-
1
-
-
54249116230
-
Genetic regulatory mechanisms in the synthesis of proteins
-
Jacob,F. and Monod,J. (1961) Genetic regulatory mechanisms in the synthesis of proteins. J. Mol. Biol., 3, 318-356.
-
(1961)
J. Mol. Biol
, vol.3
, pp. 318-356
-
-
Jacob, F.1
Monod, J.2
-
2
-
-
0035135420
-
Regulatory element detection using correlation with expression
-
Bussemaker,H.J., Li,H. and Siggia,E.D. (2001) Regulatory element detection using correlation with expression. Nat. Genet., 27 167-171.
-
(2001)
Nat. Genet
, vol.27
, pp. 167-171
-
-
Bussemaker, H.J.1
Li, H.2
Siggia, E.D.3
-
3
-
-
0345824737
-
Network component analysis: Reconstruction of regulatory signals in biological systems
-
Liao,J.C., Boscolo,R., Yang,Y.L., Tran,L.M., Sabatti,C. and Roychowdhury,V.P. (2003) Network component analysis: Reconstruction of regulatory signals in biological systems. Proc. Natl Acad. Sci. USA 100, 15522-15527.
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 15522-15527
-
-
Liao, J.C.1
Boscolo, R.2
Yang, Y.L.3
Tran, L.M.4
Sabatti, C.5
Roychowdhury, V.P.6
-
4
-
-
15244338624
-
gNCA: A framework for determining transcription factor activity based on transcriptome: Identifiability and numerical implementation
-
Tran,L.M., Brynildsen,M.P., Kao,K.C., Suen,J.K. and Liao,J.C. (2005) gNCA: A framework for determining transcription factor activity based on transcriptome: Identifiability and numerical implementation. Metab. Eng., 7, 128-141.
-
(2005)
Metab. Eng
, vol.7
, pp. 128-141
-
-
Tran, L.M.1
Brynildsen, M.P.2
Kao, K.C.3
Suen, J.K.4
Liao, J.C.5
-
5
-
-
0037174671
-
Transcriptional regulatory networks in Saccharomyces cerevisiae
-
Lee,T.I., Rinaldi,N.J., Robert,F., Odom,D.T., Bar-Joseph,Z., Gerber,G.K., Hannett,N.M., Harbison,C.T., Thompson,C.M., Simon,I. et al. (2002) Transcriptional regulatory networks in Saccharomyces cerevisiae. Science, 298, 799-804.
-
(2002)
Science
, vol.298
, pp. 799-804
-
-
Lee, T.I.1
Rinaldi, N.J.2
Robert, F.3
Odom, D.T.4
Bar-Joseph, Z.5
Gerber, G.K.6
Hannett, N.M.7
Harbison, C.T.8
Thompson, C.M.9
Simon, I.10
-
6
-
-
4544352942
-
Transcriptional regulatory code of a eukaryotic genome
-
Harbison,C.T., Gordon,D.B., Lee,T.I., Rinaldi,N.J., Macisaac,K.D., Danford,T.W., Hannett,N.M., Tagne,J.B., Reynolds,D.B., Yoo,J. et al. (2004) Transcriptional regulatory code of a eukaryotic genome. Nature, 431, 99-104.
-
(2004)
Nature
, vol.431
, pp. 99-104
-
-
Harbison, C.T.1
Gordon, D.B.2
Lee, T.I.3
Rinaldi, N.J.4
Macisaac, K.D.5
Danford, T.W.6
Hannett, N.M.7
Tagne, J.B.8
Reynolds, D.B.9
Yoo, J.10
-
7
-
-
4644326931
-
Genomic analysis of regulatory network dynamics reveals large topological changes
-
Luscombe,N.M., Babu,M.M., Yu,H., Snyder,M., Teichmann,S.A. and Gerstein,M. (2004) Genomic analysis of regulatory network dynamics reveals large topological changes. Nature, 431, 308-312.
-
(2004)
Nature
, vol.431
, pp. 308-312
-
-
Luscombe, N.M.1
Babu, M.M.2
Yu, H.3
Snyder, M.4
Teichmann, S.A.5
Gerstein, M.6
-
8
-
-
33645769260
-
An improved map of conserved regulatory sites for Saccharomyces cerevisiae
-
MacIsaac,K., Wang,T., Gordon,D.B., Gifford,D., Stormo,G. and Fraenkel,E. (2006) An improved map of conserved regulatory sites for Saccharomyces cerevisiae. BMC Bioinformatics, 7, 113.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 113
-
-
MacIsaac, K.1
Wang, T.2
Gordon, D.B.3
Gifford, D.4
Stormo, G.5
Fraenkel, E.6
-
9
-
-
33646948892
-
Dynamic changes in subgraph preference profiles of crucial transcription factors
-
Zhang,Z., Liu,C., Skogerbø,G., Zhu,X., Lu,H., Chen,L., Shi,B., Zhang,Y., Wang,J., Wu,T. et al. (2006) Dynamic changes in subgraph preference profiles of crucial transcription factors. PLoS Comput. Biol., 2, e47.
-
(2006)
PLoS Comput. Biol
, vol.2
-
-
Zhang, Z.1
Liu, C.2
Skogerbø, G.3
Zhu, X.4
Lu, H.5
Chen, L.6
Shi, B.7
Zhang, Y.8
Wang, J.9
Wu, T.10
-
10
-
-
33745431808
-
Deciphering principles of transcription regulation in eukaryotic genomes
-
Nguyen,D.H. and D'Haeseleer,P. (2006) Deciphering principles of transcription regulation in eukaryotic genomes. Mol. Syst. Biol., 2, 2006.0012.
-
(2006)
Mol. Syst. Biol
, vol.2
, pp. 0012
-
-
Nguyen, D.H.1
D'Haeseleer, P.2
-
11
-
-
33745434510
-
Modeling gene expression control using Omes Law
-
Bussemaker,H.J. (2006) Modeling gene expression control using Omes Law. Mol. Syst. Biol., 2, 2006.0013.
-
(2006)
Mol. Syst. Biol
, vol.2
, pp. 0013
-
-
Bussemaker, H.J.1
-
12
-
-
0037119587
-
Stochastic gene expression in a single cell
-
Elowitz,M.B., Levine,A.J., Siggia,E.D. and Swain,P.S. (2002) Stochastic gene expression in a single cell. Science, 297, 1183-1186.
-
(2002)
Science
, vol.297
, pp. 1183-1186
-
-
Elowitz, M.B.1
Levine, A.J.2
Siggia, E.D.3
Swain, P.S.4
-
13
-
-
21144439147
-
Assessing computational tools for the discovery of transcription factor binding sites
-
Tompa,M., Li,N., Bailey,T.L., Church,G.M., De Moor,B., Eskin,E., Favorov,A.V., Frith,M.C., Fu,Y., Kent,W.J. et al. (2005) Assessing computational tools for the discovery of transcription factor binding sites. Nat. Biotech., 23, 137-144.
-
(2005)
Nat. Biotech
, vol.23
, pp. 137-144
-
-
Tompa, M.1
Li, N.2
Bailey, T.L.3
Church, G.M.4
De Moor, B.5
Eskin, E.6
Favorov, A.V.7
Frith, M.C.8
Fu, Y.9
Kent, W.J.10
-
14
-
-
33845341455
-
Locating mammalian transcription factor binding sites: A survey of computational and experimental techniques
-
Elnitski,L., Jin,V.X., Farnham,P.J. and Jones,S.J. (2006) Locating mammalian transcription factor binding sites: A survey of computational and experimental techniques. Genome Res., 16, 1455-1464.
-
(2006)
Genome Res
, vol.16
, pp. 1455-1464
-
-
Elnitski, L.1
Jin, V.X.2
Farnham, P.J.3
Jones, S.J.4
-
15
-
-
33749402653
-
Genome-wide prediction of transcriptional regulatory elements of human promoters using gene expression and promoter analysis data
-
Kim,S.Y. and Kim,Y. (2006) Genome-wide prediction of transcriptional regulatory elements of human promoters using gene expression and promoter analysis data. BMC Bioinformatics, 7, 330.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 330
-
-
Kim, S.Y.1
Kim, Y.2
-
16
-
-
33750352462
-
Transcriptional regulatory elements in the human genome
-
Maston,G.A., Evans,S.K. and Green,M.R. (2006) Transcriptional regulatory elements in the human genome. Annu. Rev. Genomics Hum. Genet., 7, 29-59.
-
(2006)
Annu. Rev. Genomics Hum. Genet
, vol.7
, pp. 29-59
-
-
Maston, G.A.1
Evans, S.K.2
Green, M.R.3
-
17
-
-
0032483307
-
Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies
-
van Helden,J., Andre,B. and Collado-Vides,J. (1998) Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies. J. Mol. Biol. 281, 827-842.
-
(1998)
J. Mol. Biol
, vol.281
, pp. 827-842
-
-
van Helden, J.1
Andre, B.2
Collado-Vides, J.3
-
18
-
-
0035775725
-
A new approach to decoding life: Systems biology
-
Ideker,T., Galitski,T. and Hood,L. (2001) A new approach to decoding life: Systems biology. Annu. Rev. Genomics Hum. Genet., 2, 343-372.
-
(2001)
Annu. Rev. Genomics Hum. Genet
, vol.2
, pp. 343-372
-
-
Ideker, T.1
Galitski, T.2
Hood, L.3
-
19
-
-
33746218196
-
Standards for systems biology
-
Brazma,A., Krestyaninova,M. and Sarkans,U. (2006) Standards for systems biology. Nat. Rev. Genet., 7, 593-605.
-
(2006)
Nat. Rev. Genet
, vol.7
, pp. 593-605
-
-
Brazma, A.1
Krestyaninova, M.2
Sarkans, U.3
-
20
-
-
0036493201
-
Nucleotides of transcription factor binding sites exert interdependent effects on the binding affinities of transcription factors
-
Bulyk,M.L., Johnson,P.L.F. and Church,G.M. (2002) Nucleotides of transcription factor binding sites exert interdependent effects on the binding affinities of transcription factors. Nucleic Acids Res., 30, 1255-1261.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 1255-1261
-
-
Bulyk, M.L.1
Johnson, P.L.F.2
Church, G.M.3
-
21
-
-
0742333984
-
A motif co-occurrence approach for genome-wide prediction of transcription-factor-binding sites in Escherichia coli
-
Bulyk,M.L., McGuire,A.M., Masuda,N. and Church,G.M. (2004) A motif co-occurrence approach for genome-wide prediction of transcription-factor-binding sites in Escherichia coli. Genome Res. 14, 201-208.
-
(2004)
Genome Res
, vol.14
, pp. 201-208
-
-
Bulyk, M.L.1
McGuire, A.M.2
Masuda, N.3
Church, G.M.4
-
22
-
-
33847068077
-
-
1st edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
-
Allis,C.D., Jenuwein,T. and Reinberg,D. (2007) Epigenetics, 1st edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
-
(2007)
Epigenetics
-
-
Allis, C.D.1
Jenuwein, T.2
Reinberg, D.3
|