메뉴 건너뛰기




Volumn 7, Issue 4, 2008, Pages 1458-1469

Proteome profiling of breast tumors by gel electrophoresis and nanoscale electrospray ionization mass spectrometry

Author keywords

Biomarkers; Breast cancer; Mass spectrometry; Nanoelectrospray; SDS electrophoresis

Indexed keywords

PROTEOME; TUMOR MARKER; ACTIN BINDING PROTEIN; CCL1 CHEMOKINE; CCL1 PROTEIN, HUMAN; DNA BINDING PROTEIN; HOMEODOMAIN PROTEIN; LCP1 PROTEIN, HUMAN; MEMBRANE PROTEIN; NANOG PROTEIN, HUMAN; STAT1 PROTEIN; STAT1 PROTEIN, HUMAN; THYMIDINE PHOSPHORYLASE;

EID: 45549096807     PISSN: 15353893     EISSN: None     Source Type: Journal    
DOI: 10.1021/pr7007829     Document Type: Article
Times cited : (54)

References (31)
  • 1
    • 0037435030 scopus 로고    scopus 로고
    • Mass spectrometry-based proteoraics
    • Aebersold, R.; Mann, M. Mass spectrometry-based proteoraics. Nature 2003, 422, 198-207.
    • (2003) Nature , vol.422 , pp. 198-207
    • Aebersold, R.1    Mann, M.2
  • 2
    • 85142174453 scopus 로고    scopus 로고
    • Boyle, E. I.; Weng, S.; Gollub, J.; Jin, H.; Botstein, D.; Cherry, J. M.; Sherlock, G. GO TermFinder-open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. Bioinformatics 2004 2004, 20 (18), 3710-3715.
    • Boyle, E. I.; Weng, S.; Gollub, J.; Jin, H.; Botstein, D.; Cherry, J. M.; Sherlock, G. GO TermFinder-open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. Bioinformatics 2004 2004, 20 (18), 3710-3715.
  • 3
    • 33646570847 scopus 로고    scopus 로고
    • Isoharic tags for relative and absolute quantitation (iTRAQ) reproducibility: Implication of multiple injections
    • Chong, P. K.; Gan, C. S.; Pham, T. K.; Wright, P. C. Isoharic tags for relative and absolute quantitation (iTRAQ) reproducibility: Implication of multiple injections. J. Proteome Res. 2006, 5, 1232-1240.
    • (2006) J. Proteome Res , vol.5 , pp. 1232-1240
    • Chong, P.K.1    Gan, C.S.2    Pham, T.K.3    Wright, P.C.4
  • 4
    • 30844461241 scopus 로고    scopus 로고
    • CPAS: A proteomics data management system for the masses
    • Cottingham, K. CPAS: a proteomics data management system for the masses. J. Proteome Res. 2006, 5, 14.
    • (2006) J. Proteome Res , vol.5 , pp. 14
    • Cottingham, K.1
  • 6
    • 27644473695 scopus 로고    scopus 로고
    • Human embryonic stem cell genes OCT4, NANOG, STELLAR, and GDF3 are expressed in both seminoma and breast carcinoma
    • Ezeh, U. I.; Turek, P. J.; Reijo, R. A.; Amander, T. C. Human embryonic stem cell genes OCT4, NANOG, STELLAR, and GDF3 are expressed in both seminoma and breast carcinoma. Cancer 2005, 104, 2255-2265.
    • (2005) Cancer , vol.104 , pp. 2255-2265
    • Ezeh, U.I.1    Turek, P.J.2    Reijo, R.A.3    Amander, T.C.4
  • 7
    • 33645216368 scopus 로고    scopus 로고
    • The leukocyte protein L-plastin induces proliferation, invasion and loss of E-cadherin expression in colon cancer cells
    • Foran, E.; McWilliam, P.; Kelleher, D.; Croke, D. T.; Long, A. The leukocyte protein L-plastin induces proliferation, invasion and loss of E-cadherin expression in colon cancer cells. Int. J. Cancer 2006, 118, 2098-2104.
    • (2006) Int. J. Cancer , vol.118 , pp. 2098-2104
    • Foran, E.1    McWilliam, P.2    Kelleher, D.3    Croke, D.T.4    Long, A.5
  • 8
    • 0032875697 scopus 로고    scopus 로고
    • Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
    • Gygi, S. P.; Rist, B.; Gerber, S. A.; Turecek, F.; Gelb, M. H.; Aebersold, R. Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nat. Biotechnol. 1999, 17, 994-999.
    • (1999) Nat. Biotechnol , vol.17 , pp. 994-999
    • Gygi, S.P.1    Rist, B.2    Gerber, S.A.3    Turecek, F.4    Gelb, M.H.5    Aebersold, R.6
  • 9
    • 38449084417 scopus 로고    scopus 로고
    • Thymidine phosphorylation expression in breast cancer: The prognostic significance and its association with other angiogenesis related proteins and extracellular matrix componenets
    • Ioachim, E. Thymidine phosphorylation expression in breast cancer: the prognostic significance and its association with other angiogenesis related proteins and extracellular matrix componenets. Histol. Histopathol. 2008, 23, 187-196.
    • (2008) Histol. Histopathol , vol.23 , pp. 187-196
    • Ioachim, E.1
  • 11
    • 33746930864 scopus 로고    scopus 로고
    • A uniform proteomics MS/MS analysis platform utilizing open XML file formats
    • Keller, A.; Eng, J.; Zhang, N.; Li, X. J.; Aebersold, R. A uniform proteomics MS/MS analysis platform utilizing open XML file formats. Mol. Syst. Biol. 2005, 1, 0017.
    • (2005) Mol. Syst. Biol , vol.1 , pp. 0017
    • Keller, A.1    Eng, J.2    Zhang, N.3    Li, X.J.4    Aebersold, R.5
  • 12
    • 0014949207 scopus 로고
    • Cleavage of structural proteins during the assembly of the head of bacteriophage T4
    • Laemmli, U. K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 1970, 227, 680-685.
    • (1970) Nature , vol.227 , pp. 680-685
    • Laemmli, U.K.1
  • 14
    • 0033965092 scopus 로고    scopus 로고
    • Upregulation of L-plastin gene by testosterone in breast and prostate cancer cells: Identification of three cooperative androgen receptor-binding sequences
    • Lin. C. S.; Lau, A.; Yeh, C. C.; Chang, C. H.; Lue, T. F. Upregulation of L-plastin gene by testosterone in breast and prostate cancer cells: identification of three cooperative androgen receptor-binding sequences. DNA Cell. Biol. 2000, 19, 1-7.
    • (2000) DNA Cell. Biol , vol.19 , pp. 1-7
    • Lin, C.S.1    Lau, A.2    Yeh, C.C.3    Chang, C.H.4    Lue, T.F.5
  • 15
    • 3242731195 scopus 로고    scopus 로고
    • A model for random sampling and estimation of relative protein abundance in shotgun proteomics
    • Liu, H.; Sadygov, R. G.; Yates, J. R., III. A model for random sampling and estimation of relative protein abundance in shotgun proteomics. Anal. Chem. 2004, 76, 4193-4201.
    • (2004) Anal. Chem , vol.76 , pp. 4193-4201
    • Liu, H.1    Sadygov, R.G.2    Yates III, J.R.3
  • 16
    • 33750979860 scopus 로고    scopus 로고
    • General framework for developing and evaluating database scoring algorithms using the TANDEM search engine
    • Maclean, B.; Eng, J. K.; Beavis, R. C.; Mcintosh, M. General framework for developing and evaluating database scoring algorithms using the TANDEM search engine. Bioinformatics 2006, 22 (22), 2830-2832.
    • (2006) Bioinformatics , vol.22 , Issue.22 , pp. 2830-2832
    • Maclean, B.1    Eng, J.K.2    Beavis, R.C.3    Mcintosh, M.4
  • 18
    • 2442471739 scopus 로고    scopus 로고
    • Differential phos-phoproteome profiling by affinity capture and tandem matrix-assisted laser desorption/ionization mass spectrometry
    • Metodiev, M. V.; Timanova, A.; Stone, D. E. Differential phos-phoproteome profiling by affinity capture and tandem matrix-assisted laser desorption/ionization mass spectrometry. Proteomics 2004, 4, 1433-1438.
    • (2004) Proteomics , vol.4 , pp. 1433-1438
    • Metodiev, M.V.1    Timanova, A.2    Stone, D.E.3
  • 19
    • 27644543078 scopus 로고    scopus 로고
    • old, W. M.; Meyer-Arendt, K.; Aveline-Wolf, L.; Pierce, K. G.; Mendoza, A.; Sevinsky, J. R.; Resing, K. A.; Ahn, N. G. Comparison of label-free methods for quantifying human proteins by shotgun proteomics. Mol. Cell. Proteomics 2005, 4, 1487-1502.
    • old, W. M.; Meyer-Arendt, K.; Aveline-Wolf, L.; Pierce, K. G.; Mendoza, A.; Sevinsky, J. R.; Resing, K. A.; Ahn, N. G. Comparison of label-free methods for quantifying human proteins by shotgun proteomics. Mol. Cell. Proteomics 2005, 4, 1487-1502.
  • 20
    • 0037370373 scopus 로고    scopus 로고
    • Proteomics: The first decade and beyond
    • Patterson, S. D.; Aebersold, R. H. Proteomics: the first decade and beyond. Nat. Genet. 2003, 33 (Suppl.), 311-323.
    • (2003) Nat. Genet , vol.33 , Issue.SUPPL. , pp. 311-323
    • Patterson, S.D.1    Aebersold, R.H.2
  • 23
    • 13244260803 scopus 로고    scopus 로고
    • A novel strategy for quantitative proteomics using isotope-coded protein labels
    • Schmidt, A.; Kellermann, J.; Lottspeich, F. A novel strategy for quantitative proteomics using isotope-coded protein labels. Proteomics 2005, 5, 4-15.
    • (2005) Proteomics , vol.5 , pp. 4-15
    • Schmidt, A.1    Kellermann, J.2    Lottspeich, F.3
  • 25
    • 33645150800 scopus 로고    scopus 로고
    • Knowledge discovery in high-dimensional data: Case studies and a user survey for the rank-by-feature framework
    • Seo, J.; Shneiderman, B. Knowledge discovery in high-dimensional data: case studies and a user survey for the rank-by-feature framework. IEEE Trans. Vis. Comput. Graph. 2006, 12, 311-322.
    • (2006) IEEE Trans. Vis. Comput. Graph , vol.12 , pp. 311-322
    • Seo, J.1    Shneiderman, B.2
  • 26
    • 34547742663 scopus 로고    scopus 로고
    • Signal transducer and activator of transcription lin breast cancer: Analysis with tissue microarray
    • Sheen-Cheen, S. M.; Huang, C. C.; Tang, R. P.; Yang, C. H.; Chou, F. F.; Eng, H. L. Signal transducer and activator of transcription lin breast cancer: analysis with tissue microarray. Anticancer 2007, 27, 2481-2486.
    • (2007) Anticancer , vol.27 , pp. 2481-2486
    • Sheen-Cheen, S.M.1    Huang, C.C.2    Tang, R.P.3    Yang, C.H.4    Chou, F.F.5    Eng, H.L.6
  • 27
    • 33745581682 scopus 로고    scopus 로고
    • Nanog promotes transfer of pluripotency after cell fusion
    • Silva, J.; Chambers, I.; Pollard, S.; Smith, A. Nanog promotes transfer of pluripotency after cell fusion. Nature 2006, 441, 997- 1001.
    • (2006) Nature , vol.441 , pp. 997-1001
    • Silva, J.1    Chambers, I.2    Pollard, S.3    Smith, A.4
  • 28
    • 0030749214 scopus 로고    scopus 로고
    • Taylor, M. R.; Couto, J. R.; Scallan, C. D.; Ceriani, R. L; Peterson, J. A. Lactadherin (formerly BA46), a membrane-associated glycoprotein expressed in human milk and breast carcinomas, promotes Arg-GIy-Asp (RGD)-dependent cell adhesion. DNA Cell. Biol. 1997, 16, 861-869.
    • Taylor, M. R.; Couto, J. R.; Scallan, C. D.; Ceriani, R. L; Peterson, J. A. Lactadherin (formerly BA46), a membrane-associated glycoprotein expressed in human milk and breast carcinomas, promotes Arg-GIy-Asp (RGD)-dependent cell adhesion. DNA Cell. Biol. 1997, 16, 861-869.
  • 29
    • 0032933732 scopus 로고    scopus 로고
    • Significance of thymidine phosphorylase as a marker of protumor monocytes in breast cancer
    • Toi, M.; Ueno, T.; Matsumoto, H.; Saji, H.; Funata, N.; Koike, M.; Tominaga, T. Significance of thymidine phosphorylase as a marker of protumor monocytes in breast cancer. Clin. Cancer Res. 1999, 5, 1131-1137.
    • (1999) Clin. Cancer Res , vol.5 , pp. 1131-1137
    • Toi, M.1    Ueno, T.2    Matsumoto, H.3    Saji, H.4    Funata, N.5    Koike, M.6    Tominaga, T.7
  • 30
    • 0035582244 scopus 로고    scopus 로고
    • An automated multidimensional protein identification technology for shotgun proteomics
    • Wolters, D. A.; Washburn, M. P.; Yates, J. R., III. An automated multidimensional protein identification technology for shotgun proteomics. Anal. Chem. 2001, 73, 5683-5690.
    • (2001) Anal. Chem , vol.73 , pp. 5683-5690
    • Wolters, D.A.1    Washburn, M.P.2    Yates III, J.R.3
  • 31
    • 33646872074 scopus 로고    scopus 로고
    • NANOGP8 is a retrogene expressed in cancers
    • Zhang, J.; Wang, X.; Li, M.; Han, J.; Chen, B.; Wang, B.; Dai, J. NANOGP8 is a retrogene expressed in cancers. FEBS 2006, 273, 1723-1730.
    • (2006) FEBS , vol.273 , pp. 1723-1730
    • Zhang, J.1    Wang, X.2    Li, M.3    Han, J.4    Chen, B.5    Wang, B.6    Dai, J.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.