Liquid chromatography mass spectrometry profiling of histones

Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences

Volumn 850, Issue 1-2, 2007, Pages 440-454

  Su, Xiaodan ^a   Jacob, Naduparambil K ^a   Amunugama, Ravindra ^a   Lucas, David M ^a   Knapp, Amy R ^a   Ren, Chen ^a   Davis, Melanie E ^a   Marcucci, Guido ^a   Parthun, Mark R ^a   Byrd, John C ^a   Fishel, Richard ^a   Freitas, Michael A ^a  

^a Human Cancer Genetics Program   (United States)

Author keywords

AU PAGE; Histone; Nano LC MS MS; Post translational modification; RPLC MS

Indexed keywords

CHEMICAL MODIFICATION; DATA ACQUISITION; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; PHASE TRANSITIONS;

AU-PAGE; HISTONE; NANO-LC-MS/MS; POST-TRANSLATIONAL MODIFICATION; RPLC-MS;

PROTEINS;

HISTONE; METHIONINE;

ANIMAL TISSUE; ARTICLE; CONTROLLED STUDY; EXTRACTION; HUMAN; HUMAN CELL; MASS SPECTROMETRY; NONHUMAN; OXIDATION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; REVERSED PHASE LIQUID CHROMATOGRAPHY;

AMINO ACID SEQUENCE; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; ELECTROPHORESIS, POLYACRYLAMIDE GEL; HISTONES; MOLECULAR SEQUENCE DATA; NANOTECHNOLOGY; REPRODUCIBILITY OF RESULTS; TANDEM MASS SPECTROMETRY;

EID: 34247131960     PISSN: 15700232     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jchromb.2006.12.037     Document Type: Article

References (65)

1. Henry K.W., and Berger S.L. Nat. Struct. Biol. 9 (2002) 565
2. Freitas M.A., Sklenar A.R., and Parthun M.R. J. Cell. Biochem. 92 (2004) 691
3. Sullivan S., Sink D.W., Trout K.L., Makalowska I., Taylor P.M., Baxevanis A.D., and Landsman D. Nucl. Acids Res. 30 (2002) 341
4. Edmondson D.G., Davie J.K., Zhou J., Mirnikjoo B., Tatchell K., and Dent S.Y. J. Biol. Chem. 277 (2002) 29496
5. Lo W.S., Trievel R.C., Rojas J.R., Duggan L., Hsu J.Y., Allis C.D., Marmorstein R., and Berger S.L. Mol. Cell 5 (2000) 917
6. Davie J.K., Edmondson D.G., Coco C.B., and Dent S.Y. J. Biol. Chem. 278 (2003) 50158
7. Dyson M.H., Thomson S., Inagaki M., Goto H., Arthur S.J., Nightingale K., Iborra F.J., and Mahadevan L.C. J. Cell. Sci. 118 (2005) 2247
8. Millard C.B., Meier H.L., and Broomfield C.A. Biochim. Biophys. Acta 1224 (1994) 389
9. Kuster B., and Mann M. Curr. Opin. Struct. Biol. 8 (1998) 393
10. Burlingame A.L., Zhang X., and Chalkley R.J. Methods 36 (2005) 383
11. Adams G.W., Mayer P., Medzihradszky K.F., and Burlingame A.L. Methods Enzymol. 258 (1995) 90
12. Galasinski S.C., Louie D.F., Gloor K.K., Resing K.A., and Ahn N.G. J. Biol. Chem. 277 (2002) 2579
13. Zhang L., Eugeni E.E., Parthun M.R., and Freitas M.A. Chromosoma 112 (2003) 77
14. Zhang L., Freitas M.A., Wickham J., Parthun M.R., Klisovic M.I., Marcucci G., and Byrd J.C. J. Am. Soc. Mass Spectrom. 15 (2004) 77
15. Bonenfant D., Coulot M., Towbin H., Schindler P., and van Oostrum J. Mol. Cell. Proteom. 5 (2005) 541
16. Zhang K., and Tang H. J. Chromatogr. B 783 (2003) 173
17. Lindner H., Sarg B., and Helliger W. J. Chromatogr. A 782 (1997) 55
18. Lindner H., Sarg B., Meraner C., and Helliger W. J. Chromatogr. A 743 (1996) 137
19. Thomas C.E., Kelleher N.L., and Mizzen C.A. J. Proteome. Res. 5 (2006) 240
20. Siuti N., Roth M.J., Mizzen C.A., Kelleher N.L., and Pesavento J.J. J. Proteome. Res. 5 (2006) 233
21. Boyne II M.T., Pesavento J.J., Mizzen C.A., and Kelleher N.L. J. Proteome. Res. 5 (2006) 248
22. Roychowdhury S., Baiocchi R.A., Vourganti S., Bhatt D., Blaser B.W., Freud A.G., Chou J., Chen C.S., Xiao J.J., Parthun M., Chan K.K., Eisenbeis C.F., Ferketich A.K., Grever M.R., and Caligiuri M.A. J. Natl. Cancer Inst. 96 (2004) 1447
23. Liu S., Shen T., Huynh L., Klisovic M.I., Rush L.J., Ford J.L., Yu J., Becknell B., Li Y., Liu C., Vukosavljevic T., Whitman S.P., Chang K.S., Byrd J.C., Perrotti D., Plass C., and Marcucci G. Cancer Res. 65 (2005) 1277
24. Sures I., and Gallwitz D. Biochemistry 19 (1980) 943
25. Simon R.H., and Felsenfeld G. Nucl. Acids Res. 6 (1979) 689
26. Ren C., Ghoshal K., Zhang L., Parthun M.R., Jacob S.T., and Freitas M.A. J. Am. Soc. Mass. Spectrom. 16 (2005) 1641
27. Nicolas O., Farenc C., Calas M., Vial H.J., and Bressolle F. Clin. Chem. 51 (2005) 593
28. Argirov O.K., Lin B., and Ortwerth B.J. J. Biol. Chem. 279 (2004) 6487
29. Karpova M.B., Schoumans J., Ernberg I., Henter J.I., Nordenskjold M., and Fadeel B. Leukemia 19 (2005) 159
30. Drexler H.G., and Minowada J. Leuk. Lymphoma. 31 (1998) 305
31. Canavan T.P., and Doshi N.R. Am. Fam. Physician 61 (2000) 1369
32. Fujitaki J.M., Fung G., Oh E.Y., and Smith R.A. Biochemistry 20 (1981) 3658
33. Ausio J., Abbott D.W., Wang X., and Moore S.C. Biochem. Cell. Biol. 79 (2001) 693
34. Redon C., Pilch D., Rogakou E., Sedelnikova O., Newrock K., and Bonner W. Curr. Opin. Genet. Dev. 12 (2002) 162
35. Goll M.G., and Bestor T.H. Genes Dev. 16 (2002) 1739
36. Turner B.M. Cell 111 (2002) 285
37. Ahn S.H., Cheung W.L., Hsu J.Y., Diaz R.L., Smith M.M., and Allis C.D. Cell 120 (2005) 25
38. Zhu B., Zheng Y., Pham A.D., Mandal S.S., Erdjument-Bromage H., Tempst P., and Reinberg D. Mol. Cell 20 (2005) 601
39. Cao R., Tsukada Y.I., and Zhang Y. Mol. Cell 20 (2005) 845
40. Benson L.J., Gu Y., Yakovleva T., Tong K., Barrows C., Strack C.L., Cook R.G., Mizzen C.A., and Annunziato A.T. J. Biol. Chem. 281 (2006) 9287
41. Franklin S.G., and Zweidler A. Nature 266 (1977) 273
42. Pusarla R.H., and Bhargava P. FEBS J. 272 (2005) 5149
43. Ahmad K., and Henikoff S. Proc. Natl. Acad. Sci. USA 99 Suppl 4 (2002) 16477
44. Lindner H., Helliger W., and Puschendorf B. J. Chromatogr. 450 (1988) 309
45. Camerini-Otero R.D., and Felsenfeld G. Proc. Natl. Acad. Sci. USA 74 (1977) 5519
46. Ren C., Zhang L., Freitas M.A., Ghoshal K., Parthun M.R., and Jacob S.T. J. Am. Soc. Mass Spectrom. 16 (2005) 1641
47. Zhang K., Williams K.E., Huang L., Yau P., Siino J.S., Bradbury E.M., Jones P.R., Minch M.J., and Burlingame A.L. Mol. Cell. Proteom. 1 (2002) 500
48. Sarg B., Helliger W., Talasz H., Koutzamani E., and Lindner H.H. J. Biol. Chem. 279 (2004) 53458
49. Talasz H., Lindner H.H., Sarg B., and Helliger W. J. Biol. Chem. 280 (2005) 38814
50. Wang Y., Wysocka J., Sayegh J., Lee Y.H., Perlin J.R., Leonelli L., Sonbuchner L.S., McDonald C.H., Cook R.G., Dou Y., Roeder R.G., Clarke S., Stallcup M.R., Allis C.D., and Coonrod S.A. Science 306 (2004) 279
51. Shechter Y. J. Biol. Chem. 261 (1986) 66
52. Brot N., and Weissbach H. Arch. Biochem. Biophys. 223 (1983) 271
53. Brot N., and Weissbach H. Biofactors 3 (1991) 91
54. Brot N., Weissbach L., Werth J., and Weissbach H. Proc. Natl. Acad. Sci. USA 78 (1981) 2155
55. Anantharamaiah G.M., Hughes T.A., Iqbal M., Gawish A., Neame P.J., Medley M.F., and Segrest J.P. J. Lipid Res. 29 (1988) 309
56. Linder C., and Thoma F. Mol. Cell. Biol. 14 (1994) 2822
57. Zlatanova J., and Van Holde K. J. Cell. Sci. 103 Pt 4 (1992) 889
58. Mizzen C.A., Dou Y., Liu Y., Cook R.G., Gorovsky M.A., and Allis C.D. J. Biol. Chem. 274 (1999) 14533
59. Dou Y., Mizzen C.A., Abrams M., Allis C.D., and Gorovsky M.A. Mol. Cell 4 (1999) 641
60. Garcia B.A., Busby S.A., Barber C.M., Shabanowitz J., Allis C.D., and Hunt D.F. J. Proteome. Res. 3 (2004) 1219
61. Bonenfant D., Coulot M., Towbin H., Schindler P., and van Oostrum J. Mol. Cell Proteom. (2005)
62. Naldi M., Andrisano V., Fiori J., Calonghi N., Pagnotta E., Parolin C., Pieraccini G., and Masotti L. J. Chromatogr. A 1129 (2006) 73
63. Albig W., Kioschis P., Poustka A., Meergans K., and Doenecke D. Genomics 40 (1997) 314
64. Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Young A.C., Shevchenko Y., Bouffard G.G., Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., and Marra M.A. Proc. Natl. Acad. Sci. USA 99 (2002) 16899
65. A. Halleck, L. Ebert, M. Mkoundinya, M. Schick, S. Eisenstein, P. Neubert, K. Kstrang, R. Schatten, B. Shen, S. Henze, W. Mar, B. Korn, D. Zuo, Y. Hu, J. LaBaer, RZPD Deutsches Ressourcenzentrum fuer Genomforschung GmbH, Im Neuenheimer Feld 580, D-69120 Heidelberg, Germany, 2004.