SCOPUS 정보 검색 플랫폼

Bioinformatics

Volumn 16, Issue 8, 2000, Pages 665-677

A systematic approach to dynamic programming in bioinformatics

(1) Giegerich, R a

a BIELEFELD UNIVERSITY (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

RNA;

ALGORITHM; COMPUTER PROGRAM; CONTROLLED STUDY; EVALUATION; GENETIC ANALYSIS; HUMAN; INFORMATION SCIENCE; METHODOLOGY; MOLECULAR BIOLOGY; MOLECULAR GENETICS; PREDICTION; PRIORITY JOURNAL; PRODUCTIVITY; REVIEW; RNA STRUCTURE; SEQUENCE ANALYSIS; SYSTEM ANALYSIS;

EID: 0033729144 PISSN: 13674803 EISSN: 13674811 Source Type: Journal
DOI: 10.1093/bioinformatics/16.8.665 Document Type: Review

Times cited : (62)

References (36)

1
- 85037787173
- The Theory of Parsing, Translation, and Compiling. Prentice-Hall.
- (1972)
- Aho, A.V.¹ Ullman, J.D.²

2
- 0030672551
- Realigner: A program for refining DNA sequence multi-alignments
- In Proceedings of the 1st Conference on Computational Molecular Biology
- (1997) , pp. 9-16
- Anson, E.L.¹ Myers, G.W.²

3
- 85037799727
- The lambda calculus: its syntax and semantics. Studies in Logic and the Foundations of Mathematics. 2nd edn., North-Holland.
- (1984)
- Barendregt, H.P.¹

4
- 85037797735
- Introduction to Functional Programming using Haskell. 2nd edn., Prentice-Hall.
- (1998)
- Bird, R.¹

5
- 0030628597
- Dynamite: A flexible code generating language for dynamic programming methods
- In Proceedings of the 5th Conference on Intelligent Systems for Molecular Biology AAAI Press, Menlo Park, CA, USA
- (1997) , pp. 56-64
- Birney, E.¹ Durbin, R.²

6
- 0000150176
- Tree generating regular systems
- (1969) Information and Control , vol.14 , pp. 217-231
- Brainerd, W.¹

7
- 85037786763
- Introduction to Algorithms. MIT Press, Cambridge, MA, USA.
- (1989)
- Cormen, T.H.¹ Leiserson, C.E.² Rivest, R.L.³

8
- 0007289872
- Biological Sequence Analysis. Cambridge University Press.
- (1998)
- Durbin, R.¹ Eddy, S.² Krogh, A.³ Mitchison, G.⁴

9
- 0028272315
- RNA sequence analysis using covariance models
- (1994) Nucleic Acids Res. , vol.22 , Issue.11 , pp. 2079-2088
- Eddy, S.¹ Durbin, R.²

10
- 85037784636
- A general pattern matching language for specific motifs in RNA secondary structure
- In Proceedings of the 4th European Conference on Theory and Mathematics in Biology and Medicine.
- (1999)
- Evers, D.¹ Giegerich, R.² Kurtz, S.³

11
- 0027234853
- A dynamic programming approach for predicting the exon-intron structure
- (1993) Biosystems , vol.30 , pp. 173-182
- Gelfand, M.S.¹ Roytberg, M.A.²

12
- 0025444826
- Code selection by inversion of order-sorted derivors
- (1990) Theor. Comput. Sci. , vol.73 , pp. 177-211
- Giegerich, R.¹

13
- 85037791888
- A declarative approach to the development of dynamic programming algorithms, applied to RNA folding. Report 98-02 Technische Fakultat, Universitat Bielefeld.
- (1998)
- Giegerich, R.¹

14
- 85037786422
- Towards a discipline of dynamic programming in bioinformatics
- Parts 1 and 2: Sequence comparison and RNA folding. Report 99-05 Technische Fakultat, Universitat Bielefeld,(Lecture Notes).
- (1999) , Issue.PART 1
- Giegerich, R.¹

15
- 0007220798
- An algebraic dynamic programming approach to the analysis of recombinant DNA sequences
- In Proceedings of the First Workshop on Algorithmic Aspects of Advanced Programming Languages
- (1999) , pp. 77-88
- Giegerich, R.¹ Kurtz, S.² Weiller, G.F.³

16
- 0020484488
- An improved algorithm for matching biological sequences
- (1982) J. Mol. Biol. , vol.162 , pp. 705-708
- Gotoh, O.¹

17
- 0007225359
- Algorithms on strings, trees, and sequences. Computer Science and Computational Biology. Cambridge University Press.
- (1997)
- Gusfield, D.¹

18
- 85037800038
- (ed). In Proceedings of the Fifth Annual Symposium on Combinatorial Pattern Matching, Asilomar, California, June 1994 Lecture Notes in Computer Science
- (1994) , vol.807
- Gusfield, D.¹

19
- 0001608632
- Combinatorics of RNA secondary structures
- (1999) Discr. Appl. Math. , vol.89 , pp. 177-207
- Hofacker, I.L.¹ Schuster, P.² Stadler, P.F.³

20
- 84974183714
- Higher order functions for parsing
- (1992) Journal of Functional Programming, , vol.3 , Issue.2 , pp. 323-343
- Hutton, G.¹

21
- 85037788574
- Estimating the probability of approximate matches
- In Proceedings of Combinatorial Pattern Matching 1997 Springer Lecture Notes in Computer Science 1246.
- (1997)
- Kurtz, S.¹ Myers, G.W.²

22
- 0029186104
- An optimized parsing algorithm well suited to RNA folding
- In Proceedings of the 3rd Conference on Intelligent Systems for Molecular Biology AAAI Press, Menlo Park, CA, USA
- (1995) , pp. 222-230
- Lefebvre, F.¹

23
- 0030333721
- A grammar-based unification of several alignment and folding algorithms
- In Proceedings of the 4th Conference on Intelligent Systems for Molecular Biology AAAI Press, Menlo Park, CA, USA
- (1996) , pp. 143-154
- Lefebvre, F.¹

24
- 0014757386
- A general method applicable to the search for similarities in the amino acid sequence of two proteins
- (1970) J. Mol. Biol. , vol.48 , pp. 443-453
- Needleman, S.B.¹ Wunsch, C.D.²

25
- 85015182436
- Recent methods for RNA modeling using stochastic context-free grammars
- (Gusfield, 1994)
- (1994) , pp. 289-306
- Sakakibara, Y.¹ Brown, M.² Hughey, R.³ Mian, I.S.⁴ Sjolander, K.⁵ Underwood, R.C.⁶ Haussler, D.⁷

26
- 85156239486
- Representing genetic information with formal grammars
- In Proceedings of the 1988 National Conference of the American Association for Artificial Intelligence
- (1988) , pp. 386-391
- Searls, D.B.¹

27
- 0002487729
- Investigating the linguistics of DNA with definite clause grammars
- In Proceedings of the North American Conference on Logic Programming MIT Press
- (1989) , pp. 189-208
- Searls, D.B.¹

28
- 0030821916
- Linguistic approaches to biological sequences
- (1997) , vol.13 , Issue.4 , pp. 333-344
- Searls, D.B.¹

29
- 0029185664
- Automata-theoretic models of mutation and alignment
- In Proceedings of the Third Conference on Intelligent Systems for Molecular Biology, ISMB 95 AAAI Press, Menlo Park, CA, USA
- (1995) , pp. 341-349
- Searls, D.B.¹ Murphy, K.P.²

30
- 40849099796
- Comparison of biosequences
- (1981) Adv. Appl. Math. , vol.2 , pp. 482-489
- Smith, T.F.¹ Waterman, M.S.²

31
- 0027229632
- Identification of coding regions in genomic DNA: An application of dynamic programming and neural networks
- (1993) Nucleic Acids Res. , vol.21 , pp. 607-613
- Snyder, E.E.¹ Stormo, G.D.²

32
- 0027968068
- CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
- (1994) Nucleic Acids Res. , vol.22 , Issue.22 , pp. 4673-4680
- Thompson, J.D.¹ Higgins, D.G.² Gibson, T.J.³

33
- 0007224503
- Introduction to Computational Biology. Maps, Sequences and Genomes. Chapman and Hall, London, UK.
- (1995)
- Waterman, M.S.¹

34
- 0031892518
- Phylogenetic profiles: A graphical method for detecting genetic recombinations in homologous sequences
- (1998) Mol. Biol. Evol. , vol.15 , Issue.3 , pp. 326-335
- Weiller, G.F.¹

35
- 0024477261
- On finding all suboptimal foldings of an RNA molecule
- (1989) Science , vol.244 , pp. 48-52
- Zuker, M.¹

36
- 0000616205
- RNA secondary structures and their prediction
- (1984) Bull. Math. Biol. , vol.46 , pp. 591-621
- Zuker, M.¹ Sankoff, S.²

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