From NMR chemical shifts to amino acid types: Investigation of the predictive power carried by nuclei

Journal of Biomolecular NMR

Volumn 30, Issue 1, 2004, Pages 47-60

  Marin, Antoine ^a   Malliavin, Thérèse E ^a   Nicolas, Pierre ^b,c   Delsuc, Marc André ^d  

^a INST DE BIOLOGIE PHYSICO CHIMIQUE   (France)

^b INRA Institut National de la Recherche Agronomique   (France)

^c CNRS   (France)

^d CENTRE DE BIOCHIMIE STRUCTURALE   (France)

Author keywords

Automatic assignment; Bayes theorem; Bayesian decision; BioMagResBank; Chemical shift; NMR; Structural proteomics

Indexed keywords

AMINO ACID ANALYSIS; ARTICLE; AUTOMATION; BAYES THEOREM; CALCULATION; COMPUTER LANGUAGE; COMPUTER PROGRAM; COMPUTER SYSTEM; CONTROLLED STUDY; CORRELATION ANALYSIS; CORRELATION COEFFICIENT; MATHEMATICAL COMPUTING; PREDICTION; PRIORITY JOURNAL; PROBABILITY; PROTON NUCLEAR MAGNETIC RESONANCE; SENSITIVITY AND SPECIFICITY;

AMINO ACIDS; BAYES THEOREM; MATHEMATICS; MODELS, THEORETICAL; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PREDICTIVE VALUE OF TESTS; PROTEOMICS; SENSITIVITY AND SPECIFICITY; SOFTWARE;

EID: 4644304302     PISSN: 09252738     EISSN: None     Source Type: Journal    
DOI: 10.1023/B:JNMR.0000042948.12381.88     Document Type: Article

References (23)

1. Auguin, D., Catherinot, V., Malliavin, T., Pons, J.-L. and Delsuc, M.-A. (2003) Spectroscopy, 17, 559-568.
2. Cornilescu, G., Delaglio, F. and Bax, A. (1999) J. Biomol. NMR, 13, 289-302.
3. Doetsch, V. and Wagner, G. (1998) Curr. Opin. Struct. Biol., 8, 619-623.
4. Galassi, M., Davies, J., Theiler, J., Gough, B., Jungman, G., Booth, M. and Rossi, F. (2002) GNU Scientific Library Reference Manual, ISBN 095416170X.
5. Gronwald, W., Willard, L., Jellard, T., Boyko, R., Rajarathnam, K., Wishart, D., Sonnichsen, F. and Sykes, B. (1998) J. Biomol. NMR, 12, 395-405.
6. Grzesiek, S. and Bax, A. (1993) J. Biomol. NMR, 3, 185-204.
7. Ikura, M., Kay, L. and Bax, A. (1990) Biochemistry, 29, 4659-4667.
8. Kashiwabara, T., Masuda, S., Nakajima, K. and Fujisawa, T. (1992) J. Algorithms, 13, 161-174.
9. Labudde, D., Leitner, D., Kruger, M. and Oschkinat, H. (2003) J. Biomol. NMR, 25, 41-53.
10. Mahalanobis, P. (1930) J. Asiatic Soc. Benagal, 26, 541.
11. McCoy, M. and Wyss, D. (2002) J. Am. Chem. Soc., 124, 11758-11763.
12. Montelione, G., Zheng, D., Huang, Y., Gunsalus, K. and Szyperski, T. (2000) Nat. Struct. Biol., 7, 982-985.
13. Morgenthaler, S. (1997) Introduction à la statistique, Presses polytechniques et universitaires romandes.
14. Pearson, J., Wang, J., Markley, J., Le, H. and Oldfield, E. (1995) J. Am. Chem. Soc., 117, 8823-8829.
15. Pearson, W. (2000) Meth. Mol. Biol., 132, 185-219.
16. Pons, J.-L. and Delsuc, M.-A. (1999) J. Biomol. NMR, 15, 15-26.
17. Ramaen, O., Masscheleyn, S., Duffieux, F., Pamlard, O., Oberkampf, M., Lallemand, J.-Y., Stoven, V. and Jacquet, E. (2003) Biochem. J., 376, 749-756.
18. Sattler, M., Schleucher, J. and Griesinger, C. (1999) Prog. NMR Spectrosc., 34, 93-158.
19. Seavey, B., Farr, E., Westler, W. and Markley, J. (1991) J. Biomol. NMR, 1, 217-236.
20. Williamson, M., Kikuchi, J. and Asakura, T. (1995) J. Mol. Biol., 247, 541-546.
21. Wishart, D. and Sykes, B. (1994) J. Biomol. NMR, 4, 171-180.
22. Wishart, D., Watson, M., Boyko, R. and Sykes, B. (1997) J. Biomol. NMR, 10, 329-336.
23. Wüthrich, K. (1986) NMR of Proteins and Nucleic Acids, Wiley-Interscience.