CSCDB: The cAMP and cGMP signaling components database

Genomics

Volumn 92, Issue 1, 2008, Pages 60-64

  Lu, Jianxin ^a   Bao, Qiyu ^a   Wu, Jinyu ^a   Wang, Huan ^a   Li, Dong ^a   Xi, Yali ^a   Wang, Shengqin ^a   Yu, Shuaishuai ^a   Qu, Jia ^a  

^a WENZHOU MEDICAL UNIVERSITY   (China)

Author keywords

Adenylate cyclase; CSCDB database; Cyclic nucleotide phosphodiesterase; Cyclic nucleotide binding protein; Guanylate cyclase

Indexed keywords

ACYLTRANSFERASE; ADENYLATE CYCLASE; BINDING PROTEIN; CYCLIC AMP; CYCLIC GMP; CYCLIC NUCLEOTIDE BINDING PROTEIN; CYCLIC NUCLEOTIDE PHOSPHODIESTERASE; DIGUANYLATE CYCLASE; FERREDOXIN; GLUTAMINASE; GUANYLATE CYCLASE; OXIDOREDUCTASE; PYRIDINE NUCLEOTIDE DISULFIDE OXIDOREDUCTASE; SYNTHETASE; THIOREDOXIN REDUCTASE; THIOSULFATE SULFURTRANSFERASE;

AMINO ACID SEQUENCE; ARCHAEBACTERIUM; ARTICLE; BACTERIUM; BINDING SITE; CHROMOSOME; CSCDB DATA BASE; DATA BASE; ENZYME ACTIVITY; EUKARYOTE; GENE SEQUENCE; GENOME; INFORMATION RETRIEVAL; INFORMATION SERVICE; INTERNET; NONHUMAN; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN DOMAIN; PROTEIN FUNCTION; SECOND MESSENGER; SEQUENCE HOMOLOGY; SIGNAL TRANSDUCTION; STRUCTURE ANALYSIS;

ANIMALS; ARCHAEA; BACTERIA; CYCLIC AMP; CYCLIC GMP; DATABASES, PROTEIN; ENZYMES; INTERNET; PROTEIN STRUCTURE, TERTIARY; SIGNAL TRANSDUCTION; SOFTWARE;

EUKARYOTA;

EID: 45449091921     PISSN: 08887543     EISSN: 10898646     Source Type: Journal    
DOI: 10.1016/j.ygeno.2008.03.012     Document Type: Article

References (26)

1. Linder J.U. Class III adenylyl cyclases: molecular mechanisms of catalysis and regulation. Cell Mol. Life Sci. 63 (2006) 1736-1751
2. Linder J.U., and Schultz J.E. The class III adenylyl cyclases: multi-purpose signalling modules. Cell Signal. 15 (2003) 1081-1089
3. Baker D.A., and Kelly J.M. Structure, function and evolution of microbial adenylyl and guanylyl cyclases. Mol. Microbiol. 52 (2004) 1229-1242
4. Pannbacker R.G. Cyclic nucleotide metabolism in human photoreceptors. Invest. Ophthalmol. 13 (1974) 535-538
5. Brown C.T., and Callan Jr. C.G. Evolutionary comparisons suggest many novel cAMP response protein binding sites in Escherichia coli. Proc. Natl. Acad. Sci. U. S. A. 101 (2004) 2404-2409
6. Ochoa De Alda J.A., Ajlani G., and Houmard J. Synechocystis strain PCC 6803 cya2, a prokaryotic gene that encodes a guanylyl cyclase. J. Bacteriol. 182 (2000) 3839-3842
7. Sismeiro O., Trotot P., Biville F., Vivares C., and Danchin A. Aeromonas hydrophila adenylyl cyclase 2: a new class of adenylyl cyclases with thermophilic properties and sequence similarities to proteins from hyperthermophilic archaebacteria. J. Bacteriol. 180 (1998) 3339-3344
8. Cotta M.A., Whitehead T.R., and Wheeler M.B. Identification of a novel adenylate cyclase in the ruminal anaerobe, Prevotella ruminicola D31d. FEMS Microbiol. Lett. 164 (1998) 257-260
9. Tellez-Sosa J., Soberon N., Vega-Segura A., Torres-Marquez M.E., and Cevallos M.A. The Rhizobium etli cyaC product: characterization of a novel adenylate cyclase class. J. Bacteriol. 184 (2002) 3560-3568
10. Bosgraaf L., Russcher H., Snippe H., Bader S., Wind J., and Van Haastert P.J. Identification and characterization of two unusual cGMP-stimulated phoshodiesterases in dictyostelium. Mol. Biol. Cell 13 (2002) 3878-3889
11. Richter W. 3′,5′ Cyclic nucleotide phosphodiesterases class III: members, structure, and catalytic mechanism. Proteins 46 (2002) 278-286
12. Francis S.H., and Corbin J.D. Structure and function of cyclic nucleotide-dependent protein kinases. Annu. Rev. Physiol. 56 (1994) 237-272
13. Capener C.E., Kim H.J., Arinaminpathy Y., and Sansom M.S. Ion channels: structural bioinformatics and modelling. Hum. Mol. Genet. 11 (2002) 2425-2433
14. Schmidt A., and Hall A. Guanine nucleotide exchange factors for Rho GTPases: turning on the switch. Genes Dev. 16 (2002) 1587-1609
15. Botsford J.L., and Harman J.G. Cyclic AMP in prokaryotes. Microbiol. Rev. 56 (1992) 100-122
16. McCue L.A., McDonough K.A., and Lawrence C.E. Functional classification of cNMP-binding proteins and nucleotide cyclases with implications for novel regulatory pathways in Mycobacterium tuberculosis. Genome Res. 10 (2000) 204-219
17. Iyer L.M., and Aravind L. The catalytic domains of thiamine triphosphatase and CyaB-like adenylyl cyclase define a novel superfamily of domains that bind organic phosphates. BMC Genomics 3 (2002) 33
18. Aravind L., and Koonin E.V. The HD domain defines a new superfamily of metal-dependent phosphohydrolases. Trends Biochem Sci. 23 (1998) 469-472
19. Studholme D.J., and Dixon R. Domain architectures of sigma54-dependent transcriptional activators. J. Bacteriol. 185 (2003) 1757-1767
20. Ryjenkov D.A., Tarutina M., Moskvin O.V., and Gomelsky M. Cyclic diguanylate is a ubiquitous signaling molecule in bacteria: insights into biochemistry of the GGDEF protein domain. J. Bacteriol. 187 (2005) 1792-1798
21. Zhao F., Zhang X., Liang C., Wu J., Bao Q., and Qin S. Genome-wide analysis of restriction-modification system in unicellular and filamentous cyanobacteria. Physiol. Genomics 24 (2006) 181-190
22. Finn R.D., Mistry J., Schuster-Bockler B., Griffiths-Jones S., Hollich V., Lassmann T., Moxon S., Marshall M., Khanna A., Durbin R., Eddy S.R., Sonnhammer E.L., and Bateman A. Pfam: clans, web tools and services. Nucleic Acids Res. 34 (2006) D247-D251
23. Eddy S.R. Profile hidden Markov models. Bioinformatics 14 (1998) 755-763
24. Olson S.A. EMBOSS opens up sequence analysis. European Molecular Biology Open Software Suite. Brief Bioinform. 3 (2002) 87-91
25. Sonnhammer E.L., von Heijne G., and Krogh A. A hidden Markov model for predicting transmembrane helices in protein sequences. Proc. Int. Conf. Intell. Syst. Mol. Biol. 6 (1998) 175-182
26. Wu J., Wang S., Bai J., Shi L., Li D., Xu Z., Niu Y., Lu J., and Bao Q. ArchaeaTF: an integrated database of putative transcription factors in Archaea. Genomics 91 (2008) 102-107