Terminal proteins of Streptomyces chromosome can target DNA into eukaryotic nuclei

Nucleic Acids Research

Volumn 36, Issue 10, 2008, Pages

  Tsai, Hsiu Hui ^a   Huang, Chih Hung ^b   Lin, Alan M ^a   Chen, Carton W ^a  

^a NATIONAL YANG MING UNIVERSITY   (Taiwan)

^b NATIONAL TAIPEI UNIVERSITY OF TECHNOLOGY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; PLASMID DNA; TERMINAL PROTEIN; BACTERIAL DNA; DNA BINDING PROTEIN; HYBRID PROTEIN;

ARTICLE; BACTERIAL CHROMOSOME; CELL NUCLEUS; CONTROLLED STUDY; COVALENT BOND; EUKARYOTE; EUKARYOTIC CELL; GENE TRANSFER; HUMAN; HUMAN CELL; NONHUMAN; NUCLEAR LOCALIZATION SIGNAL; NUCLEOTIDE SEQUENCE; PLANT CELL; PRIORITY JOURNAL; PROTEIN FUNCTION; PROTEIN TARGETING; REPLICON; RHIZOBIUM RADIOBACTER; SOIL MICROFLORA; STREPTOMYCES; ACTIVE TRANSPORT; CELL LINE; CHEMISTRY; DNA REPLICATION; GENETICS; METABOLISM; PLASMID;

AGROBACTERIUM TUMEFACIENS; EUKARYOTA; STREPTOMYCES;

ACTIVE TRANSPORT, CELL NUCLEUS; BACTERIAL PROTEINS; CELL LINE; CELL NUCLEUS; CHROMOSOMES, BACTERIAL; DNA REPLICATION; DNA, BACTERIAL; DNA-BINDING PROTEINS; HUMANS; NUCLEAR LOCALIZATION SIGNALS; PLASMIDS; RECOMBINANT FUSION PROTEINS; STREPTOMYCES;

EID: 45549092143     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkm1170     Document Type: Article

References (41)

1. Chen,C.W. (1996) Complications and implications of linear bacterial chromosomes. Trends Genet., 12, 192-196.
2. Chang,P.C. and Cohen,S.N. (1994) Bidirectional replication from an internal origin in a linear Streptomyces plasmid. Science, 265, 952-954.
3. Bao,K. and Cohen,S.N. (2001) Terminal proteins essential for the replication of linear plasmids and chromosomes in Streptomyces. Genes Dev., 15, 1518-1527.
4. Yang,C.-C., Huang,C.-H., Li,C.-Y., Tsay,Y.-G., Lee,S.-C. and Chen,C.W. (2002) The terminal proteins of linear Streptomyces chromosomes and plasmids: A novel class of replication priming proteins. Mol. Microbiol., 43, 297-305.
5. Bao,K. and Cohen,S.N. (2003) Recruitment of terminal protein to the ends of Streptomyces linear plasmids and chromosomes by a novel telomere-binding protein essential for linear DNA replication. Genes Dev., 17, 774-785.
6. Yang,C.C., Chen,Y.H., Tsai,H.H., Huang,C.H., Huang,T.W. and Chen,C.W. (2006) In vitro deoxynucleotidylation of the terminal protein of Streptomyces linear chromosomes. Appl. Environ. Microbiol., 72, 7959-7961.
7. Hodel,M.R., Corbett,A.H. and Hodel,A.E. (2001) Dissection of a nuclear localization signal. J. Biol. Chem., 276, 1317-1325.
8. LaCasse,E.C. and Lefebvre,Y.A. (1995) Nuclear localization signals overlap DNA- or RNA-binding domains in nucleic acid-binding proteins. Nucleic Acids Res., 23, 1647-1656.
9. Cokol,M., Nair,R. and Rost,B. (2000) Findihg nuclear localization signals. EMBO Rep, 1, 411-415.
10. Huang,C.-H., Tsai,H.-H., Tsay,Y.-G., Chien,Y.-N., Wang,S.-L., Cheng,M.-Y., Ke,C.-H. and Chen,C.W. (2007) The telomere system of the Streptomyces linear plasmid SCP1 represents a novel class. Mol. Microbiol., 63, 1710-1118.
11. Kieser,T., Bibb,M., Buttner,M.J., Chater,K.F. and Hopwood,D.A. (2000) Practical Streptomyces Genetics. The John Innes Foundation, Norwich.
12. Sambrook,J., MacCallum,P. and Russel,D. (2001) Molecular Cloning. 3rd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
13. Hopwood,D.A., Kieser,T., Wright,H.M. and Bibb,M.J. (1983) Plasmids, recombination, and chromosomal mapping in Streptomyces lividans 66. J. Gen. Microbiol., 129, 2257-2269.
14. Redenbach,M., Flett,F., Piendl,W., Glocker,I., Rauland,U., Wafzig,O., Leblond,P. and Cullum,J. (1993) The Streptomyces lividans 66 chromosome contains a 1 Mb deletogenic region flanked by two amplifiable regions. Mol. Gen. Genet., 241, 255-262.
15. Fujii,T., Tamura,K., Copeland,N.G., Gilbert,D.J., Jenkins,N.A., Yomogida,K., Tanaka,H., Nishimune,Y., Nojima,H. and Abiko,Y. (1999) Sperizin is a murine RING zinc-finger protein specifically expressed in haploid germ cells. Genomics, 57, 94-101.
16. Qin,Z. and Cohen,S.N. (1998) Replication at the telomeres of the Streptomyces linear plasmid pSLA2. Mol. Microbiol., 28, 893-904.
17. Mochizuki,S., Hiratsu,K., Suwa,M., Ishii,T., Sugino,F., Yamada,K. and Kinashi,H. (2003) The large linear plasmid pSLA2-L of Streptomyces rochei has an unusually condensed gene organization for secondary metabolism. Mol. Microbiol., 48, 1501-1510.
18. Cunningham,B.C. and Wells,J.A. (1989) High-resolution epitope mapping of hGH-receptor interactions by alanine-scanning mutagenesis. Science 244, 1081-1085.
19. Chang,P.C., Kim,E.S. and Cohen,S.N. (1996) Sireptomyces linear plasmids that contain a phage-like, centrally located, replication origin. Mol. Microbiol., 22, 789-800.
20. Shiffman,D. and Cohen,S.N. (1992) Reconstruction of a Streptomyces linear plasmid replicon from separately cloned DNA fragment: Existence of a cryptic origin of circular replication within the linear plasmid. Proc. Natl Acad. Sci. USA, 89, 6129-6133.
21. Tinland,B., Koukolikova-Nicola,Z., Hall,M.N. and Hohn,B. (1992) The T-DNA-linked Vird2 protein contains two distinct functional nucfear localization signals. PNAS, 89, 7442-7446.
22. Vogel,A.M. and Das,A. (1992) Mutational analysis of Agrobacterium tumefaciens virD2: Tyrosine 29 is essential for endonuclease activity. J. Bacteriol., 174, 303-308.
23. Kelly,B.A. and Kado,C.I. (2002) Agrobacterium-mediated T-DNA transfer and integration into the chromosome of Streptomyces lividans. Mole. Plant Pathol., 3, 125-134.
24. Huang,C.H., Chen,C.Y., Tsai,H.H., Chen,C., Lin,Y.S. and Chen,C.W. (2003) Linear plasmid SLP2 of Streptomyces lividans is a composite replicon. Mol. Microbiol., 47, 1563-1576.
25. Brown,J.R. (2003) Ancient horizontal gene transfer. Nat. Rev. Gen. 4, 121-132.
26. Broothaerts,W., Mitchell,H.J., Weir,B., Kaines,S., Smith,L.M.A., Yang,W., Mayer,J.E., Roa-Rodriguez,C. and Jefferson,R.A. (2005) Gene transfer to plants by diverse species of bacteria. Nature, 433 629-633.
27. Gelvin,S.B. (2003) Agrobacterium-mediated plant transformation: the biology behind the "gene-jockeying" tool. Microbiol. Mol. Biol. Rev., 67, 16-37.
28. Kunik,T., Tzfira,T., Kapulnik,Y., Gafni,Y., Dingwall,C. and Citovsky,V. (2001) Genetic transformation of HeLa cells by Agrobacterium. PNAS 98, 1871-1876.
29. Yoon,Y.G. and Koob,M.D. (2005) Transformation of isolated mammalian mitochondria by bacterial conjugation. Nucleic Acids Res., 33 e139.
30. Munkonge,F.M., Dean,D.A., Hillery,E., Griesenbach,U. and Alton,E.W. (2003) Emerging significance of plasmid DNA nuclear import in gene therapy. Adv. Drug Deliv. Rev., 55, 749-760.
31. van der Aa,M.A., Mastrobattista,E., Oosting,R.S., Hennink,W.E., Koning,G.A. and Crommelin,D.J. (2006) The nuclear pore complex: The gateway to successful nonviral gene delivery. Pharmaceut. Res., 23, 447-459.
32. Cartier,R. and Reszka,R. (2002) Utilization of synthetic peptides containing nuclear localization signals for nonviral gene transfer systems. Gene Ther., 9, 157-167.
33. Zanta,M.A., Belguise-Valladier,P. and Behr,J.P. (1999) Gene delivery: A single nuclear localization signal peptide is sufficient to carry DNA to the cell nucleus. Proc. Natl Acad. Sci. USA, 96, 91-96.
34. Van der Aa,M.A., Koning,G.A., d'Oliveira,C., Oosting,R.S., Wilschut,K.J., Hennink,W.E. and Crommelin,D.J. (2005) An NLS peptide covalently linked to linear DNA does not enhance transfection efficiency of cationic polymer based gene delivery systems. J. Gene Med., 7, 208-217.
35. Tanimoto,M., Kamiya,H., Minakawa,N., Matsuda,A. and Harashima,H. (2003) No enhancement of nuclear entry by direct conjugation of a nuclear localization signal peptide to linearized DNA. Bioconjugate Chem., 14, 1197-1202.
36. Lechardeur,D., Sohn,K.J., Haardt,M., Joshi,P.B., Monck,M., Graham,R.W. Beatty,B. Squire,J. O'Brodovich.H. and Lukacs,G.L. (1999) Metabolic instability of plasmid DNA in the cytosol: A potential barrier to gene transfer. Gene Ther., 6, 482-497.
37. Tolmachov,O. and Coutelle,C. (2007) Covalent attachment of multifunctional chimeric terminal proteins to 5′ DNA ends: A potential new strategy for assembly of synthetic therapeutic gene vectors. Med. Hypothes., 68, 328-331.
38. Ikeda,H., Ishikawa,J., Hanamoto,A., Shinose,M., Kikuchi,H., Shiba,T., Sakaki,Y., Hattori,M. and Omura,S. (2003) Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis. Nat Biotechnol., 21, 526-531.
39. Hosted,T.J., Wang,T. and Horan,A.C. (2004) Characterization of the Streptomyces lavendulae IMRU 3455 linear plasmid pSLV45. Microbiol., 150, 1819-1827.
40. Zhang,R., Yang,Y., Fang,P., JiangC., Xu,L., Zhu,Y., Shen,M., Xia,H., Zhao,J., Chen,T. et al. (2006) Diversity of telomere palindromic sequences and replication genes among Streptomyces linear plasmids. Appl. Environ. Microbiol., 72, 5728-5733.
41. Kinashi,H., Fujii,S., Hatani,A., Kurokawa,T. and Shinkawa,H. (1998) Physical mapping of the linear plasmid pSLA2-L and localization of the eryAI and astI homologs. Biosci. Biotechnol. Biochem., 62, 1892-1897.