Quantitative evaluation of DNA methylation patterns for ALVE and TVB genes in a neoplastic disease susceptible and resistant chicken model

PLoS ONE

Volumn 3, Issue 3, 2008, Pages

  Yu, Ying ^a   Zhang, Huanmin ^b   Tian, Fei ^a   Bacon, Larry ^b   Zhang, Yuan ^c   Zhang, Wensheng ^a   Song, Jiuzhou ^a  

^a UNIVERSITY OF MARYLAND   (United States)

^b AGRICULTURAL RESEARCH SERVICE   (United States)

^c CHINA AGRICULTURAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; MESSENGER RNA; PROTEIN ALVE; PROTEIN TVE; VIRUS PROTEIN; VIRUS RECEPTOR;

ANIMAL TISSUE; ARTICLE; BLOOD; BREEDING; CANCER SUSCEPTIBILITY; CHICKEN; CPG ISLAND; DNA METHYLATION; FEMALE; GENE EXPRESSION; GENE LOCUS; HYPOTHALAMUS; INBRED STRAIN; LIVER; NEOPLASM; NONHUMAN; NUCLEOTIDE SEQUENCE; PROMOTER REGION; QUANTITATIVE ANALYSIS; SPLEEN; ANIMAL; AVIAN LEUKOSIS ONCOVIRUS; BIRD DISEASE; CLASSIFICATION; DISEASE PREDISPOSITION; EVALUATION; GENETICS; LONG TERMINAL REPEAT; METABOLISM; PHYSIOLOGY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; VIROLOGY;

AVES; AVIAN LEUKOSIS VIRUS; GALLUS GALLUS;

ANIMALS; AVIAN LEUKOSIS; AVIAN LEUKOSIS VIRUS; CHICKENS; CPG ISLANDS; DISEASE SUSCEPTIBILITY; DNA METHYLATION; FEMALE; HYPOTHALAMUS; LIVER; NEOPLASMS; PROMOTER REGIONS (GENETICS); RECEPTORS, VIRUS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, MESSENGER; SPLEEN; TERMINAL REPEAT SEQUENCES;

EID: 45849144802     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0001731     Document Type: Article

References (48)

1. Egger G, Liang G, Aparicio A, Jones PA (2004) Epigenetics in human disease and prospects for epigenetic therapy. Nature 429: 457-463.
2. Weber AP, Weber KH, I., Stadler MB, Rainos L, Carr KS, et al. (2007) Sampling Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the Arabidopsis transcriptorric with massively parallel pyrosequencinghuman genome. Plant PhysiolNat Genet 14439: 32-42457-42466.
3. Jeltsch A, Friedrich T, Roth M (1998) Kinetics of methylation and binding of DNA by the EcoRV adenine-N6 methyltransferase. J Mol Biol 275: 747-758.
4. Scholzova E, Malik R, Sevcik J, Kleibl Z (2007) RNA regulation and cancer development. Cancer Lett 246: 12-23.
5. Shames DS, Minna JD, Gazdar AF (2007) DNA methylation in health, disease, and cancer. Curr Mol Med 7: 85-102.
6. Shi H, Gun J, Duff DJ, Rahmatpanah F, Chitima-Matsiga R, et al. (2007) Discovery of novel epigenetic markers in non-Hodgkin's lymphoma. Carcinogenesis 28: 60-70.
7. Widschwendter M, Fiegl H, Egle D, Mueller-Holzner E, Spizzo G, et al. (2007) Epigenetic stem cell signature in cancer. Nat Genet 39: 157-158.
8. Davis TL, Tremblay KD, Bartolomei MS (1998) Imprinted expression and methylation of the mouse H19 gene are conserved in extraembryonic lineages. Dev Genet 23: 111-118.
9. Davis T, Kirk D, Rinaldi A, Burden RH, Adams RL (1985) Delayed methylation and the matrix bound DNA methylase. Biochem Biophys Res Commun 126: 678-684.
10. Jelinic P, Shaw P (2006) Loss of imprinting and cancer. J Pathol.
11. Davis CD, Uthus EO (2004) DNA methylation, cancer susceptibility, and nutrient interactions. Exp Biol Med (Maywood) 229: 988-995.
12. Waterland RA, Michels KB (2007) Epigenetic Epidemiology of the Developmental Origins Hypothesis. Annu Rev Nutr.
13. Nair V (2005) Evolution of Marck's disease - a paradigm for incessant race between the pathogen and the host. Vet J 170: 175-183.
14. Fadly AM, Payne LN (2003) Leukosis/sarcoma group. In Saif YM, Barnes HJHJ, Glisson JR, Fadly AM, Mcdougald LR, eds. Disease of Poultry 11th end: 465-516. Ames, Iowa, USA: Iowa State Press, Blackwell Publishing Company.
15. Crittenden LB, Fadly AM (1985) Responses of chickens lacking or expressing endogenous avian leukosis virus genes to infection with exogenous virus. Poult Sci 64: 454-463.
16. Crittenden LB, Smith EJ, Fadly AM (1984) Influence of endogenous viral (ev) gene expression and strain of exogenous avian leukosis virus (ALV) on mortality and ALV infection and shedding in chickens. Avian Dis 28: 1037-1056.
17. Crittenden LB, Hayward WS, Hanafusa H, Fadly AM (1980) Induction of neoplasms by subgroup E recombinants of exogenous and endogenous avian retroviruses (Rous-associated virus type 60). J Virol 33: 915-919.
18. Cullen BR, Skalka AM, Ju G (1983) Endogenous avian retroviruses contain deficient promoter and leader sequences. Proc Natl Acad Sci U S A 80: 2946-2950.
19. Crittenden LB, Astrin SM, Smith EJ (1983) Independent segregation of ev 10 and ev 11, genetic loci for spontaneous production of endogenous avian retroviruses. Virology 129: 514-516.
20. Borisenko L (2003) Avian enclogenous retroviruses. Folia Biol (Praha) 49: 177-182.
21. Conklin KF (1991) Activation of an endogenous retrovirus enhancer by insertion into a heterologous context. J Virol 65: 2525-2532.
22. Crittenden LB, Smith EJ, Weiss RA, Sarma PS (1974) Host gene control of endogenous avian leukosis virus production. Virology 57: 128-138.
23. Baker B, Robison H, Varmus HE, Bishop JM (1981) Analysis of endogenous avian retrovirus DNA and RNA: viral and cellular determinants of retrovirus gene expression. Virology 114: 8-22.
24. Crittenden LB (1991) Retroviral Elements in the Genome of the Chickens: Implications for Poultry Genetics and Breeding. Critical Reviews in Poultry Biology 3: 73-109.
25. Elleder D, Plachy J, Hejnar J, Geryk J, Svoboda J (2004) Close linkage of genes encoding receptors for subgroups A and C of avian sarcoma/ leucosis virus on chicken chromosome 28. Anim Genet 35: 176-181.
26. Bates P, Young JA, Varmus HE (1993) A receptor for subgroup A Rous sarcoma virus is related to the low density lipoprotein receptor. Cell 74: 1043-1051.
27. Bacon LD, Hunt HD, Cheng HH (2000) A review of the development of chicken fines to resolve genes determining resistance to diseases. Poult Sci 79: 1082-1093.
28. Bacon LD, Ch'ng LK, Spencer J, Benedict AA, Fadly AM, et al. (1986) Tests of association of immunoglobulin allotype genes and viral oncogenesis in chickens. Immunogenetics 23: 213-220.
29. Colella S, Shen L, Baggerly KA, Issa JP, Krahe R (2003) Sensitive and quantitative universal Pyrosequencing methylation analysis of CpG sites. Biotechniques 35: 146-150.
30. Tost J, Gut IG (2006) Analysis of gene-specific DNA methylation patterns by pyrosequencing(r) technology. Methods Mol Biol 373: 89-102.
31. Bacon LD, Fulton JE, Kulkarni GB (2004) Methods for evaluating and developing commercial chicken strains free of endogenous subgroup E avian leukosis virus. Avian Pathol 33: 233-243.
32. Cooper GM, Silverman L (1978) Linkage of the endogenous avian leukosis virus genome of virus-producing chicken cells to inhibitory cellular DNA sequences. Cell 15: 573-577.
33. Bacon LD, Hunt HD, Cheng HH (2000) A review of the development of chicken lines to resolve genes determining resistance to diseases. Poult Sci 79: 1082-1093.
34. Bollati V, Baccarelli A, Hou L, Bonzini M, Fustinoni S, et al. (2007) Changes in DNA methylation patterns in subjects exposed to low-dose benzene. Cancer Res 67: 876-880.
35. Lubbert M, Oster W, Ludwig WD, Ganser A, Mertelsmann R, et al. (1992) A switch toward demethylation is associated with the expression of myeloperoxidase in acute myeloblastic and promyelocytic leukemias. Blood 80: 2066-2073.
36. Waterland RA, Jirtle RL (2003) Transposable elements: targets for early nutritional effects on epigenetic gene regulation. Mol Cell Biol 23: 5293-5300.
37. Conklin KF, Coffin JM, Robinson HL, Groudine M, Eisenman R (1982) Role of methylation in the induced and spontaneous expression of the avian endogenous virus ev-1: DNA structure and gene products. Mol Cell Biol 2: 638-652.
38. Feinberg AP, Ohlsson R, Henikoff S (2006) The epigenetic progenitor origin of human cancer. Nat Rev Genet 7: 21-33.
39. Feinberg AP (2001) Cancer epigeneties takes center stage. Proc Natl Acad Sci U S A 98: 392-394.
40. Slotkin RK, Martienssen R (2007) Transposable elements and the epigenetic regulation of the genome. Nat Rev Genet 8: 272-285.
41. Esteller M (2007) Cancer epigenomics: DNA methylomes and histone-modification maps. Nat Rev Genet 8: 286-298.
42. Rausch JW, Le Grice SF (2007) Purinc analog substitution of the HIV-1 polypurine tract primer defines regions controlling initiation of plus-strand DNA synthesis. Nucleic Acids Res 35: 256-268.
43. Atwood-Moore A, Ejebe K, Levin HL (2005) Specific recognition and cleavage of the plus-strand primer by reverse transcriptase. J Virol 79: 14863-14875.
44. McWilliams MJ, Julias JG, Sarafianos SG, Alvord WG, Arnold E, et al. (2006) Combining mutations in HIV-1 reverse transcriptase with mutations in the HIV-1 polypurine tract affects RNase H cleavages involved in PPT utilization. Virology 348: 378-388.
45. Miles LR, Agresta BE, Khan MB, Tang S, Levin JG, et al. (2005) Effect of polypurine tract (PPT) mutations on human immunodeficiency virus type 1 replication: a virus with a completely randomized PPT retains low infectivity. J Virol 79: 6859-6867.
46. Smith EJ, Cheng HH (1998) Mapping chicken genes using preferential amplification of specific alleles. Microb Comp Genomics 3: 13-20.
47. Zhang HM, Bacon LD, Cheng HH, Hunt HD (2005) Development and validation of a PCR-RFLP assay to evaluate TVB haplotypes coding receptors for subgroup B and subgroup E avian leukosis viruses in White Leghorns. Avian Pathol 34: 324-331.
48. Johnson JA, Heneine W (2001) Characterization of endogenous avian leukosis viruses in chicken embryonic fibroblast substrates used in production of measles and mumps vaccines. J Virol 75: 3605-3612.