-
1
-
-
0025183708
-
Basic local alignment search tool
-
S. Altschul, W. Gish, W. Miller, E. Myers, and D. J. Lipman. Basic local alignment search tool. J. Mol. Biol., 215:403-410, 1990.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.1
Gish, W.2
Miller, W.3
Myers, E.4
Lipman, D.J.5
-
2
-
-
0002139526
-
The myriad virtues of subword trees
-
NATO ISI Series, Springer-Verlag
-
A. Apostolico. The myriad virtues of subword trees. Combinatorial Algorithms on Words, NATO ISI Series, Springer- Verlag, pages 85-96, 1985.
-
(1985)
Combinatorial Algorithms on Words
, pp. 85-96
-
-
Apostolico, A.1
-
4
-
-
0032644644
-
q-gram based database searching using a suffix array (QUASAR)
-
S. Burkhardt, A. Crauser, P. Ferragina, H. Lenhof, E. Rivals, and M. Vingron. q-gram based database searching using a suffix array (quasar). In RECOMB, pages 77-83, 1999.
-
(1999)
RECOMB
, pp. 77-83
-
-
Burkhardt, S.1
Crauser, A.2
Ferragina, P.3
Lenhof, H.4
Rivals, E.5
Vingron, M.6
-
5
-
-
84937413030
-
A metric index for approximate string matching
-
E. Chavez and G. Navarro. A metric index for approximate string matching. In LATIN, pages 181-195, 2002.
-
(2002)
LATIN
, pp. 181-195
-
-
Chavez, E.1
Navarro, G.2
-
6
-
-
0000228203
-
A model of evolutionary change in proteins
-
National Biomedical Research Foundation, Washington, DC
-
M. O. Dayhoff, R. M. Schwartz, and B. C. Orcutt. A model of evolutionary change in proteins. Atlas of Protein Sequence Structure. National Biomedical Research Foundation, Washington, DC, 5:345-352, 1978.
-
(1978)
Atlas of Protein Sequence Structure
, vol.5
, pp. 345-352
-
-
Dayhoff, M.O.1
Schwartz, R.M.2
Orcutt, B.C.3
-
7
-
-
0036306157
-
-
E. Giladi, M. G. Walker, J. Wang, and W. Volkmuth. Sst: an algorithm for finding near-exact sequence matches in time proportional to the logarithm of the database size. 18(6):873-877, 2002.
-
(2002)
Sst: An Algorithm for Finding Near-exact Sequence Matches in Time Proportional to the Logarithm of the Database Size
, vol.18
, Issue.6
, pp. 873-877
-
-
Giladi, E.1
Walker, M.G.2
Wang, J.3
Volkmuth, W.4
-
8
-
-
0026458378
-
Amino acid substitution matrices from protein blocks
-
10915-10519
-
S. Henikoff and J. Henikoff. Amino acid substitution matrices from protein blocks. Proc. Natl. Acad. Sci., 89:10915-10519, 1992.
-
(1992)
Proc. Natl. Acad. Sci.
, vol.89
-
-
Henikoff, S.1
Henikoff, J.2
-
9
-
-
0009735557
-
Two algorithms for approximate string matching in static texts
-
P. Jokinen and E. Ukkonen. Two algorithms for approximate string matching in static texts. Proc. MFCS'91, 16:240-248, 1991.
-
(1991)
Proc. MFCS'91
, vol.16
, pp. 240-248
-
-
Jokinen, P.1
Ukkonen, E.2
-
10
-
-
84944324113
-
Efficient index structures for string databases
-
T. Kahveci and A. Singh. Efficient index structures for string databases. VLDB, pages 351-360, 2001.
-
(2001)
VLDB
, pp. 351-360
-
-
Kahveci, T.1
Singh, A.2
-
11
-
-
0036202921
-
Patternhunter: Faster and more sensitive homology search
-
March
-
B. Ma, J. Tromp, and M. Li. Patternhunter: faster and more sensitive homology search. Bioinformatics, 18(3):440-445, March 2002.
-
(2002)
Bioinformatics
, vol.18
, Issue.3
, pp. 440-445
-
-
Ma, B.1
Tromp, J.2
Li, M.3
-
12
-
-
2442603117
-
A hybrid indexing method for approximate string matching
-
G. Navarro and R. Baeza-Yates. A hybrid indexing method for approximate string matching. J. of Discrete Algorithms, 1(1):205-239, 2000.
-
(2000)
J. of Discrete Algorithms
, vol.1
, Issue.1
, pp. 205-239
-
-
Navarro, G.1
Baeza-Yates, R.2
-
13
-
-
0001851762
-
Indexing methods for approximate string matching
-
G. Navarro, R. Baeza-Yates, E. Sutinen, and J. Tarhio. Indexing methods for approximate string matching. IEEE Data Engineering Bulletin, 24(4):19-27, 2001.
-
(2001)
IEEE Data Engineering Bulletin
, vol.24
, Issue.4
, pp. 19-27
-
-
Navarro, G.1
Baeza-Yates, R.2
Sutinen, E.3
Tarhio, J.4
-
14
-
-
84942676877
-
-
NCBI. National center for biotechnology information(ncbi) website. http://www.ncbi.nih.gov/.
-
-
-
NCBI1
-
15
-
-
0014757386
-
General method applicable to the search for similarities in the amino acid sequence of two proteins
-
S. B. Needleman and C. Wunsch. General method applicable to the search for similarities in the amino acid sequence of two proteins. J. of Mol. Biol., 48:443-453, 1970.
-
(1970)
J. of Mol. Biol.
, vol.48
, pp. 443-453
-
-
Needleman, S.B.1
Wunsch, C.2
-
17
-
-
0028309899
-
Using the fasta program to search protein and DNA sequence databases
-
W. R. Pearson. Using the fasta program to search protein and dna sequence databases. Methods Mol Biol, 25:365-389, 1994.
-
(1994)
Methods Mol Biol
, vol.25
, pp. 365-389
-
-
Pearson, W.R.1
-
18
-
-
0019887799
-
Identification of common molecular subsequences
-
R. Smith and M. S. Waterman. Identification of common molecular subsequences. J. Mol. Biol., 147:195-197, 1981.
-
(1981)
J. Mol. Biol.
, vol.147
, pp. 195-197
-
-
Smith, R.1
Waterman, M.S.2
-
19
-
-
0027968068
-
Clustal w: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice
-
J. D. Thompson, D. G. Higgins, and T. J. Gibson. Clustal w: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res., 22:4673-4680, 1994.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
20
-
-
33746245557
-
-
May, Department of Cell Biology, Baylor College of Medicine, Houston, Texas
-
D. Wheeler. Weight matrices for sequence similarity scoring. http://www.techfak.unibielefeld.de/bcd/Curric/PrwAli/nodeD.html, May 1996. Department of Cell Biology, Baylor College of Medicine, Houston, Texas.
-
(1996)
Weight Matrices for Sequence Similarity Scoring
-
-
Wheeler, D.1
-
21
-
-
84882410240
-
A comparison of DFT and DWT based similarity search in time-series databases
-
Y. Wu, D. Agrawal, and A. E. Abbadi. A comparison of dft and dwt based similarity search in time-series databases. CIKM, pages 488-495, 2000.
-
(2000)
CIKM
, pp. 488-495
-
-
Wu, Y.1
Agrawal, D.2
Abbadi, A.E.3
|