y.1    Washio, T.2    Tomita, M.3
  • 8
    • 4644366682 scopus 로고
    • Evolutionary dynamics and the coding structure of sequences: Multiple coding as a consequence of crossover and high mutation rates
    • Hogeweg P, Hesper B (1992) Evolutionary dynamics and the coding structure of sequences: Multiple coding as a consequence of crossover and high mutation rates. Computers Chem 4:300-314
    • (1992) Computers Chem , vol.4 , pp. 300-314
    • Hogeweg, P.1    Hesper, B.2
  • 9
    • 0002551496 scopus 로고
    • Genetic recombination in fungi
    • Peacock WJ, Brock RD (eds). Australian Academy of Science, Canberra
    • Holliday R (1968) Genetic recombination in fungi. In: Peacock WJ, Brock RD (eds) Replication and recombination of genetic material. Australian Academy of Science, Canberra, pp 157-174
    • (1968) Replication and Recombination of Genetic Material , pp. 157-174
    • Holliday, R.1
  • 10
    • 0027377681 scopus 로고
    • Multiple coding and the evolutionary properties of RNA secondary structure
    • Huynen MA, Konings DA, Hogeweg P (1993) Multiple coding and the evolutionary properties of RNA secondary structure. J Theor Biol 165:251-267
    • (1993) J Theor Biol , vol.165 , pp. 251-267
    • Huynen, M.A.1    Konings, D.A.2    Hogeweg, P.3
  • 11
    • 0026034946 scopus 로고
    • Structural analysis of the interaction between the human immunodeficiency virus Rev protein and the Rev response element
    • Kjems J, Brown M, Chang D, Sharp S (1991) Structural analysis of the interaction between the human immunodeficiency virus Rev protein and the Rev response element. Proc Natl Acad Sci USA 88:683-687
    • (1991) Proc Natl Acad Sci USA , vol.88 , pp. 683-687
    • Kjems, J.1    Brown, M.2    Chang, D.3    Sharp, S.4
  • 12
    • 0002950692 scopus 로고
    • Coexistence of multiple codes in messenger RNA molecules
    • Konings DA (1992) Coexistence of multiple codes in messenger RNA molecules. Comput Chem 16:153-163
    • (1992) Comput Chem , vol.16 , pp. 153-163
    • Konings, D.A.1
  • 13
    • 0023238921 scopus 로고
    • Evolution of the primary and secondary structures of the E1a mRNAs of the adenovirus
    • Konings DA, Hogeweg P, Hesper B (1987) Evolution of the primary and secondary structures of the E1a mRNAs of the adenovirus. Mol Biol Evol 4:300-314
    • (1987) Mol Biol Evol , vol.4 , pp. 300-314
    • Konings, D.A.1    Hogeweg, P.2    Hesper, B.3
  • 14
    • 0033926304 scopus 로고    scopus 로고
    • Stability and evolution of overlapping genes
    • Krakauer DC (2000) Stability and evolution of overlapping genes. Int J Org Evol 54:731-739
    • (2000) Int J Org Evol , vol.54 , pp. 731-739
    • Krakauer, D.C.1
  • 15
    • 0023059773 scopus 로고
    • A part of codon bias in genes protects protein spatial structures from destabilization by random single point mutations
    • Kypr J (1986) A part of codon bias in genes protects protein spatial structures from destabilization by random single point mutations. Biochem Biophys Res 139:1094-1097
    • (1986) Biochem Biophys Res , vol.139 , pp. 1094-1097
    • Kypr, J.1
  • 16
    • 0027075073 scopus 로고
    • mRNA periodical infrastructure complementary to the proof-reading site in the ribosome
    • Lagunez-Otero J, Trifonov EN (1992) mRNA periodical infrastructure complementary to the proof-reading site in the ribosome. J Biomol Struct Dyn 10:455-464
    • (1992) J Biomol Struct Dyn , vol.10 , pp. 455-464
    • Lagunez-Otero, J.1    Trifonov, E.N.2
  • 18
    • 0024518918 scopus 로고
    • The HIV-1 rev trans-activator acts through a structured target sequence to activate nuclear export of unspliced viral mRNA
    • Malim M, Hauber J, Le S-Y, Mazel J, Cullen B (1989) The HIV-1 rev trans-activator acts through a structured target sequence to activate nuclear export of unspliced viral mRNA. Nature 338:254-257
    • (1989) Nature , vol.338 , pp. 254-257
    • Malim, M.1    Hauber, J.2    Le, S.-Y.3    Mazel, J.4    Cullen, B.5
  • 19
    • 0025190644 scopus 로고
    • HlV-1 structural gene expression requires binding of the Rev trans-activator to its RNA target sequence
    • Malim M, Tiley L, McCarn D, Rusche J, Hauber J, Cullen B (1990) HlV-1 structural gene expression requires binding of the Rev trans-activator to its RNA target sequence. Cell 60:675-683
    • (1990) Cell , vol.60 , pp. 675-683
    • Malim, M.1    Tiley, L.2    McCarn, D.3    Rusche, J.4    Hauber, J.5    Cullen, B.6
  • 20
    • 0026533645 scopus 로고
    • Identification and analysis of the gag-pol ribosomal frameshift site of feline immunodeficiency virus
    • Morikawa S, Bishop DH (1992) Identification and analysis of the gag-pol ribosomal frameshift site of feline immunodeficiency virus. Virology 186:389-397
    • (1992) Virology , vol.186 , pp. 389-397
    • Morikawa, S.1    Bishop, D.H.2
  • 22
    • 0026717107 scopus 로고
    • Human immunodeficiency virus type 1 gag-pol frameshifting is dependent on downstream mRNA secondary structure: Demonstration by expression in vivo
    • Parkin NT, Chamorro M, Varmus HE (1992) Human immunodeficiency virus type 1 gag-pol frameshifting is dependent on downstream mRNA secondary structure: Demonstration by expression in vivo. J Virol 66:5147-5115
    • (1992) J Virol , vol.66 , pp. 5147-5115
    • Parkin, N.T.1    Chamorro, M.2    Varmus, H.E.3
  • 23
    • 0030976687 scopus 로고    scopus 로고
    • On the informational content of overlapping genes in prokaryotic and eukaryotic viruses
    • Pavesi A, De Iaco B, Granero MI, Porati A (1997) On the informational content of overlapping genes in prokaryotic and eukaryotic viruses. J Mol Evol 44:625-631
    • (1997) J Mol Evol , vol.44 , pp. 625-631
    • Pavesi, A.1    De Iaco, B.2    Granero, M.I.3    Porati, A.4
  • 24
    • 0036375092 scopus 로고    scopus 로고
    • RNA secondary structure and sequence conservation in C1 region of human immunodeficiency virus type 1 env gene. AIDS
    • Peleg O, Brunak S, Trifonov EN, Nevo E, Bolshoy A (2002) RNA secondary structure and sequence conservation in C1 region of human immunodeficiency virus type 1 env gene. AIDS. Res Hum Retro 18:867-878
    • (2002) Res Hum Retro , vol.18 , pp. 867-878
    • Peleg, O.1    Brunak, S.2    Trifonov, E.N.3    Nevo, E.4    Bolshoy, A.5
  • 25
    • 0242349119 scopus 로고    scopus 로고
    • Hidden messages in the nef gene of human immunodeficiency virus type 1 suggest a novel RNA secondary structure
    • Peleg O, Trifonov EN, Bolshoy A (2003) Hidden messages in the nef gene of human immunodeficiency virus type 1 suggest a novel RNA secondary structure. Nucleic Acids Res 31:4192-4200
    • (2003) Nucleic Acids Res , vol.31 , pp. 4192-4200
    • Peleg, O.1    Trifonov, E.N.2    Bolshoy, A.3
  • 26
    • 0015111534 scopus 로고
    • Dual information in DNA and the evolution of the genetic code
    • Schaap T (1971) Dual information in DNA and the evolution of the genetic code. J Theor Biol 32:293-298
    • (1971) J Theor Biol , vol.32 , pp. 293-298
    • Schaap, T.1
  • 28
    • 0021760026 scopus 로고
    • Computer methods to locate signals in nucleic acid sequences
    • Staden R (1984) Computer methods to locate signals in nucleic acid sequences. Nucleic Acids Res 12(1,Pt 2):505-519
    • (1984) Nucleic Acids Res , vol.12 , Issue.1 PART 2 , pp. 505-519
    • Staden, R.1
  • 29
    • 0041660967 scopus 로고    scopus 로고
    • Solution structure of the HIV-1 frameshift inducing stem-loop RNA
    • Staple DW, Butcher SE (2003) Solution structure of the HIV-1 frameshift inducing stem-loop RNA. Nucleic Acids Res 31:4326-4331
    • (2003) Nucleic Acids Res , vol.31 , pp. 4326-4331
    • Staple, D.W.1    Butcher, S.E.2
  • 30
    • 0039581268 scopus 로고
    • Structure of DNA in chromatin
    • Schweiger H (ed). Springer-Verlag, Berlin
    • Trifonov EN (1981) Structure of DNA in chromatin. In: Schweiger H (ed) International cell biology 1980-1981. Springer-Verlag, Berlin, pp 128-138
    • (1981) International Cell Biology 1980-1981 , pp. 128-138
    • Trifonov, E.N.1
  • 31
    • 0023194889 scopus 로고
    • Translation framing code and frame-monitoring mechanism as suggested by the analysis of mRNA and 16 S rRNA nucleotide sequences
    • Trifonov EN (1987) Translation framing code and frame-monitoring mechanism as suggested by the analysis of mRNA and 16 S rRNA nucleotide sequences. J Mol Biol 194:643-652
    • (1987) J Mol Biol , vol.194 , pp. 643-652
    • Trifonov, E.N.1
  • 32
    • 0024334889 scopus 로고
    • The multiple codes of nucleotide sequences
    • Trifonov EN (1989) The multiple codes of nucleotide sequences. Bull Math Biol 51:417-432
    • (1989) Bull Math Biol , vol.51 , pp. 417-432
    • Trifonov, E.N.1
  • 33
    • 0026778490 scopus 로고
    • Recognition of correct reading frame by the ribosome
    • Trifonov EN (1992) Recognition of correct reading frame by the ribosome. Biochimie 74:357-362
    • (1992) Biochimie , vol.74 , pp. 357-362
    • Trifonov, E.N.1
  • 34
    • 0030474941 scopus 로고    scopus 로고
    • Interfering contexts of regulatory sequence elements
    • Trifonov EN (1996) Interfering contexts of regulatory sequence elements. Comput Appl Biosci 12:423-429
    • (1996) Comput Appl Biosci , vol.12 , pp. 423-429
    • Trifonov, E.N.1
  • 35
    • 0026784740 scopus 로고
    • Enhancement of ribosomal frameshifting by oligonucleotides targeted to the HIV gag-pol region
    • Vickers TA, Ecker DJ (1992) Enhancement of ribosomal frameshifting by oligonucleotides targeted to the HIV gag-pol region. Nucleic Acids Res 20:3945-3953
    • (1992) Nucleic Acids Res , vol.20 , pp. 3945-3953
    • Vickers, T.A.1    Ecker, D.J.2
  • 36
    • 0033567123 scopus 로고    scopus 로고
    • Viral RNA and evolved mutational robustness
    • Wagner A, Stadler PF (1999) Viral RNA and evolved mutational robustness. J Exp Zool 285:119-127
    • (1999) J Exp Zool , vol.285 , pp. 119-127
    • Wagner, A.1    Stadler, P.F.2
  • 37
    • 0037468433 scopus 로고    scopus 로고
    • Overlapping gene structure of human VLCAD and DLG4
    • Zhou C, Blumberg B (2003) Overlapping gene structure of human VLCAD and DLG4. Gene 305:161-166
    • (2003) Gene , vol.305 , pp. 161-166
    • Zhou, C.1    Blumberg, B.2
  • 38
    • 0017184736 scopus 로고
    • Evolutionary processes and evolutionary noise at the molecular level. II. A selectionist model for random fixations in proteins
    • Zuckerkandl E (1976) Evolutionary processes and evolutionary noise at the molecular level. II. A selectionist model for random fixations in proteins. J Mol Evol 7:269-311
    • (1976) J Mol Evol , vol.7 , pp. 269-311
    • Zuckerkandl, E.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.