Origin of gene overlap: The case of TCP1 and ACAT2

Genetics

Volumn 152, Issue 2, 1999, Pages 743-754

  Shintani, Seikou ^a   O'Huigin, Colm ^a   Toyosawa, Satoru ^a   Michalovâ, Vëra ^a   Klein, Jan ^a  

^a MAX PLANCK INST FÜR BIOLOGIE   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ACETYL COENZYME A ACETYLTRANSFERASE; CHAPERONE;

ARTICLE; CHROMOSOME REARRANGEMENT; DNA TRANSPOSITION; EVOLUTION; GENE STRUCTURE; GENETIC CONSERVATION; HUMAN; LIPID METABOLISM; MAMMAL; MONOTREMATE; NONHUMAN; NUCLEOTIDE SEQUENCE; OPOSSUM; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; TOAD; ZEBRA FISH;

ANURA; CAIMAN; DANIO RERIO; DIDELPHIDAE; MAMMALIA; MONOTREMATA; REPTILIA;

EID: 0033017050     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (50)

1. AAROXSON, J. S., B. ECKMAN, R. A. BLKVINS, J. A. BORKOWSKLJ. M VERSON et al., 1996 Toward the development of a gene index to the human genome: an assessment of the nature of highthroughput EST sequence data. Genome Res. 6: 829-845.
2. ABE, H., A. OIITAKE, S. YAMAMOTO, Y. SATOII, M. TAKAYANACI el al., 1993 Cloning and sequence analysis of a full length cDNA encoding human mitochondrial 3-oxoacyl-CoA thiolase. Biochim. Biophys. Acta 1216: 304-306.
3. ADELMAN.J. P., C. T. BOND,J. DOUGIASS and E. HERBERT, 1987 Two mammalian genes transcribed from opposite strands of the same DMA locus. Science 235: 1514-1517.
4. ASHWORTII, A., 1993 Two acetyl-CoA acetyltransferase genes located in the /-complex region of mouse chromosome 17 partially overlap the Tcp-1 and Tcp-lx genes. Genomics 18: 195-198.
5. BARREU., B. G., G. M. AIR and C. A. HUTCHINSON III, 1976 Overlapping genes in bacteriophage (JiX174. Nature 264: 34-41.
6. CARROLL, R. L., 1988 Vertebrate Paleontology and Evolution. W. H. Freeman, New York.
7. CAWTIION, R. M., L. B. ANDERSED, A. M. BUCIIRERG, G. Xu, P. O'Co.vNELL et al., 1991 cDNA sequence and gcnomic structure of EV12B, a gene lying within an intron of the neurofibromatosis type 1 gene. Genomics 9: 446-460.
8. CEINKENBEARD, K. D., T. SUGIVAMA, J. Moss, W. G. REED and M. D. LANE, 1973 Molecular and catalytic properties of cytosolic acetoacetyl coenzyme A thiolase from avian liver. J. Biol. Chem. 248: 2275-2284.
9. COOPER, P. R., N.J. SMILINICII, C. D. DAY, N.J. NOWAK, L. H. RF.ID et al., 1998 Divergently transcribed overlapping genes expressed in liver and kidney and located in the 1 Ipl5.5 imprinted domain. Genomics 49: 38-51.
10. DUDLEY, K., F. SHANAHAN, M. BURTENSHAW, E. P. EVANS, S. RUDDY etal., 1991 Isolation and characterization of a cDNA clone corresponding to the mouse H:omplex gene Tcp-lx. Genet. Res. 57: 147-152.
11. ELUS, R. J., and S. M. VAN DER VIES, 1991 Molecular chaperones. Annu. Rev. Biochem. GO: 321-347.
12. EMI, M., A. HORII, N. TOMITA, T. NISIIIDE, M. OGAWA el al, 1988 Overlapping two genes in human DNA: a salivary amylase gene overlaps with a gamma-actin pseudogene that carries an integrated human endogenous retroviral DNA. Gene 62: 229-235.
13. FAIRBAIRN, L. J., and M. J. A. TANNER, 1989 Complete cDNA sequence of human foetal liver peroxisomal 3-oxoacyl-CoA thiolase. Nucleic Acids Res. 17: 3588.
14. FUKAO, T., S. YAMACUCIII, M. KANO, T. ORII, Y. FUJIKI el al, 1990 Molecular cloning and sequence of the complementary DMA encoding human mitochondrial acetoacetyl-coenzyme A thiolase and study of the variant enzymes in cultured fibroblasts from patients with 3-ketothiolase deficiency. J. Clin. Invest. 86: 2086-2092.
15. GILBERT, D. G., 1989 DottyPlotter Version l.Oc, http://iubio.bio. indiana.edu/IUBio-Software+Data/molbio/macJ.
16. GILBERT, D. G., 1995 SeqPup Version 0.4j: a biosequence editor and analysis application, http:/iubio.bio.indiana.eclu/soft/molbio/.
17. GRIMA, B., D. ZELENIKA and B. PESSAC, 1992 A novel transcript overlapping the myelin basic protein gene. J. Neurochem. 59: 2318-2323.
18. HADANO, S., Y. ISIIIDA, H. TOMIYASU, K. YAMAMOTO, G. P. BATES el al, 1996 Transcript map of the human chromosome 4pl6.3 consisting of 627 cDNA clones derived from 1 Mb of the Huntington's disease locus. DNA Res. 3: 239-255.
19. HOKWICH, A. L., and K. R. WILLISON, 1993 Protein folding in the cell: function of two families of molecular chaperone, hspGO and TF55-TCP1. Phil. Trans. R. Soc. Loud. 339: 313-326.
20. IGUAL,J. C., C. GONZALEZ-BOSCILJ. DopAzo anclj. E. PEREZ-ORTIN, 1992 Phylogenetic analysis of the thiolase family. Implications for the evolutionär)'origin of peroxisomes.J. Mol. Evol. 35: 147-155.
21. JOSEPH, D. R., 1998 The rat androgen-binding protein (ABP/SHBG) gene contains triplet repeats similar to unstable triplets: evidence that the ABP/SHBG and the fragile X-related 2 genes overlap. Steroids 63: 2-4.
22. KAMIJO, T., T. AOYAMA, A. KOMIYAMA and T. HASIIIMOTO, 1994 Structural analysis of cDN'As for subunits of human mitochondrial fatty acid beta-oxidation trifunctional protein. Biochem. Biophys. Res. Commun. 199: 818-825.
23. KAWAGUCIII, H., C. O'iiUioix andj. KLEIN, 1991 Evolution of primate C4 and CYP21 genes, pp. 357-381 in Molecular Evolution of the Major I[istoeompatibility Complex, edited by J. KLKIN and D. KLEIN. Springer-Verlag, Heidelberg.
24. KOUEL, H., and L. Du PASO.UIER, 1986 Genetics of polyploicl Xenopiis. Trends Genet. 2: 310-315.
25. KUBOTA, H., G. HYNES, A. CARNE, A. ASHWORTII and K. WILLISON, 1994 Identification of six 7V/i-/-related genes encoding divergent subunits of the TCP-1-containing chaperonin. Curr. Biol. 4: 89-99.
26. LAUDET, V., A. BEGUE, C. HENRY-DUTIIOIT, A. JOUBEI, P. MARTIN et al., 1991 Genomic organization of the human thyroid hormone receptor a (c-erbA-1) gene. Nucleic Acids Res. 19: 1105-1112.
27. Li, W., 1993 Unbiased estimation of the rates of synonymous and nonsynonymous substitution. J. Mol. Evol. 36: 96-99.
28. MASUNO, M., T. FUKAO, X.-Q. SONG, S. YAMAGUCIII, T. ORII et al., 1996 Assignment of the human cytosolic acetoacetyl-coenzyme A thiolase (ACAT2) gene to chromosome 6q25.3-q26. Genomics 36: 217-218.
29. Mmm.KTON, B., 1973 The oxoacyl-coenzyme A thiolases of animal tissue. Biochcm.J. 132: 717-730.
30. MIDDLETON, B., 1974 The kinetic mechanism and properties of the cytoplasmic acetoacet) I-coenzyme A thiolase from rat liver. Biochem.J. 139: 109-121.
31. MIDDLETON, B., 1975 3-KetoacyI-CoA thiolases of mammalian tissues. Methods Enzymol. 35: 128-136.
32. MIYATA, T., and T. YASUNAGA, 1978 Evolution of overlapping genes. Nature 272: 532-535.
33. MOREL, Y.J. BRISTOW, S. E. GITELMAN and W. L. MILLER, 1989 Transcript encoded on the opposite strand of the human steroid 21hydroxylase/complement component C4 gene locus. Proc. Natl. Acad. Sci. USA 86: 6582-6586.
34. NICOLOSO, M., M. CAIZERGUES-FERRER, B. MICIIOT, M. C..AZUM and J. P. BACHELLERIE, 1994 U20, a novel small nucleolar RNA, is encoded in an intron of the nucleolin gene in mammals. Mol. Cell. Biol. 14: 5766-5776.
35. NORMARK, S., S. BKRGSTRÖM, T. EDLUND, T. GRUNDSTRÖM, B. JAURIN et al., 1983 Overlapping genes. Annu. Rev. Genet. 17: 499-525.
36. NOVACKK, M.J., 1992 Mammalian pliylogeny: shaking the tree. Nature 356: 121-125.
37. O'HUIGIN, C., and W.-H. Li, 1992 Tlie molecular clock ticks regularly in muroicl rodents and hamsters. J. Mol. Evol. 35: 377-384.
38. SANGER, F., G. M. AIR, B. G. BARRKLL, N. L. BRCHVN, A. R. COULSON et al, 1977 Nucleotide sequence of bacteriophage QX174 DNA. Nature 265: 687-695.
39. SIIAYIQ, R. M., and N. G. AVAOHANI, 1992 Sequence complementarity between the 5' terminal regions ofmRNAs for rat mitochondrial cytochromc P-150c27/25 and a growth hormone-inducible serine protease inhibitor. J. Biol. Chem. 267: 2421-2-428.
40. SONG, X.-Q., T. FUKAO, S. YAMACUCIII, S. MIVAZAWA, T. HASIIIMOTO elal., 1994 Molecular cloning and nuclcotidc sequence of complementary DN'A for human hepatic cytosolic acetoacelyl-cocnzyme A thiolase. Biochem. Biophys. Res. Commun. 201:478-485.
41. SWALLA, B. J., and W. R.JEFFF.RY, 199G PCNA mRNA has a 3'UTR antisense to yellow crescent RNA and is localized in ascidian eggs and embryos. Dev. Biol. 178: 23-34.
42. TIIOMPSON.J. D., D. G. HIGGINS and T. J. GinsoN, 199 J CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680.
43. TOVOSAWA, S., C. O'uUiGiN, F. FIGUEROA, H. TiciiY and J. KLEIN, 1998 Identification and characterization of amelogenin genes in monotremes, reptiles, and amphibians. Proc. Nail. Acad. Sci. USA 95: 13056-13061.
44. TOYOSAWA, S., C. O'uUiGiN, H. TICIIY andj. KLEIN, 1999 Characterization of dentin matrix protein 1 gene in crocodilia: implications for the evolution of mineralized tissues. Gene (in press).
45. VAN BOKHOVEN, H., R. B. RAWSON, G. F. MERKZ, F. P. CRE.MERS and M. C. SEAIIRA, 1996 cDNA cloning and chromosomal localization of the genes encoding the alpha-and beta-subunits of human Rab geranylgeranyl transfcrasc: the 3' end of the alpha-subunit gene overlaps with the transglutaminase 1 gene promoter. Genomics 38: 133-140.
46. WILLIAMS, T., and M. FRIED, 1986 A mouse locus at which transcription from both DNA strands produces mRNAs complementary at their 3' ends. Nature 322: 275-279.
47. WILLISON, K. R., K. DUDLEY and J. POTTER, 1986 Molecular cloning and sequence analysis of a haploid expressed gene encoding t complex polypeptidc 1. Cell 44: 727-738.
48. WILLISON, K., A. KELLY, K. DUDLEY, P. GOODEELLOW, N. SPURR et al., 1987 The human homologue of the mouse t-complex gene, TCP1, is located on chromosome 6 but is not near the HLA region. EMBOJ. 6: 1967-1974.
49. WILSON, D. E., and D.-A. M. REEDER, 1993 Mammal Species of the World. A Taxonomic and Geographic Reference. Smithsonian Institute Press, Washington, D.C.
50. YAEEE, M. B., G. W. FARR, D. MIKLOS, A. L. HORWICII, M. L. STERNLICIIT et al., 1992 TCP1 complex is a molecular chaperone in tubulin biogenesis. Nature 358: 245-248.