Analysis of histones, histone variants, and their post-translationally modified forms

Electrophoresis

Volumn 29, Issue 12, 2008, Pages 2516-2532

  Lindner, Herbert H ^a  

^a INNSBRUCK MEDICAL UNIVERSITY   (Austria)

Author keywords

High performance capillary electrophoresis; Histone analysis; Histone modifications; Histone variants; Hydrophilic interaction liquid chromatography

Indexed keywords

CAPILLARY ELECTROPHORESIS; LIQUID CHROMATOGRAPHY; PROTEINS;

EUKARYOTIC CHROMATIN; GENE REPRESSION; GENE-REGULATION; HIGH PERFORMANCE CAPILLARY ELECTROPHORESIS; HISTONE ANALYSE; HISTONE MODIFICATION; HISTONE VARIANTS; HYDROPHILIC INTERACTION LIQUID CHROMATOGRAPHIES; POST-TRANSLATIONAL MODIFICATIONS; STRUCTURAL COMPONENT;

HYDROPHILICITY;

BUFFER; HISTONE;

CAPILLARY ELECTROPHORESIS; CAPILLARY ZONE ELECTROPHORESIS; LIQUID CHROMATOGRAPHY; MICELLAR ELECTROKINETIC CHROMATOGRAPHY; NONHUMAN; PHYSICAL CHEMISTRY; POLYACRYLAMIDE GEL ELECTROPHORESIS; PROTEIN ANALYSIS; PROTEIN PROCESSING; REVERSED PHASE HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; REVIEW; SEPARATION TECHNIQUE;

EID: 46249090762     PISSN: 01730835     EISSN: 15222683     Source Type: Journal    
DOI: 10.1002/elps.200800094     Document Type: Review

References (126)

1. McGhee, J. D., Felsenfeld, G., Annu. Rev. Biochem. 1980, 49, 1115-1156.
2. Van Holde, K., Zlatanova, J., Arents, G., Moudrianakis, E. (Eds.), Elements of Chromatin Structure: Histones, Nucleosomes and Fibres, IRL Press, Oxford, UK 1995.
3. Wolffe, A. P. (Ed.), Chromatin: Structure and Function, Academic Press, New York 1998, pp. 7-157.
4. Kornberg, R. D., Annu. Rev. Biochem. 1977, 46, 931-954.
5. Thomas, J. O., Curr. Opin. Cell Biol. 1999, 11, 312-317.
6. Luger, K., Richmond, T. J., Curr. Opin. Genet. Dev. 1998, 8, 140-146.
7. Kouzarides, T., Cell 2007, 128, 693-705.
8. Lindner, H., Helliger, W., Exp. Gerontol. 2001, 36, 1551-1563.
9. Lindner, H., Sarg, B., Hoertnagl, B., Helliger, W., J. Biol. Chem. 1998, 273, 13324-13330.
10. Talasz, H., Helliger, W., Puschendorf, B., Lindner, H., Biochemistry 1996, 35, 1761-1767.
11. Gurley, L. R., D'Anna, J. A., Barham, S. S., Deaven, L. L., Tobey, R. A., Eur. J. Biochem. 1978, 84, 1-15.
12. Ajiro, K., Borun, T. W., Cohen, L. H., Biochemistry 1981, 20, 1445-1454.
13. Mizzen,C.A., Dou, Y., Liu, Y., Cook, R. G. et al., J. Biol. Chem. 1999, 274, 14533-14536.
14. Sarg, B., Helliger, W., Talasz, H., Forg, B., Lindner, H. H., J. Biol. Chem. 2006, 281, 6573-6580.
15. Green, G. R., Lee, H. J., Poccia, D. L., J. Biol. Chem. 1993, 268, 11247-11255.
16. Hill, C. S., Rimmer, J. M., Green, B. N., Finch, J. T., Thomas, J. O., EMBO J. 1991, 10, 1939-1948.
17. Berger, S. L., Curr. Opin. Genet. Dev. 2002, 12, 142-148.
18. Jenuwein, T., Allis, C. D., Science 2001, 293, 1074-1080.
19. Strahl, B. D., Allis, C. D., Nature 2000, 403, 41-45.
20. Turner, B. M., BioEssays 2000, 22, 836-845.
21. Bonenfant, D., Coulot, M., Towbin, H., Schindler, P., van Oostrum, J., Mol. Cell. Proteomics 2006, 5, 541-552.
22. Murray, K. (Ed.), The Nucleohistones, Holden-Day, San Francisco 1964, p. 21.
23. Neelin, J. M., Connell, G. E., Biochim. Biophys. Acta 1959, 31, 539-541.
24. Bonner, W. M., J. Cell. Biol. 1975, 64, 421-430.
25. Panyim, S., Chalkley, R., Arch. Biochem. Biophys. 1969, 130, 337-346.
26. Franklin, S. G., Zweidler, A., Nature 1977, 266, 273-275.
27. Bonner, W. M., West, M. H., Stedman, J. D., Eur. J. Biochem. 1980, 109, 17-23.
28. D'Incalci, M., Allavena, P., Wu, R. S., Bonner, W. M., Eur. J. Biochem. 1986, 154, 273-279.
29. Davie, J. R., Anal. Biochem. 1982, 120, 276-281.
30. Lennox, R. W., Cohen, L. H., J. Biol. Chem. 1983, 258, 262-268.
31. Lennox, R. W., Cohen, L. H., Dev. Biol. 1984, 103, 80-84.
32. Lennox, R. W., Oshima, R. G., Cohen, L. H., J. Biol. Chem. 1982, 257, 5183-5189.
33. Jorgenson, J. W., Lukacs, K. D., Science 1983, 222, 266-272.
34. Gurley, L. R., London, J. E., Valdez, J. G., J. Chromatogr. 1991, 559, 431-443.
35. Bossi, A., Gelfi, C., Orsi, A., Righetti, P. G., J. Chromatogr. A 1994, 666, 121-128.
36. Hjertén, S., Valtcheva, L., Elenbring, K., Eaker, D., J. Liq. Chromatogr. 1989, 12, 2471-2499.
37. Liao, J. L., Abramson, J., Hjertén, S., J. Cappil. Elec. Microchip Technol. 1995, 2, 191-196.
38. Aguilar, C., Hofte, A. J., Tjaden, U. R., van der Greef, J., J. Chromatogr. A 2001, 926, 57-67.
39. Gotti, R., Calleri, E., Massolini, G., Furlanetto, S., Cavrini, V., Electrophoresis 2006, 27, 4746-4754.
40. Olmo, S., Gotti, R., Naldi, M., Andrisano, V. et al., Anal. Bioanal. Chem. 2008, 390, 1881-1888.
41. Wiktorowicz, J. E., Colburn, J. C., Electrophoresis 1990, 71, 769-773.
42. Mizzen, C. A., McLachlan, D. R., Electrophoresis 2000, 21, 2359-2367.
43. Gulcev, M. D., Lucy, C. A., Anal. Chem. 2008, 80, 1806-1812.
44. Lindner, H., Helliger, W., in: Parvez, H. (Ed.), Progress in HPLC-HPCE, VSP Science Press, Zint, The Netherlands 1997, pp. 97-113.
45. Lindner, H., Helliger, W., Dirschlmayer, A., Jaquemar, M., Puschendorf, B., Biochem. J. 1992, 283, 467-471.
46. Lindner, H., Helliger, W., Dirschimayer, A., Talasz, H. et al., J. Chromatogr. 1992, 608, 211-216.
47. Lindner, H., Helliger, W., Sarg, B., Meraner, C., Electrophoresis 1995, 16, 604-610.
48. Lindner, H., Wurm, M., Dirschimayer, A., Sarg, B., Helliger, W., Electrophoresis 1993, 14, 480-485.
49. Sarg, B., Helliger, W., Hoertnagl, B., Puschendorf, B., Lindner, H., Arch. Biochem. Biophys. 1999, 372, 333-339.
50. Fraga, M. F., Ballestar, E., Villar-Garea, A., Boix-Chornet, M. et al., Nat. Genet. 2005, 37, 391-400.
51. Turner, B. M., BioEssays 2000, 22, 836-845.
52. Bonenfant, D., Coulot, M., Towbin, H., Schindler, P., van Oostrum, J., Mol. Cell. Proteomics 2006, 5, 541-552.
53. Murray, K. (Ed.), The Nucleohistones, Holden-Day, San Francisco 1964, p. 21.
54. Neelin, J. M., Connell, G. E., Biochim. Biophys. Acta 1959, 31, 539-541.
55. Bonner, W. M., J. Cell. Biol. 1975, 64, 421-430.
56. Panyim, S., Chalkley, R., Arch. Biochem. Biophys. 1969, 130, 337-346.
57. Franklin, S. G., Zweidler, A., Nature 1977, 266, 273-275.
58. Bonner, W. M., West, M. H., Stedman, J. D., Eur. J. Biochem. 1980, 109, 17-23.
59. D'Incalci, M., Allavena, P., Wu, R. S., Bonner, W. M., Eur. J. Biochem. 1986, 154, 273-279.
60. Davie, J. R., Anal. Biochem. 1982, 120, 276-281.
61. Lennox, R. W., Cohen, L. H., J. Biol. Chem. 1983, 258, 262-268.
62. Lennox, R. W., Cohen, L. H., Dev. Biol. 1984, 103, 80-84.
63. Lennox, R. W., Oshima, R. G., Cohen, L. H., J. Biol. Chem. 1982, 257, 5183-5189.
64. Jorgenson, J. W., Lukacs, K. D., Science 1983, 222, 266-272.
65. Gurley, L. R., London, J. E., Valdez, J. G., J. Chromatogr. 1991, 559, 431-443.
66. Bossi, A., Gelfi, C., Orsi, A., Righetti, P. G., J. Chromatogr. A 1994, 666, 121-128.
67. Hjertén, S., Valtcheva, L., Elenbring, K., Eaker, D., J. Liq. Chromatogr. 1989, 12, 2471-2499.
68. Liao, J. L., Abramson, J., Hjertén, S., J. Cappil. Elec. Microchip Technol. 1995, 2, 191-196.
69. Aguilar, C., Hofte, A. J., Tjaden, U. R., van der Greef, J., J. Chromatogr. A 2001, 926, 57-67.
70. Gotti, R., Calleri, E., Massolini, G., Furlanetto, S., Cavrini, V., Electrophoresis 2006, 27, 4746-4754.
71. Olmo, S., Gotti, R., Naldi, M., Andrisano, V. et al., Anal. Bioanal. Chem. 2008, 390, 1881-1888.
72. Wiktorowicz, J. E., Colburn, J. C., Electrophoresis 1990, 71, 769-773.
73. Mizzen, C. A., McLachlan, D. R., Electrophoresis 2000, 21, 2359-2367.
74. Gulcev, M. D., Lucy, C. A., Anal. Chem. 2008, 80, 1806-1812.
75. Lindner, H., Helliger, W., in: Parvez, H. (Ed.), Progress in HPLC-HPCE, VSP Science Press, Zint, The Netherlands 1997, pp. 97-113.
76. Lindner, H., Helliger, W., Dirschlmayer, A., Jaquemar, M., Puschendorf, B., Biochem. J. 1992, 283, 467-471.
77. Lindner, H., Helliger, W., Dirschimayer, A., Talasz, H. et al., J. Chromatogr. 1992, 608, 211-216.
78. Lindner, H., Helliger, W., Sarg, B., Meraner, C., Electrophoresis 1995, 16, 604-610.
79. Lindner, H., Wurm, M., Dirschimayer, A., Sarg, B., Helliger, W., Electrophoresis 1993, 14, 480-485.
80. Sarg, B., Helliger, W., Hoertnagl, B., Puschendorf, B., Lindner, H., Arch. Biochem. Biophys. 1999, 372, 333-339.
81. Fraga, M. F., Ballestar, E., Villar-Garea, A., Boix-Chornet, M. et al., Nat. Genet. 2005, 37, 391-400.
82. Enomoto, R., Koyamazaki, R., Maruta, Y., Tanaka, M. et al., Mol. Cell Biol. Res. Commun. 2001, 4, 276-281.
83. Kratzmeier, M., Albig, W., Meergans, T., Doenecke, D., Biochem. J. 1999, 337, 319-327.
84. Lindner, H., Sarg, B., Helliger, W., Jaquemar, M. et al., Fifth International Symposium on High-Performance Capillary Electrophoresis, Orlando 1993.
85. Couppez, M., Martin-Ponthieu, A., Sautiere, P., J. Biol. Chem. 1987, 262, 2854-2860.
86. Huang, H. C., Cole, R. D., J. Biol. Chem. 1984, 259, 14237-14242.
87. Langan, T. A., J. Biol. Chem. 1982, 257, 14835-14846.
88. Matsukawa, T., Adachi, H., Kurashina, Y., Ohba, Y., J. Biochem. 1985, 98, 695-704.
89. Smerdon, M. J., Isenberg, I., Biochemistry 1976, 15, 4233-4242.
90. Bustin, M., Cole, R. D., J. Biol. Chem. 1968, 243, 4500-4505.
91. Cole, R. D., Methods Enzymol. 1989, 170, 524-532.
92. Garcia-Ramirez, M., Dong, F., Ausio, J., J. Biol. Chem. 1992, 267, 19587-19595.
93. Garg, L. C., Reeck, G. R., Protein Expr. Purif. 1998, 14, 155-159.
94. Kinkade, J. M., Jr., J. Biol. Chem. 1969, 244, 3375-3386.
95. Kinkade, J. M., Jr., Cole, R. D., J. Biol. Chem. 1966, 241, 5790-5797.
96. Rice, G. A., Cole, R. D., Protein Expr. Purif. 1990, 1, 87-92.
97. Shannon, M. F., Wells, J. R., J. Biol. Chem. 1987, 262, 9664-9668.
98. D'Anna, J. A., Thayer, M. M., Tobey, R. A., Gurley, L. R., Biochemistry 1985, 24, 2005-2010.
99. Gurley, L. R., D'Anna, J. A., Blumenfeld, M., Valdez, J. G. et al., J. Chromatogr. 1984, 297, 147-165.
100. Gurley, L. R., Prentice, D. A., Valdez, J. G., Spall, W. D., Anal. Biochem. 1983, 131, 465-477.
101. Gurley, L. R., Prentice, D. A., Valdez, J. G., Spall, W. D., J. Chromatogr. 1983, 266, 609-627.
102. Gurley, L. R., Valdez, J. G., Prentice, D. A., Spall, W. D., Anal. Biochem. 1983, 129, 132-144.
103. Helliger, W., Lindner, H., Hauptlorenz, S., Puschendorf, B., Biochem. J. 1988, 255, 23-27.
104. Lindner, H., Helliger, W., Chromatographia 1990, 30, 518-522.
105. Lindner, H., Helliger, W., Puschendorf, B., Anal. Biochem. 1986, 158, 424-430.
106. Lindner, H., Helliger, W., Puschendorf, B., J. Chromatogr. 1986, 357, 301-310.
107. Lindner, H., Helliger, W., Puschendorf, B., J. Chromatogr. 1988, 450, 309-316.
108. Lindner, H., Helliger, W., Puschendorf, B., Biochem. J. 1990, 269, 359-363.
109. Lindner, H., Wesierska-Gadek, J., Helliger, W., Puschendorf, B., Sauermann, G., J. Chromatogr. 1989, 472, 243-249.
110. Helliger, W., Lindner, H., Grubl-Knosp, O., Puschendorf, B., Biochem. J. 1992, 288, 747-751.
111. Certa, U., von Ehrenstein, G., Anal. Biochem. 1981, 118, 147-154.
112. Kurokawa, M., MacLeod, M. C., Anal. Biochem. 1985, 144, 47-54.
113. Parseghian, M. H., Henschen, A. H., Krieglstein, K. G., Hamkalo, B. A., Protein Sci. 1994, 3, 575-587.
114. Garcia, B. A., Shabanowitz, J., Hunt, D. F., Curr. Opin. Chem. Biol. 2007, 11, 66-73.
115. Pesavento, J. J., Garcia, B. A., Streaky, J. A., Kelleher, N. L., Mizzen, C. A., Mol. Cell. Proteomics 2007, 6, 1510-1526.
116. Villar-Garea, A., Imhof, A., Biochim. Biophys. Acta 2006, 1764, 1932-1939.
117. Su, X., Jacob, N. K., Amunugama, R., Lucas, D. M. et al., J. Chromatogr. B 2007, 850, 440-454.
118. Alpert, A. J., J. Chromatogr. 1990, 499, 177-196.
119. Lindner, H., Sarg, B., Helliger, W., J. Chromatogr. A 1997, 782, 55-62.
120. Mizzen, C. A., Methods Enzymol. 2004, 375, 278-297.
121. Mizzen, C. A., Alpert, A. J., Levesque, L., Kruck, T. P., McLachlan, D. R., J. Chromatogr. B 2000, 744, 33-46.
122. Lindner, H., Sarg, B., Grunicke, H., Helliger, W., J. Cancer Res. Clin. Oncol. 1999, 125, 182-186.
123. Lindner, H., Sarg, B., Meraner, C., Helliger, W., J. Chromatogr. A 1996, 743, 137-144.
124. Sarg, B., Helliger, W., Talasz, H., Koutzamani, E., Lindner, H. H., J. Biol. Chem. 2004, 279, 53458-53464.
125. Sarg, B., Koutzamani, E., Helliger, W., Rundquist, I., Lindner, H. H., J. Biol. Chem. 2002, 277, 39195-39201.
126. Garcia, B. A., Pesavento, J. J., Mizzen, C. A., Kelleher, N. L., Nat. Methods 2007, 4, 487-489.