Geographically and temporally distant natural recombinant isolates of Plum pox virus (PPV) are genetically very similar and form a unique PPV subgroup

Journal of General Virology

Volumn 85, Issue 9, 2004, Pages 2671-2681

  Glasa, Miroslav ^a   Palkovics, Laszlo ^b   Komínek, Petr ^c   Labonne, Gérard ^d   Pittnerová, Soňa ^a   Kúdela, Otakar ^a   Candresse, Thierry ^e   Šubr, Zdeno ^a  

^a INSTITUTE OF VIROLOGY   (Slovakia)

^b SZENT ISTVÁN UNIVERSITY   (Hungary)

^c CROP RESEARCH INSTITUTE   (Czech Republic)

^d Campus International de Baillarguet   (France)

^e UNIVERSITÉ DE BORDEAUX   (France)

Author keywords

[No Author keywords available]

Indexed keywords

CAPSID PROTEIN; COAT PROTEIN; GENOMIC RNA; ISOLEUCINE; THREONINE;

ALBANIA; AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; AMINO TERMINAL SEQUENCE; APHID; ARTICLE; BIOASSAY; BULGARIA; CONTROLLED STUDY; CZECH REPUBLIC; GENE LOCATION; GENE MUTATION; GENE SEQUENCE; GENETIC CONSERVATION; GENETIC SIMILARITY; GEOGRAPHICAL VARIATION (SPECIES); GERMANY; HUNGARY; MOSAIC VIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PLANT PATHOGEN INTERACTION; PRIORITY JOURNAL; PROTEIN MOTIF; PRUNUS; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SLOVAKIA; VIRAL GENETICS; VIRUS DETECTION; VIRUS ISOLATION; VIRUS MORPHOGENESIS; VIRUS RECOMBINANT; VIRUS TRANSMISSION; VIRUS TYPING;

ANIMALS; APHIDS; CAPSID PROTEINS; EUROPE; GENES, VIRAL; GENOME, VIRAL; INSECT VECTORS; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT DISEASES; PLANT LEAVES; PLUM POX VIRUS; PRUNUS; RECOMBINATION, GENETIC; SEQUENCE HOMOLOGY; TOBACCO; VIRULENCE;

APHIDIDAE; PLUM POX VIRUS; PRUNUS; PRUNUS DOMESTICA;

EID: 4544383420     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/vir.0.80206-0     Document Type: Article

References (45)

1. Aaziz, R. & Tepfer, M. (1999). Recombination in RNA viruses and in virus-resistant transgenic plants. J Gen Virol 80, 1339-1346.
2. Atreya, P. L., Lopez-Maya, J. J., Chu, M., Atreya, C. D. & Pirone, T. P. (1995). Mutational analysis of the coat protein N-terminal amino acids involved in potyvirus transmission by aphids. J Gen Virol 76, 265-270.
3. Blanc, S., Lopez-Maya, J. J., Wang, R., Garcia-Lampasona, S., Thornbury, D. W. & Pirone, T. P. (1997). A specific interaction between coat protein and helper component correlates with aphid transmission of a potyvirus. Virology 231, 141-147.
4. Bousalem, M., Candresse, T., Quiot-Douine, L. & Quiot, J. B. (1994). Comparison of three methods for assessing plum pox virus variability: further evidence for the existence of two major groups of isolates. J Phytopathol 142, 163-172.
5. Bousalem, M., Douzery, E. J. & Fargette, D. (2000). High genetic diversity, distant phylogenetic relationships and intraspecies recombination events among natural populations of Yam mosaic virus: a contribution to understanding potyvirus evolution. J Gen Virol 81, 243-255.
6. Bousalem, M., Dallot, S., Fuji, S. & Natsuaki, K. T. (2003). Origin, world-wide dispersion, bio-geographical diversification, radiation and recombination: an evolutionary history of Yam mild mosaic virus (YMMV). Infect Genet Evol 3, 189-206.
7. Candresse, T., Cambra, M., Dallot, S. & 9 other authors (1998). Comparison of monoclonal antibodies and polymerase chain reaction assays for the typing of isolates belonging to the M and D serotypes of plum pox potyvirus. Phytopathology 88, 198-204.
8. Cervera, M. T., Riechmann, J. L., Martin, M. T. & Garcia, J. A. (1993). 3′ terminal sequence of the plum pox virus PS and o6 isolates: evidence for RNA recombination within the potyvirus group. J Gen Virol 74, 329-334.
9. Desbiez, C. & Lecoq, H. (2004). The nucleotide sequence of Watermelon mosaic virus (WMV, Potyvirus) reveals interspecific recombination between two related potyviruses in the 5′ part of the genome. Arch Virol 149 (in press).
10. Devereux, J., Haeberli, P. & Smithies, O. (1984). A comprehensive set of sequence analysis program for the VAX. Nucleic Acids Res 12, 387-395.
11. Dietrich, C. & Maiss, E. (2003). Fluorescent labelling reveals spatial separation of potyvirus populations in mixed infected Nicotiana benthamiana plants. J Gen Virol 84, 2871-2876.
12. Garcia-Arenal, F., Fraile, A. & Malpica, J. M. (2001). Variability and genetic structure of plant virus populations. Annu Rev Phytopathol 39, 157-186.
13. Garcia-Arenal, F., Fraile, A. & Malpica, J. M. (2003). Variation and evolution of plant virus populations. Int Microbiol 6, 225-232.
14. N isolates. Arch Virol 147, 363-378.
15. Glasa, M., Kúdela, O., Marie-Jeanne, V. & Quiot, J. B. (2001). Evidence of a naturally occurring recombinant isolate of Plum pox virus from Slovakia. Plant Dis 85, 920.
16. Glasa, M., Marie-Jeanne, V., Moury, B., Kúdela, O. & Quiot, J. B. (2002a). Molecular variability of the P3-6K1 genomic region among geographically and biologically distinct isolates of Plum pox virus. Arch Virol 147, 563-575.
17. Glasa, M., Marie-Jeanne, V., Labonne, G., Šubr, Z., Kúdela, O. & Quiot, J. B. (2002b). Natural population of recombinant Plum pox virus is stable and competitive under field conditions. Eur J Plant Pathol 108, 843-853.
18. James, D., Varga, A., Thompson, D. & Hayes, S. (2003). Detection of a new and unusual isolate of plum pox potyvirus in plum (Prunus domestica). Plant Dis 87, 1119-1124.
19. Klein, P. G., Klein, R. R., Rodriguez-Cerezo, E., Hunt, A. G. & Shaw, J. G. (1994). Mutational analysis of the tobacco vein mottling virus genome. Virology 204, 759-769.
20. Krause-Sakate, R., Fakhfakh, H., Peypelut, M., Pavan, M. A., Zerbini, F. M., Marrakchi, M., Candresse, T. & Le Gall, O. (2004). A naturally occurring recombinant isolate of Lettuce mosaic virus. Arch Virol 149, 191-197.
21. Kumar, S., Tamura, K., Ingrid, B. J. & Nei, M. (2001). MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17, 1244-1245.
22. Labonne, G., Yvon, M., Quiot, J. B., Avinent, L. & Llacer, G. (1995). Aphids as potential vectors of plum pox virus: comparison of methods of testing and epidemiological consequences. Acta Hortic 386, 207-216.
23. Lai, M. M. C. (1992). RNA recombination in animal and plant viruses. Microbiol Rev 56, 61-79.
24. Lai, M. M. C. (1995). Recombination and its evolutionary effect on viruses with RNA genomes. In Molecular Basis of Virus Evolution, pp. 119-132. Edited by A. J. Gibbs, C. H. Calisher & F. Garcia-Arenal. Cambridge: Cambridge University Press.
25. Moreno, I. M., Malpica, J. M., Diaz-Pendon, J. A., Moriones, E., Fraile, A. & Garcia-Arenal, F. (2004). Variability and genetic structure of the population of watermelon mosaic virus infecting melon in Spain. Virology 318, 451-460.
26. Myrta, A., Di Terlizzi, B., Boscia, D., Caglayan, K., Gavriel, I., Ghanem, G., Varveri, C. & Savino, V. (1998). Detection and serotyping of Mediterranean plum pox virus isolates by means of strain-specific monoclonal antibodies. Acta Virol 42, 251-253.
27. Nagy, P. D. & Simon, A. E. (1997). New insights into the mechanisms of RNA recombination. Virology 235, 1-9.
28. Nemchinov, L., Crescenzi, A., Hadidi, A., Piazzolla, P. & Verderevskaya, T. (1998). Present status of the new cherry subgroup of Plum pox virus (PPV-C). In Plant Virus Disease Control, pp. 629-638. Edited by A. Hadidi, R. K. Khetarpal & H. Koganezawa. St Paul, MN: American Phytopathological Society.
29. Palkovics, L., Burgyan, J. & Balazs, E. (1993). Comparative sequence analysis of four complete primary structure of plum pox virus strains. Virus Genes 7, 339-347.
30. Peng, Y., Kadoury, D., Gal-On, A., Huet, H., Wang, Y. & Raccah, B. (1998). Mutations in the HC-Pro gene of zucchini yellow mosaic potyvirus: effects on aphid transmission and binding to purified virions. J Gen Virol 79, 897-904.
31. Rankovic, M., Ogasanovic, D. & Paunovic, S. (1994). Breeding of plum cultivars resistant to sharka (plum pox) disease. Acta Hortic 359, 69-73.
32. Revers, F., Le Gall, O., Candresse, T., Le Romancer, M. & Dunez, J. (1996). Frequent occurrence of recombinant potyvirus isolates. J Gen Virol 77, 1953-1965.
33. Riechmann, J. L., Lain, S. & Garcia, J. A. (1992). Highlights and prospects of potyvirus molecular biology. J Gen Virol 73, 1-16.
34. Saenz, P., Quoit, L., Quiot, J. B., Candresse, T. & Garcia, J. A. (2001). Pathogenicity determinants in the complex virus population of a Plum pox virus isolate. Mol Plant Microb Interact 14, 278-287.
35. Sawyer, S. (1989). Statistical tests for detecting gene conversion. Mol Biol Evol 6, 526-538.
36. Simon, A. E. & Bujarski, J. J. (1994). RNA-RNA recombination and evolution in virus-infected plants. Annu Rev Phytopathol 32, 337-362.
37. Simon-Buela, L., Guo, H. S. & Garcia, J. A. (1997). Long sequences in the 5′ non-coding region of plum pox virus are not necessary for viral infectivity but contribute to competitiveness and pathogenesis. Virology 233, 157-162.
38. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
39. Tomimura, K., Gibbs, A. J., Jenner, C. E., Walsh, J. A. & Ohshima, K. (2003). The phylogeny of Turnip mosaic virus; comparisons of 38 genomic sequences reveal a Eurasian origin and a recent 'emergence' in east Asia. Mol Ecol 12, 2099-2111.
40. Urcuqui-Inchima, S., Haenni, A. L. & Bernardi, F. (2001). Potyvirus proteins: a wealth of functions. Virus Res 74, 157-175.
41. Ward, C. W., Weiller, G. F., Shukla, D. D. & Gibbs, A. (1995). Molecular systematics of the Potyviridae, the largest plant virus family. In Molecular Basis of Virus Evolution, pp. 477-500. Edited by A. J. Gibbs, C. H. Calisher & F. Garcia-Arenal. Cambridge: Cambridge University Press.
42. Weiller, G. F. (1998). Phylogenetic profiles: a graphical method for detecting genetic recombinations in homologous sequences. Mol Biol Evol 15, 326-335.
43. Wetzel, T., Candresse, T., Ravelonandro, M., Delbos, R. P., Mazyad, H., Aboul-Ata, A. E. & Dunez, J. (1991). Nucleotide sequence of the 3′-terminal region of the RNA of the El Amar strain of plum pox potyvirus. J Gen Virol 72, 1741-1746.
44. Wetzel, T., Candresse, T., Macquaire, G., Ravelonandro, M. & Dunez, J. (1992). A highly sensitive immunocapture polymerase chain reaction method for plum pox potyvirus detection. J Virol Methods 39, 27-37.
45. Worobey, M. & Holmes, E. C. (1999). Evolutionary aspects of recombination in RNA viruses. J Gen Virol 80, 2535-2543.