Abundance of 4Fe-4S motifs in the genomes of methanogens and other prokaryotes

FEMS Microbiology Letters

Volumn 239, Issue 1, 2004, Pages 117-123

  Major, Tiffany A ^a   Burd, Henry ^b   Whitman, William B ^a  

^a UNIVERSITY OF GEORGIA   (United States)

^b Integrated Genomics Inc   (United States)

Author keywords

Anaerobes; Archaea; Ferredoxin; Hyperthermophiles; Iron sulfur; Methanogens

Indexed keywords

IRON; OXIDOREDUCTASE; SULFUR;

ANAEROBIC GROWTH; ARCHAEBACTERIUM; ARTICLE; BACTERIAL GENETICS; CORRELATION ANALYSIS; DESULFITOBACTERIUM HAFNIENSE; GENOME; GENOME SIZE; GROWTH RATE; METHANOGENESIS; NONHUMAN; OPEN READING FRAME; PHYSIOLOGY; PRIORITY JOURNAL; PROKARYOTE; TEMPERATURE;

AMINO ACID MOTIFS; ANAEROBIOSIS; ARCHAEA; BACTERIA; GENOME, ARCHAEAL; GENOME, BACTERIAL; GENOMICS; HEAT; IRON-SULFUR PROTEINS; METHANE; PHYLOGENY;

ARCHAEA; BACTERIA (MICROORGANISMS); DESULFITOBACTERIUM; DESULFITOBACTERIUM HAFNIENSE; PROKARYOTA;

EID: 4644226216     PISSN: 03781097     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.femsle.2004.08.027     Document Type: Article

References (11)

1. F.R. Blattner, G. Plunkett III, C.A. Bloch, N.T. Perna, V. Burland, M. Riley, J. Collado-Vides, J.D. Glasner, C.K. Rode, G.F. Mayhew, J. Gregor, N.W. Davis, H.A. Kirkpatrick, M.A. Goeden, D.J. Rose, B. Mau, and Y. Shao The complete genome sequence of Escherichia coli K-12 Science 277 1997 1453 1474
2. C.J. Bult, O. White, G.J. Olsen, L. Zhou, R.D. Fleischmann, G.G. Sutton, J.A. Blake, L.M. FitzGerald, R.A. Clayton, J.D. Gocayne, A.R. Kerlavage, B.A. Dougherty, J.F. Tomb, M.D. Adams, C.I. Reich, R. Overbeek, E.F. Kirkness, K.G. Weinstock, J.M. Merrick, A. Glodek, J.L. Scott, N.S.M. Geoghagen, J.F. Weidman, J.L. Fuhrmann, D. Nguyen, T.R. Utterback, J.M. Kelley, J.D. Peterson, P.W. Sadow, M.C. Hanna, M.D. Cotton, K.M. Roberts, M.A. Hurst, B.P. Kaine, M. Borodovsky, H.-P. Klenk, C.M. Fraser, H.O. Smith, C.R. Woese, and J.C. Venter Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii Science 273 1996 1058 1073
3. R.M. Daniel, and M.J. Danson Did primitive microorganisms use nonhem iron proteins in place of NAD/P? J. Mol. Evol. 40 1995 559 563
4. J.E. Galagan, C. Nusbaum, A. Roy, M.G. Endrizzi, P. Macdonald, W. FitzHugh, S. Calvo, R. Engels, S. Smirnov, D. Atnoor, A. Brown, N. Allen, J. Naylor, N. Stange-Thomann, K. DeArellano, R. Johnson, L. Linton, P. McEwan, K. McKernan, J. Talamas, A. Tirrell, W. Ye, A. Zimmer, R.D. Barber, I. Cann, D.E. Graham, D.A. Grahame, A.M. Guss, R. Hedderich, C. Ingram-Smith, H.C. Kuettner, J.A. Krzycki, J.A. Leigh, W. Li, J. Liu, B. Mukhopadhyay, J.N. Reeve, K. Smith, T.A. Springer, L.A. Umayam, O. White, R.H. White, E. Conway de Macario, J.G. Ferry, K.F. Jarrell, H. Jing, A.J.L. Macario, I. Paulsen, M. Pritchett, K.R. Sowers, R.V. Swanson, S.H. Zinder, E. Lander, W.W. Metcalf, and B. Birren The genome of M. acetivorans reveals extensive metabolic and physiological diversity Genome Res. 12 2002 532 542
5. R.B. Gennis, and V. Stewart Respiration F.C. Neidhardt Escherichia coli and Salmonella: Cellular and Molecular Biology 2nd Edn. 1996 American Society for Microbiology Washington, DC 217 261
6. D.E. Graham, N. Kyrpides, I.J. Anderson, R. Overbeek, and W.B. Whitman Genome of (Methanocaldococcus) Methanococcus jannaschii Methods Enzymol. 330 2001 40 123
7. J.F. Heidelberg, J.A. Eisen, W.C. Nelson, R.A. Clayton, M.L. Gwinn, R.J. Dodson, D.H. Haft, E.K. Hickey, J.D. Peterson, L. Umayam, S.R. Gill, K.E. Nelson, T.D. Read, H. Tettelin, D. Richardson, M.D. Ermolaeva, J. Vamathevan, S. Bass, H. Qin, I. Dragoi, P. Sellers, L. McDonald, T. Utterback, R.D. Fleishmann, W.C. Nierman, O. White, S.L. Salzberg, H.O. Smith, R.R. Colwell, J.J. Mekalanos, J.C. Venter, and C.M. Fraser DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae Nature 406 2000 477 483
8. S. Mukund, and M.W. Adams The novel tungsten-iron-sulfur protein of the hyperthermophilic archaebacterium, Pyrococcus furiosus, is an aldehyde ferredoxin oxidoreductase. Evidence for its participation in a unique glycolytic pathway J. Biol. Chem. 266 1991 14208 14216
9. L.J. Shimkets Structure and sizes of genomes of the archaea and bacteria F.J. de Bruijn J.R. Lupski G.M. Weinstock Bacterial Genomes: Physical Structure and Analysis 1998 Chapman & Hall New York 5 11
10. D.R. Smith, L.A. Doucette-Stamm, C. Deloughery, H. Lee, J. Dubois, T. Aldredge, R. Bashirzadeh, D. Blakely, R. Cook, K. Gilbert, D. Harrison, L. Hoang, P. Keagle, W. Lumm, B. Pothier, D. Qiu, R. Spadafora, R. Vicaire, Y. Wang, J. Wierzbowski, R. Gibson, N. Jiwani, A. Caruso, D. Bush, H. Safer, D. Patwell, S. Prabhakar, S. McDougall, G. Shimer, A. Goyal, S. Pietrokovski, G.M. Church, C.J. Daniels, J. Mao, P. Rice, J. Nölling, and J.N. Reeve Complete genome sequence of Methanobacterium thermoautotrophicum ΔH: functional analysis and comparative genomics J. Bacteriol. 179 1997 7135 7155
11. C.R. Woese Bacterial evolution Microbiol. Rev. 51 1987 221 271