-
2
-
-
0042430535
-
Optimizing enzyme function by directed evolution
-
P.A. Dalby Optimizing enzyme function by directed evolution Curr. Opin. Struct. Biol. 13 2003 500 505
-
(2003)
Curr. Opin. Struct. Biol.
, vol.13
, pp. 500-505
-
-
Dalby, P.A.1
-
3
-
-
4544252807
-
Directed evolution: Creating new enzymes
-
G.J. Williams, and A. Berry Directed evolution: creating new enzymes Biochemist 25 2003 13 15
-
(2003)
Biochemist
, vol.25
, pp. 13-15
-
-
Williams, G.J.1
Berry, A.2
-
6
-
-
0035177610
-
Enzyme engineering: Rational redesign versus directed evolution
-
R. Chen Enzyme engineering: rational redesign versus directed evolution Trends Biotechnol. 19 2001 13 14
-
(2001)
Trends Biotechnol.
, vol.19
, pp. 13-14
-
-
Chen, R.1
-
7
-
-
0038266942
-
Construction, expression and characterization of a chimeric mammalian-plant aspartic proteinase
-
K.G. Payie, T. Tanaka, S. Gal, and R.Y. Yada Construction, expression and characterization of a chimeric mammalian-plant aspartic proteinase Biochem. J. 372 2003 671 678
-
(2003)
Biochem. J.
, vol.372
, pp. 671-678
-
-
Payie, K.G.1
Tanaka, T.2
Gal, S.3
Yada, R.Y.4
-
8
-
-
0035183895
-
N-terminal portion acts as an initiator of the inactivation of pepsin at neutral pH
-
T. Tanaka, and R.Y. Yada N-terminal portion acts as an initiator of the inactivation of pepsin at neutral pH Protein Eng. 14 2001 669 674
-
(2001)
Protein Eng.
, vol.14
, pp. 669-674
-
-
Tanaka, T.1
Yada, R.Y.2
-
9
-
-
0242667906
-
N-terminal modifications increase the neutral-pH stability of pepsin
-
B.C. Bryksa, T. Tanaka, and R.Y. Yada N-terminal modifications increase the neutral-pH stability of pepsin Biochemistry 42 2003 13331 13338
-
(2003)
Biochemistry
, vol.42
, pp. 13331-13338
-
-
Bryksa, B.C.1
Tanaka, T.2
Yada, R.Y.3
-
10
-
-
0026520387
-
Converting trypsin to chymotrypsin: The role of surface loops
-
L. Hedstrom, L. Szilagyi, and W.J. Rutter Converting trypsin to chymotrypsin: the role of surface loops Science 255 1992 1249 1253
-
(1992)
Science
, vol.255
, pp. 1249-1253
-
-
Hedstrom, L.1
Szilagyi, L.2
Rutter, W.J.3
-
11
-
-
0027965324
-
Converting trypsin to chymotrypsin: Ground-state binding does not determine substrate specificity
-
L. Hedstrom, S. Farr-Jones, C.A. Kettner, and W.J. Rutter Converting trypsin to chymotrypsin: ground-state binding does not determine substrate specificity Biochemistry 33 1994 8764 8769
-
(1994)
Biochemistry
, vol.33
, pp. 8764-8769
-
-
Hedstrom, L.1
Farr-Jones, S.2
Kettner, C.A.3
Rutter, W.J.4
-
12
-
-
0028133496
-
Converting trypsin to chymotrypsin: Residue 172 is a substrate specificity determinant
-
L. Hedstrom, J.J. Perona, and W.J. Rutter Converting trypsin to chymotrypsin: residue 172 is a substrate specificity determinant Biochemistry 33 1994 8757 8763
-
(1994)
Biochemistry
, vol.33
, pp. 8757-8763
-
-
Hedstrom, L.1
Perona, J.J.2
Rutter, W.J.3
-
13
-
-
0042415783
-
NAMD2: Greater scalability for parallel molecular dynamics
-
L. Kale, R. Skeel, M. Bhandarkar, R. Brunner, A. Gursoy, N. Krawetz, J. Phillips, A. Shinozaki, K. Varadarajan, and K. Schulten NAMD2: greater scalability for parallel molecular dynamics J. Comput. Phys. 151 1999 283 312
-
(1999)
J. Comput. Phys.
, vol.151
, pp. 283-312
-
-
Kale, L.1
Skeel, R.2
Bhandarkar, M.3
Brunner, R.4
Gursoy, A.5
Krawetz, N.6
Phillips, J.7
Shinozaki, A.8
Varadarajan, K.9
Schulten, K.10
-
14
-
-
84986512474
-
CHARMM: A program for macromolecular energy, minimization, and dynamics calculations
-
B.R. Brooks, R.E. Bruccoleri, B.D. Olafson, D.J. States, S. Swaminathan, and M. Karplus CHARMM: a program for macromolecular energy, minimization, and dynamics calculations J. Comput. Chem. 4 1983 187 217
-
(1983)
J. Comput. Chem.
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
Karplus, M.6
-
15
-
-
0029983494
-
Expression of soluble cloned porcine pepsinogen a in Escherichia coli
-
T. Tanaka, and R.Y. Yada Expression of soluble cloned porcine pepsinogen A in Escherichia coli Biochem. J. 315 1996 443 446
-
(1996)
Biochem. J.
, vol.315
, pp. 443-446
-
-
Tanaka, T.1
Yada, R.Y.2
-
16
-
-
0022766162
-
A systematic series of synthetic chromophoric substrates for aspartic proteases
-
B.M. Dunn, M. Jimenez, B.F. Parten, M.J. Veller, C.E. Rolph, and J. Kay A systematic series of synthetic chromophoric substrates for aspartic proteases Biochem. J. 237 1986 899 906
-
(1986)
Biochem. J.
, vol.237
, pp. 899-906
-
-
Dunn, B.M.1
Jimenez, M.2
Parten, B.F.3
Veller, M.J.4
Rolph, C.E.5
Kay, J.6
-
17
-
-
0026768309
-
Specificity of a milk-clotting enzyme extracted from the thistle Cynara cardunculus L.: Action on oxidised insulin and k-casein
-
C.J. Faro, A.J.G. Moir, and E.V. Pires Specificity of a milk-clotting enzyme extracted from the thistle Cynara cardunculus L.: action on oxidised insulin and k-casein Biotechnol. Lett. 14 1992 841 846
-
(1992)
Biotechnol. Lett.
, vol.14
, pp. 841-846
-
-
Faro, C.J.1
Moir, A.J.G.2
Pires, E.V.3
-
18
-
-
0018130363
-
Inactivation of the protease inhibitor phenylmethylsulfonyl fluoride in buffers
-
G.T. James Inactivation of the protease inhibitor phenylmethylsulfonyl fluoride in buffers Anal. Biochem. 86 1978 574 579
-
(1978)
Anal. Biochem.
, vol.86
, pp. 574-579
-
-
James, G.T.1
-
19
-
-
0031569827
-
Engineered porcine pepsinogen exhibits dominant unimolecular activation
-
T. Tanaka, and R.Y. Yada Engineered porcine pepsinogen exhibits dominant unimolecular activation Arch. Biochem. Biophys. 340 1997 355 358
-
(1997)
Arch. Biochem. Biophys.
, vol.340
, pp. 355-358
-
-
Tanaka, T.1
Yada, R.Y.2
-
20
-
-
0014413808
-
Structure of crystalloine a-chymotrypsin II. a preliminary report including hypothesis for the activation mechanism
-
P.B. Sigler, D.M. Blow, B.W. Matthews, and R. Henderson Structure of crystalloine a-chymotrypsin II. A preliminary report including hypothesis for the activation mechanism J. Mol. Biol. 35 1968 143 164
-
(1968)
J. Mol. Biol.
, vol.35
, pp. 143-164
-
-
Sigler, P.B.1
Blow, D.M.2
Matthews, B.W.3
Henderson, R.4
-
21
-
-
0000684595
-
Structure of a pepsin/renin inhibitor complex reveals a novel crystal packing induced by minor chemical alterations in the inhibitor
-
L. Chen, J.W. Erickson, T.J. Rydel, C.H. Park, D. Neidhart, J. Luly, and C. Abad-Zapatero Structure of a pepsin/renin inhibitor complex reveals a novel crystal packing induced by minor chemical alterations in the inhibitor Acta Cryst. B 48 1992 476 488
-
(1992)
Acta Cryst. B
, vol.48
, pp. 476-488
-
-
Chen, L.1
Erickson, J.W.2
Rydel, T.J.3
Park, C.H.4
Neidhart, D.5
Luly, J.6
Abad-Zapatero, C.7
-
22
-
-
0000906630
-
Conformational flexibility in the active sites of aspartyl proteinases revealed by a pepstatin fragment binding to penicillopepsin
-
M.N.G. James, A. Sielecki, F. Salituro, D.H. Rich, and T. Hofmann Conformational flexibility in the active sites of aspartyl proteinases revealed by a pepstatin fragment binding to penicillopepsin Proc. Natl. Acad. Sci. USA 79 1982 6137 6146
-
(1982)
Proc. Natl. Acad. Sci. USA
, vol.79
, pp. 6137-6146
-
-
James, M.N.G.1
Sielecki, A.2
Salituro, F.3
Rich, D.H.4
Hofmann, T.5
-
23
-
-
0024438910
-
High-resolution X-ray diffraction study of the complex between endothiapepsin and an oligopeptide inhibitor: The analysis of the inhibitor binding and description of the rigid body shift in the enzyme
-
A. Sali, B. Veerapandian, J.B. Cooper, S.I. Foundling, D.J. Hoover, and T.L. Blundell High-resolution X-ray diffraction study of the complex between endothiapepsin and an oligopeptide inhibitor: the analysis of the inhibitor binding and description of the rigid body shift in the enzyme EMBO J. 8 1989 2179 2188
-
(1989)
EMBO J.
, vol.8
, pp. 2179-2188
-
-
Sali, A.1
Veerapandian, B.2
Cooper, J.B.3
Foundling, S.I.4
Hoover, D.J.5
Blundell, T.L.6
-
24
-
-
0023434194
-
Binding of a reduced peptide inhibitor to the aspartic proteinase from Rhizopus chinensis: Implications for a mechanism of action
-
K. Suguna, E.A. Padlan, C.W. Smith, W.D. Carson, and D.R. Davies Binding of a reduced peptide inhibitor to the aspartic proteinase from Rhizopus chinensis: implications for a mechanism of action Proc. Natl. Acad. Sci. USA 84 1987 7009 7013
-
(1987)
Proc. Natl. Acad. Sci. USA
, vol.84
, pp. 7009-7013
-
-
Suguna, K.1
Padlan, E.A.2
Smith, C.W.3
Carson, W.D.4
Davies, D.R.5
-
25
-
-
0020488572
-
Three-dimensional structure of the complex of the Rhizopus chinensis carboxyl proteinase and pepstatin at 2.5 Å resolution
-
R. Bott, E. Subramanian, and D.R. Davies Three-dimensional structure of the complex of the Rhizopus chinensis carboxyl proteinase and pepstatin at 2.5 Å resolution Biochemistry 21 1982 6956 6962
-
(1982)
Biochemistry
, vol.21
, pp. 6956-6962
-
-
Bott, R.1
Subramanian, E.2
Davies, D.R.3
-
26
-
-
0002039626
-
Effects of conserved Tyr75 replacement to the catalytic properties of porcine pepsin a
-
T. Tanaka, K.S.L. Teo, K.M. Lamb, L.J. Harris, and R.Y. Yada Effects of conserved Tyr75 replacement to the catalytic properties of porcine pepsin A Protein Peptide Lett. 5 1998 19 26
-
(1998)
Protein Peptide Lett.
, vol.5
, pp. 19-26
-
-
Tanaka, T.1
Teo, K.S.L.2
Lamb, K.M.3
Harris, L.J.4
Yada, R.Y.5
|