메뉴 건너뛰기




Volumn 36, Issue 10, 2008, Pages 3436-3442

Designating eukaryotic orthology via processed transcription units

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ALTERNATIVE RNA SPLICING; AMINO ACID SEQUENCE; ARTICLE; BIOINFORMATICS; COMPUTER PROGRAM; CONTROLLED STUDY; EUKARYOTE; FUSION GENE; GENE IDENTIFICATION; GENE SEQUENCE; GENETIC TRANSCRIPTION; HUMAN; INTERMETHOD COMPARISON; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; ORTHOLOGY; PRIORITY JOURNAL; SENSITIVITY AND SPECIFICITY; SEQUENCE DATABASE; SYNTENY; ALGORITHM; ANIMAL; CHEMISTRY; EVALUATION; GENETIC DATABASE; GENETICS; GENOMICS; SEQUENCE HOMOLOGY;

EID: 45549101445     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkn227     Document Type: Article
Times cited : (3)

References (23)
  • 1
    • 27644472372 scopus 로고    scopus 로고
    • Orthologs, paralogs, and evolutionary genomics
    • Koonin,E.V. (2005) Orthologs, paralogs, and evolutionary genomics. Annu. Rev. Gen., 39, 309-338.
    • (2005) Annu. Rev. Gen , vol.39 , pp. 309-338
    • Koonin, E.V.1
  • 2
    • 0036889686 scopus 로고    scopus 로고
    • Orthology, paralogy and proposed classification for paralog subtypes
    • Sonnhammer,E.L. and Koonin,E.V. (2002) Orthology, paralogy and proposed classification for paralog subtypes. Trends Genet., 18, 619-620.
    • (2002) Trends Genet , vol.18 , pp. 619-620
    • Sonnhammer, E.L.1    Koonin, E.V.2
  • 3
    • 0034178257 scopus 로고    scopus 로고
    • Homology: A personal view on some of the problems
    • Fitch,W.M. (2000) Homology: A personal view on some of the problems. Trends Genet., 16, 227-231.
    • (2000) Trends Genet , vol.16 , pp. 227-231
    • Fitch, W.M.1
  • 4
    • 0028247213 scopus 로고
    • HOVERGEN: A database of homologous vertebrate genes
    • Duret,L., Mouchiroud,D. and Gouy,M. (1994) HOVERGEN: A database of homologous vertebrate genes. Nucleic Acids Res., 22, 2360-2365.
    • (1994) Nucleic Acids Res , vol.22 , pp. 2360-2365
    • Duret, L.1    Mouchiroud, D.2    Gouy, M.3
  • 7
    • 33846039019 scopus 로고    scopus 로고
    • Hubbard,T.J., Aken,B.L., Beal,K., Ballester,B., Caccamo,M., Chen,Y., Clarke,L., Coates,G., Cunningham,F., Cutts,T. et al. (2007) Ensembl 2007. Nucleic Acids Res., 35, 13610-13617.
    • Hubbard,T.J., Aken,B.L., Beal,K., Ballester,B., Caccamo,M., Chen,Y., Clarke,L., Coates,G., Cunningham,F., Cutts,T. et al. (2007) Ensembl 2007. Nucleic Acids Res., 35, 13610-13617.
  • 8
    • 0035861990 scopus 로고    scopus 로고
    • Automatic clustering of orthologs and in-paralogs from pairwise species comparisons
    • Remm,M., Storm,C.E.V, and Sonnhammer,E.L.L. (2001) Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. J. Mol. Biol., 314, 1041-1052.
    • (2001) J. Mol. Biol , vol.314 , pp. 1041-1052
    • Remm, M.1    Storm, C.E.V.2    Sonnhammer, E.L.L.3
  • 9
    • 13444256478 scopus 로고    scopus 로고
    • Inparanoid: A comprehensive database of eukaryotic orthologs
    • O'Brien,K.P., Remm,M. and Sonnhammer,E.L. (2005) Inparanoid: A comprehensive database of eukaryotic orthologs. Nucleic Acids Res. 33, D476-D480.
    • (2005) Nucleic Acids Res , vol.33
    • O'Brien, K.P.1    Remm, M.2    Sonnhammer, E.L.3
  • 10
    • 0141519279 scopus 로고    scopus 로고
    • OrthoMCL: Identification of ortholog groups for eukaryotic genomes
    • Li,L., Stoeckert,C.J. Jr. and Roos,D.S. (2003) OrthoMCL: Identification of ortholog groups for eukaryotic genomes. Genome Res., 13, 2178-2189.
    • (2003) Genome Res , vol.13 , pp. 2178-2189
    • Li, L.1    Stoeckert Jr., C.J.2    Roos, D.S.3
  • 11
    • 33644787447 scopus 로고    scopus 로고
    • OrthoMCL-DB: Querying a comprehensive multi-species collection of ortholog groups
    • Chen,F., Mackey,A.J., Stoeckert,C.J. Jr. and Roos,D.S. (2006) OrthoMCL-DB: Querying a comprehensive multi-species collection of ortholog groups. Nucleic Acids Res., 34, D363-D368.
    • (2006) Nucleic Acids Res , vol.34
    • Chen, F.1    Mackey, A.J.2    Stoeckert Jr., C.J.3    Roos, D.S.4
  • 14
    • 33846057724 scopus 로고    scopus 로고
    • NCBI reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
    • Pruitt,K.D., Tatusova,T. and Maglott,D.R. (2007) NCBI reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res., 35, D61-D65.
    • (2007) Nucleic Acids Res , vol.35
    • Pruitt, K.D.1    Tatusova, T.2    Maglott, D.R.3
  • 15
    • 0036226603 scopus 로고    scopus 로고
    • BLAT - the BLAST-like alignment tool
    • Kent,W.J. (2002) BLAT - the BLAST-like alignment tool. Genome Res. 12, 656-664.
    • (2002) Genome Res , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 18
    • 0035165586 scopus 로고    scopus 로고
    • SpliceDB: Database of canonical and non-canonical mammalian splice sites
    • Burset,M., Seledtsov,I.A. and Solovyev,V.V. (2001) SpliceDB: Database of canonical and non-canonical mammalian splice sites. Nucleic Acids Res., 29, 255-259.
    • (2001) Nucleic Acids Res , vol.29 , pp. 255-259
    • Burset, M.1    Seledtsov, I.A.2    Solovyev, V.V.3
  • 19
    • 0013936167 scopus 로고
    • Codon - anticodon pairing: The wobble hypothesis
    • Crick,F. (1966) Codon - anticodon pairing: The wobble hypothesis. J. Mol. Biol., 19, 8.
    • (1966) J. Mol. Biol , vol.19 , pp. 8
    • Crick, F.1
  • 21
    • 34548629595 scopus 로고    scopus 로고
    • Transcriptional and epigenetic regulation of the integrin collagen receptor locus ITGA1-PELO-ITGA2
    • Cheli,Y., Kanaji,S., Jacquelin,B., Chang,M., Nugent,D.J. and Kunicki,T.J. (2007) Transcriptional and epigenetic regulation of the integrin collagen receptor locus ITGA1-PELO-ITGA2. Biochim. Biophys. Acta, 1769, 546-558.
    • (2007) Biochim. Biophys. Acta , vol.1769 , pp. 546-558
    • Cheli, Y.1    Kanaji, S.2    Jacquelin, B.3    Chang, M.4    Nugent, D.J.5    Kunicki, T.J.6
  • 22
    • 0034812788 scopus 로고    scopus 로고
    • The paralemmin protein family: Identification of paralemmin-2, an isoform differentially spliced to AKAP2/AKAP-KL, and of palmdelphin, a more distant cytosolic relative
    • Hu,B., Copeland,N.G., Gilbert,D.J., Jenkins,N.A. and Kilimann,M.W. (2001) The paralemmin protein family: Identification of paralemmin-2, an isoform differentially spliced to AKAP2/AKAP-KL, and of palmdelphin, a more distant cytosolic relative. Biochem. Biophys. Res. Commun., 285, 1369-1376.
    • (2001) Biochem. Biophys. Res. Commun , vol.285 , pp. 1369-1376
    • Hu, B.1    Copeland, N.G.2    Gilbert, D.J.3    Jenkins, N.A.4    Kilimann, M.W.5
  • 23
    • 0034306769 scopus 로고    scopus 로고
    • Molecular cloning of ring finger protein 21 (RNF21)/interferon-responsive finger protein (ifp1), which possesses two RING-B box-coiled-coil domains in tandem
    • Orimo,A., Tominaga,N., Yoshimura,K., Yamauchi,Y., Nomura,M., Sato,M., Nogi,Y., Suzuki,M., Suzuki,H., Ikeda,K. et al. (2000) Molecular cloning of ring finger protein 21 (RNF21)/interferon-responsive finger protein (ifp1), which possesses two RING-B box-coiled-coil domains in tandem. Genomics, 69, 143-149.
    • (2000) Genomics , vol.69 , pp. 143-149
    • Orimo, A.1    Tominaga, N.2    Yoshimura, K.3    Yamauchi, Y.4    Nomura, M.5    Sato, M.6    Nogi, Y.7    Suzuki, M.8    Suzuki, H.9    Ikeda, K.10


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.